mRNA_H-paniculata_contig280.7654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig280.7654.1
Unique NamemRNA_H-paniculata_contig280.7654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: D7FVB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.300e-19
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  325 GALRLAEGNADDAMAAAREQAEKLKEQXXXXXXEASSAEMAIGRNPATAAAEDAPEPT------EDMLPRKIISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            GALR+A+G+ D AM+AA E A++LKEQ       A+ +E  I   PA+  A++  E        EDM P++ IS++M+ RL +EL SQGA+PN+SAGNPILVVA I+ +LVIVGGQG
Sbjct:   26 GALRMADGDGD-AMSAAEETAKRLKEQAAALRESAAESEAEI--RPASDKADEVTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQG 139
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: A0A7S4D594_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 8.480e-9
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  499 EDMLPRKIISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            E+ LPR  IS  MK +L RELE+QGANPNK+A NPIL+++ ++ +LVI+ G G
Sbjct:   94 EEELPRVEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGG 146
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: A0A836CMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.090e-8
Identity = 29/47 (61.70%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:  517 KIISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            K +S+ MKA+L +EL SQGA+PN+S+GN IL+VAA++G+LV++GGQG
Sbjct:  105 KELSEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQG 151
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: A0A7S2V2G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-8
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  523 ISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            +S+NMK +L REL SQGA+PN+++GNPIL+V AI+ +LVI GGQG
Sbjct:  103 MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQG 147
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: A0A0G4H860_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 6.420e-8
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  523 ISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            IS +MK RL RELE QGANPNKS GNP L++  I+  LVI+GG+G
Sbjct:  105 ISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKG 149
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: W7TC08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.230e-6
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  502 DMLPRKIISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            +M P   +SDNM+ +L  E   QGA+ N S GNPIL++A ++G+LV++GG+G
Sbjct:   79 EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKG 130
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BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Match: A0A4D9CZL2_9STRA (Symplekin_C domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.910e-5
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  523 ISDNMKARLTRELESQGANPNKSAGNPILVVAAIVGLLVIVGGQG 657
            +SDNM+ +L  E   QGA+ N S GNPIL++A ++G+LV++GG+G
