mRNA_H-paniculata_contig278.7601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig278.7601.1
Unique NamemRNA_H-paniculata_contig278.7601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig278.7601.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.350e-6
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    4 DLKRRVSEATRQAAAAAEAESSARMESERWRLQCEQLSTVLKGAAPSPASLGGVTPSWSAERRSIKGNNFRE 219
            DL+RR  E TR+A  A E E SAR+ES+ WRL+CEQLS +LK  AP   +L G+ P+W+   +  +G    E
Sbjct:  481 DLERRALEETRRATQAVEGEMSARLESDTWRLRCEQLSALLKEKAPR--ALDGL-PAWATGEQKEQGEGSSE 549
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BLAST of mRNA_H-paniculata_contig278.7601.1 vs. uniprot
Match: A0A6H5K1Q5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.290e-6
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 DLKRRVSEATRQAAAAAEAESSARMESERWRLQCEQLSTVLKGAAPSPASLGGVTPSWSAERRSIKGNNFRE 219
            DL+RR  E TR+A  A E E SAR+ES+ WR++CEQLS +LK  AP   +L G+ P+W+   +  +G +  E
Sbjct:  472 DLERRALEETRRATQAVEGEMSARLESDTWRVRCEQLSALLKEKAPR--ALDGL-PAWATGEQEEQGESSSE 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig278.7601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMX1_ECTSI2.350e-647.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1Q5_9PHAE4.290e-645.83Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig278contigH-paniculata_contig278:17313..18431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.9174786-CDS-H-paniculata_contig278:17312..174231622929840.9174786-CDS-H-paniculata_contig278:17312..17423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 17313..17423 +
1691481034.5956485-CDS-H-paniculata_contig278:17312..174231691481034.5956485-CDS-H-paniculata_contig278:17312..17423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 17313..17423 +
1622929840.9301789-CDS-H-paniculata_contig278:18295..184301622929840.9301789-CDS-H-paniculata_contig278:18295..18430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 18296..18430 +
1691481034.6037996-CDS-H-paniculata_contig278:18295..184301691481034.6037996-CDS-H-paniculata_contig278:18295..18430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 18296..18430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig278.7601.1prot_H-paniculata_contig278.7601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig278 17313..18430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig278.7601.1

>prot_H-paniculata_contig278.7601.1 ID=prot_H-paniculata_contig278.7601.1|Name=mRNA_H-paniculata_contig278.7601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
DDLKRRVSEATRQAAAAAEAESSARMESERWRLQCEQLSTVLKGAAPSPA
SLGGVTPSWSAERRSIKGNNFREYNVSSAVSR
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mRNA from alignment at H-paniculata_contig278:17313..18431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig278.7601.1 ID=mRNA_H-paniculata_contig278.7601.1|Name=mRNA_H-paniculata_contig278.7601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-paniculata_contig278:17313..18431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGACCTCAAGCGGCGCGTTTCAGAGGCTACACGTCAAGCTGCGGCTGC
AGCTGAGGCGGAATCGTCGGCTAGGATGGAGTCCGAGCGGTGGCGTCTTC
AATGCGAGCAGGTGCTAGATGCGTAGTAAGGCATAGGCAACATGTTAGAT
GTGGCAAGATGTCTTGACTATTGCAATATTAGCGTTGCTCAGGTGAACGG
TTTTGGGGTGAGTTCTGTTGGCGTTCTTCATGCTGGGTCCGTCGTTTCAT
TTCGACGAATACATCGAATTTATGTCGGATTCTCCCATGAAAATCTTCAC
GTCTTTTACTTTTCCTCACTCTCTTTTTTCCCTCTTTCTCGATGTCACCT
CATGCAATATGTCCAGAGAATCGGGAAAAAGTTGTATCTGAACAAAACAT
AAAGCACTTTCATACGCGTCCGAATTTCCGAAATTCAGAAGAAGGAAAAA
AGGGGGGAGGAAAGGAGAGAGGCATTGATGTTTGGAAGGTCCGTGACTGG
AGTGATCATGGAGTCAAATCATTTAACTTGCAGGCTACCAATGGTTCAAT
TGTCGACGAGTATTAAAACTGATTTGTTTTTCACCCTCACACGACTCGAG
TTTTTCATGTGTTCTATGTTTTGTAGGCATTTTGTTTTGTAATAACACGG
TAAAAGGAGCCCTCTAGGAAGTCGATTAAGTCTACGGCAAAGCTGTGCAG
CAGACACTTTGCCCTCTTTTCGCCTCTACACTTGGTTATTGTCCAGCAAA
ACTTGTGGGGTCGGTCCGTTCATGTCATACCTGTTCCTGTTCAAACTGCG
CATTATAACGAGCCAAACCGTTCACAACCGATGACATCACTGTAATTTCG
GTTGTGCTCCATAACCTCGGCATACGCAGGAAACGTTCTACCTTTCTTCC
CCCCCCCCCCTCGTATAGCCCTGATTCCATGCCACGTGTGTGTTTTTATC
GCCCGCATGGTGATGAATAAACCCTGCTGTTAGTTGTCTACAGTACTCAA
GGGAGCCGCGCCTTCTCCAGCTTCTTTGGGTGGCGTAACGCCATCTTGGT
CGGCAGAACGGCGGTCCATCAAAGGCAACAATTTTCGTGAGTACAACGTC
AGTTCCGCGGTGTCGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig278:17313..18431+

>mRNA_H-paniculata_contig278.7601.1 ID=mRNA_H-paniculata_contig278.7601.1|Name=mRNA_H-paniculata_contig278.7601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig278:17313..18431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGACCTCAAGCGGCGCGTTTCAGAGGCTACACGTCAAGCTGCGGCTGC
AGCTGAGGCGGAATCGTCGGCTAGGATGGAGTCCGAGCGGTGGCGTCTTC
AATGCGAGCAGGATGACCTCAAGCGGCGCGTTTCAGAGGCTACACGTCAA
GCTGCGGCTGCAGCTGAGGCGGAATCGTCGGCTAGGATGGAGTCCGAGCG
GTGGCGTCTTCAATGCGAGCAGTTGTCTACAGTACTCAAGGGAGCCGCGC
CTTCTCCAGCTTCTTTGGGTGGCGTAACGCCATCTTGGTCGGCAGAACGG
CGGTCCATCAAAGGCAACAATTTTCGTGAGTACAACGTCAGTTCCGCGGT
GTCGAGGTTGTCTACAGTACTCAAGGGAGCCGCGCCTTCTCCAGCTTCTT
TGGGTGGCGTAACGCCATCTTGGTCGGCAGAACGGCGGTCCATCAAAGGC
AACAATTTTCGTGAGTACAACGTCAGTTCCGCGGTGTCGAGG
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