prot_H-paniculata_contig2801.7658.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2801.7658.1
Unique Name	prot_H-paniculata_contig2801.7658.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	147

Homology

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 5.310e-50
Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG 83
            MHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GK+DEILGP+NGVMFTVKPD+GVNASSF+NGDK+FIGTQKLLP+SRFTGEG
Sbjct:   43 MHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 145 bits (367), Expect = 1.500e-42
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEGGGG 86
            MHPCE EMVYKLTN+MVPYFNAGAYL+NKTKIGK+DEI GP+N +MFTVKPD+GV A+SF+ GDKV+IGT KLLP+SRFTG G  G
Sbjct:   28 MHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.830e-41
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTG 81
            +H CE EMVYKLTN MVPYFNAGAYL+NKTKIGK+DEILGPING  FTVKPD GVNA+SF++GDKVFIG  KLLP+SRFTG
Sbjct:   48 VHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.320e-38
Identity = 61/83 (73.49%), Postives = 74/83 (89.16%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG 83
            MHPCE EMVYKL + MVPYFNAGA+L +KTK+GK+DEI GPIN +MFTVKPD+GV+A+SF+  DKVF+ T+KLLP+SRFTGEG
Sbjct:   54 MHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.260e-37
Identity = 58/66 (87.88%), Postives = 64/66 (96.97%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKV 66
            MHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GK+DEILGP+NGVMFTVKPD+GVNASSF+N DK+
Sbjct:   49 MHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.320e-37
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG---GGG 86
            MH CEDEMVYK T+  VPYFNAG YL+NKTKIGK+DEILG IN VMFTVKPDSGV A SF++GDKV+I   KLLPLSRFT +G   GGG
Sbjct:   55 MHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A662WI78_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI78_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.690e-37
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 80
            MH CEDEMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPDSGV+A+SFQ GDKVFI   KLLPLSRFT
Sbjct:   66 MHSCEDEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSAASFQAGDKVFISPDKLLPLSRFT 145

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A484EGG2_BRELC (H/ACA ribonucleoprotein complex subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG2_BRELC)

HSP 1 Score: 134 bits (336), Expect = 1.020e-36
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 80
            MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPDSGV+ASSFQ GDKVFI   KLLPLSRFT
Sbjct:   49 MHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSASSFQAGDKVFISPDKLLPLSRFT 128

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 135 bits (341), Expect = 1.240e-36
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 80
            MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPD+GV+ASSFQNGDKVFI   KLLPLSRFT
Sbjct:  123 MHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFT 202

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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: G4ZSZ3_PHYSP (H/ACA ribonucleoprotein complex subunit n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZSZ3_PHYSP)

HSP 1 Score: 132 bits (332), Expect = 3.660e-36
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0

Query:    1 MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 80
            MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPD+GV+ASSFQ GDKVFI   KLLPL+RFT
Sbjct:   46 MHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQTGDKVFISPDKLLPLARFT 125

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KV55_9PHAE	5.310e-50	90.36	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
A0A7S3USE8_HETAK	1.500e-42	77.91	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A835YSJ1_9STRA	2.830e-41	81.48	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
A0A7S2UZ93_9STRA	1.320e-38	73.49	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
D8LD14_ECTSI	6.260e-37	87.88	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A6A4XZY0_9STRA	6.320e-37	74.16	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A662WI78_9STRA	7.690e-37	80.00	H/ACA ribonucleoprotein complex subunit n=2 Tax=No...	[more]
A0A484EGG2_BRELC	1.020e-36	80.00	H/ACA ribonucleoprotein complex subunit n=1 Tax=Br...	[more]
D0NS88_PHYIT	1.240e-36	80.00	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph...	[more]
G4ZSZ3_PHYSP	3.660e-36	77.50	H/ACA ribonucleoprotein complex subunit n=5 Tax=Ph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 1..80 e-value: 1.2E-25 score: 90.1
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 1..80 e-value: 1.3E-31 score: 110.3
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..144
None	No IPR available	PRODOM	PD020235		coord: 2..79 e-value: 7.0E-24 score: 270.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 1..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2801	contig	H-paniculata_contig2801:4271..4711 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2801.7658.1	mRNA_H-paniculata_contig2801.7658.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2801 4271..4726 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2801.7658.1 ID=prot_H-paniculata_contig2801.7658.1|Name=mRNA_H-paniculata_contig2801.7658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVK
PDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEGGGGGRGGGGRGAARGRG
GGGMRGGRGGGRGGFSSPRGRGGGMRGGGGGGMRGGRGGSRGRGRV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR009000	Transl_B-barrel_sf