Sbjct:  166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKG 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig280.7654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVB7_ECTSI2.300e-1951.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D594_HETAK8.480e-956.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CMY3_9STRA1.090e-861.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2G0_9STRA1.200e-864.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4H860_VITBC6.420e-864.44Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TC08_9STRA4.230e-648.08Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZL2_9STRA4.910e-551.11Symplekin_C domain-containing protein n=2 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig280contigH-paniculata_contig280:22378..24688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue9.5e-17
Seed eggNOG ortholog2880.D7FVB7
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BW48@1,2T009@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size659
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig280.7654.1prot_H-paniculata_contig280.7654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig280 22378..24688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.242141-CDS-H-paniculata_contig280:22377..226101622929849.242141-CDS-H-paniculata_contig280:22377..22610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 22378..22610 -
1691481038.5089195-CDS-H-paniculata_contig280:22377..226101691481038.5089195-CDS-H-paniculata_contig280:22377..22610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 22378..22610 -
1622929849.25505-CDS-H-paniculata_contig280:22924..230461622929849.25505-CDS-H-paniculata_contig280:22924..23046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 22925..23046 -
1691481038.5207188-CDS-H-paniculata_contig280:22924..230461691481038.5207188-CDS-H-paniculata_contig280:22924..23046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 22925..23046 -
1622929849.2696722-CDS-H-paniculata_contig280:24386..246881622929849.2696722-CDS-H-paniculata_contig280:24386..24688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 24387..24688 -
1691481038.531321-CDS-H-paniculata_contig280:24386..246881691481038.531321-CDS-H-paniculata_contig280:24386..24688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig280 24387..24688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig280.7654.1

>prot_H-paniculata_contig280.7654.1 ID=prot_H-paniculata_contig280.7654.1|Name=mRNA_H-paniculata_contig280.7654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
VVYCAQARLPFTLPYFGILVPTATGTKIHYTILGLLSFLGYIMLFLRGLA
FASLAAIGIGYVSAFVNNDLSHVSQHQGGSASASITARTTHIQQHQLQPP
LLRRQRSFGALRLAEGNADDAMAAAREQAEKLKEQAAALREEASSAEMAI
GRNPATAAAEDAPEPTEDMLPRKIISDNMKARLTRELESQGANPNKSAGN
PILVVAAIVGLLVIVGGQG
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mRNA from alignment at H-paniculata_contig280:22378..24688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig280.7654.1 ID=mRNA_H-paniculata_contig280.7654.1|Name=mRNA_H-paniculata_contig280.7654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2311bp|location=Sequence derived from alignment at H-paniculata_contig280:22378..24688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCTATTGTGCACAAGCAAGGCTACCTTTTACATTACCCTACTTCGG
GATATTGGTACCAACAGCAACAGGGACTAAAATACACTATACTATACTGG
GATTGCTAAGTTTTCTGGGGTATATCATGTTGTTCTTGAGAGGCCTCGCT
TTTGCCTCCCTGGCCGCAATTGGAATTGGATATGTGTCAGCCTTCGTAAA
TAATGACTTGTCGCATGTTTCTCAACACCAAGGTGGCTCCGCTTCAGCTT
CGATTACCGCCCGGACAACGCATATCCAACAGCACCAATTGCAACCACCG
CTGTGAGTGAAGGCTACATATGGAAGCTGTGTTTTATGCTTCGATATCTG
CTCGGTTTTCGGTATCGGGGGTACCGTTGATTGCCCATGCTTTTCAGCTT
TTTTGGTGTATCCAACGCTTGCGTGGTCCCGTTACAAGTATTCGTTACTC
TTAGTTACTGTCTGTCTGTTTGTCTCTTGGTGCCCTATGAAAGTCTGTTG
TAAAGTAGCAGGGAGTTACGTAGATAATGTTCGAAATCCTGTATTTGGCC
CGTCATTCAGATATCTTTCACGTCCCGGTTAGCTGAAATTGGTTTAACCT
CCACTTTGCTGTCATCCAACTGTAGATTCTATTTGCTCCTCAGCCATTTT
AAATGCATATGCATTGGCGGCTGTTAGCTGAACCCAAAGTCTTAATACCG
TGTTCAGGGTGCTAGAGTAGGGTATCAGAGATACCTTGACCCTAGTTACA
GTTTGTGGTCGCATCGTGTGGGCTTTCTTGTTCACGCCTCGACTGCGATA
TTTGCTTTAACAACGGCAGTTGTGTTGCTCGGCCGGTCAACGCAATAGCA
TGATATGAAGCAGCTATCTACTGCCGTAGATATGCACCCGCGCCTGCACA
TTGTATGCGACCGCCTTACGAAAATCATCCAGAATCTCAGCGAGTTAAAG
ATAAACATTACGGATACAACGAATTGTGCCTTTTTATTCCTAGTTATTTG
TGAAACATTTCGGGAGGGATTAAACCGCAACGCGTGCTCCCTCGTGACAC
TTCAGCAGCCTATAGCGCCCAACTCACCTGTCTACAAATAGGGAGACGGA
AGGCATGCAGGCGTCCTCATGATGCGTGTTGCCATTTTGTGTTCTCATTT
TCTCCACATCTACGCCGAGAATTGAAGAACATGGATATTGCCTAGATCTA
AACGTGTGTCGAGGGTCATGTCTCCTACATCTTAGGTAACACACGCACAG
TATCAAAACACACATATTTTCCGATCATTCTGACCAGGCAAAAGTTCACC
TTGTGGCAAGACTCCTCATTATCCTCTCAGCGCCCATGCGATCTTCGTAA
ATCTTTACCGTACTTTAGATACCCGAAGGGGCTTGGTGTGCTCGCCTTCA
ACCTCGGATCTACATCAAGTTTACCTACCCAATTGTTCACCCTTGCGCAC
GCACATCTTGGAGCTAAAACGCCGCCACTCAGTTCGCTCAGTTGTGGCTT
CCAAGACTGCACAGACCACCAAAACTACTATTGGCACGGCTAGAGGGACA
TTAGCCATCTATGGATGAAACTACTTACCTCTCTAGCCTCTTTGCCAAGC
ATACCTCATATTTCGACCCGGGGTGTTACTACTACGTACTAGGCTGCGTA
GGCAGAGATCATTCGGTGCTCTACGCCTAGCGGAAGGCAATGCCGACGAC
GCCATGGCAGCCGCTCGCGAGCAGGCCGAGAAACTCAAGGAGCAGGCGGC
GGCGCTTCGCGAAGGTGAGTCTTGGAGAATAACGGCTGCATCTTAATTAT
GTGGAAAAAGAGGCAGCACAGTTGCATACTTGGGTATTGTCGCGACCTAC
CTTGATACTTTGTATTTTGCCTAATACCTTGGTGATCACGTTGTTCAAGA
TACTGAACGCTTCGTTGCTCTACAGAATATATCACGCCGTGGCAGATGCT
GCGATACCTTTTACCTGTAATGTCGTCTCCCACCGAGTCCTCTTCTAATT
CGGATTGGAAAAAGGATGTGCAATGACAGCAATAATTAATCATGAAATGA
CAAGAAAAAAAGTATTATAAAATTACAGAGGCATCATCTGCCGAGATGGC
AATTGGCCGTAACCCAGCGACTGCAGCTGCCGAGGATGCTCCTGAGCCGA
CCGAAGACATGTTACCAAGAAAAATAATCTCGGACAACATGAAGGCGCGC
CTCACGCGGGAGCTGGAATCTCAGGGTGCTAACCCGAACAAATCTGCTGG
TAACCCCATCCTCGTCGTGGCAGCGATCGTGGGCTTGCTCGTTATCGTCG
GCGGTCAGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig280:22378..24688-

>mRNA_H-paniculata_contig280.7654.1 ID=mRNA_H-paniculata_contig280.7654.1|Name=mRNA_H-paniculata_contig280.7654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig280:22378..24688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCTATTGTGCACAAGCAAGGCTACCTTTTACATTACCCTACTTCGG
GATATTGGTACCAACAGCAACAGGGACTAAAATACACTATACTATACTGG
GATTGCTAAGTTTTCTGGGGTATATCATGTTGTTCTTGAGAGGCCTCGCT
TTTGCCTCCCTGGCCGCAATTGGAATTGGATATGTGTCAGCCTTCGTAAA
TAATGACTTGTCGCATGTTTCTCAACACCAAGGTGGCTCCGCTTCAGCTT
CGATTACCGCCCGGACAACGCATATCCAACAGCACCAATTGCAACCACCG
CTGTTGTCTATTGTGCACAAGCAAGGCTACCTTTTACATTACCCTACTTC
GGGATATTGGTACCAACAGCAACAGGGACTAAAATACACTATACTATACT
GGGATTGCTAAGTTTTCTGGGGTATATCATGTTGTTCTTGAGAGGCCTCG
CTTTTGCCTCCCTGGCCGCAATTGGAATTGGATATGTGTCAGCCTTCGTA
AATAATGACTTGTCGCATGTTTCTCAACACCAAGGTGGCTCCGCTTCAGC
TTCGATTACCGCCCGGACAACGCATATCCAACAGCACCAATTGCAACCAC
CGCTGCTGCGTAGGCAGAGATCATTCGGTGCTCTACGCCTAGCGGAAGGC
AATGCCGACGACGCCATGGCAGCCGCTCGCGAGCAGGCCGAGAAACTCAA
GGAGCAGGCGGCGGCGCTTCGCGAAGGCTGCGTAGGCAGAGATCATTCGG
TGCTCTACGCCTAGCGGAAGGCAATGCCGACGACGCCATGGCAGCCGCTC
GCGAGCAGGCCGAGAAACTCAAGGAGCAGGCGGCGGCGCTTCGCGAAGAG
GCATCATCTGCCGAGATGGCAATTGGCCGTAACCCAGCGACTGCAGCTGC
CGAGGATGCTCCTGAGCCGACCGAAGACATGTTACCAAGAAAAATAATCT
CGGACAACATGAAGGCGCGCCTCACGCGGGAGCTGGAATCTCAGGGTGCT
AACCCGAACAAATCTGCTGGTAACCCCATCCTCGTCGTGGCAGCGATCGT
GGGCTTGCTCGTTATCGTCGGCGGTCAGGGTAGGCATCATCTGCCGAGAT
GGCAATTGGCCGTAACCCAGCGACTGCAGCTGCCGAGGATGCTCCTGAGC
CGACCGAAGACATGTTACCAAGAAAAATAATCTCGGACAACATGAAGGCG
CGCCTCACGCGGGAGCTGGAATCTCAGGGTGCTAACCCGAACAAATCTGC
TGGTAACCCCATCCTCGTCGTGGCAGCGATCGTGGGCTTGCTCGTTATCG
TCGGCGGTCAGGGT
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