mRNA_H-paniculata_contig27669.7577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27669.7577.1
Unique NamemRNA_H-paniculata_contig27669.7577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 8.390e-44
Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L+IMDKLDL+GRT+EMARLFGIDFFSVLSRGSQYRVEAVMLRVLKP N+VAVSPSRQQVA QAAMESIPLVFEPRSRFYT+P+VVLDFQ
Sbjct: 2232 LSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPHNFVAVSPSRQQVAGQAAMESIPLVFEPRSRFYTSPVVVLDFQ 2320
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 7.380e-43
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L+IMDKLDL+GRT+EMARLFGIDFFSVLSRGSQYRVEAVMLRVLKP N+VAVSPSR QVA QAAMESIPLVFEPRSRFYT+P+VVLDFQ
Sbjct: 2337 LSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPHNFVAVSPSRLQVAGQAAMESIPLVFEPRSRFYTSPVVVLDFQ 2425
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A1B6MFW8_9HEMI (DNA_pol_B domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MFW8_9HEMI)

HSP 1 Score: 123 bits (309), Expect = 3.610e-34
Identity = 59/87 (67.82%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    7 IMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            IM +LDL+GRT+E ARLFGI F+ VLSRGSQ+RVE+++LR++KP NYVAVSPS QQ A   A ES+PL+ EP+SRFYT+P++VLDFQ
Sbjct:   66 IMQQLDLVGRTSEFARLFGIQFYEVLSRGSQFRVESMLLRLVKPLNYVAVSPSIQQRAKMRAPESLPLIMEPQSRFYTDPVIVLDFQ 152
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A699Z3X2_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z3X2_HAELA)

HSP 1 Score: 129 bits (324), Expect = 2.990e-33
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L ++D LDL+GRTAEMAR FGIDFFSVLSRGSQYRVE++++R+   QNYV +SPSR+QV  Q AME+IPLV EP SR YT+P+VVLDFQ
Sbjct:  160 LALIDTLDLVGRTAEMARAFGIDFFSVLSRGSQYRVESLLVRLAHTQNYVMLSPSREQVGGQPAMEAIPLVMEPESRMYTSPVVVLDFQ 248
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A388L7M8_CHABU (DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L7M8_CHABU)

HSP 1 Score: 129 bits (323), Expect = 9.400e-33
Identity = 61/89 (68.54%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L +M++LDL+ RT+E+AR+FGIDFFSV SRGSQYRVE++M+R+   QNY+ +SPSRQQVA+Q AME +PLV EP SRFYT+P+VVLDFQ
Sbjct:  195 LKLMEQLDLVNRTSELARVFGIDFFSVFSRGSQYRVESMMVRLCHTQNYLLISPSRQQVATQPAMECLPLVMEPESRFYTSPVVVLDFQ 283
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A7R9TJ56_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJ56_MICPS)

HSP 1 Score: 120 bits (301), Expect = 1.160e-32
Identity = 56/87 (64.37%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    7 IMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            ++++LDL+ RT+E AR+FGIDFFSVLSRGSQYRVE+++LR+   QNY+AVSPS++QVA Q AME +PLV EP S+ Y++P+ VLDFQ
Sbjct:   29 MLEQLDLVARTSEQARIFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAVSPSKEQVARQPAMECLPLVMEPESKMYSDPVAVLDFQ 115
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: E1ZH16_CHLVA (DNA polymerase (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH16_CHLVA)

HSP 1 Score: 128 bits (322), Expect = 1.190e-32
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L ++D+LDL+GRT EMAR FGIDFFSVLSRGSQYRVEA+M R+   QNY+ V   R+QVA QAAME+IPLV EPRSR YT+P+VVLDFQ
Sbjct:  151 LALLDQLDLVGRTGEMARTFGIDFFSVLSRGSQYRVEAMMARLAHTQNYLLVHAGREQVARQAAMEAIPLVMEPRSRLYTDPLVVLDFQ 239
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A7R9YD13_9STRA (DNA polymerase zeta catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD13_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.530e-32
Identity = 61/89 (68.54%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L +++KLD++G T+EMARL GIDF SV +RGSQYRVEAVM RV+KP+N+  VSPSR QVASQ ++E IPLV EP SRFYT+P++VLDFQ
Sbjct:  189 LRLLEKLDVLGTTSEMARLIGIDFTSVRTRGSQYRVEAVMCRVVKPRNFAVVSPSRPQVASQPSLEVIPLVMEPESRFYTDPVLVLDFQ 277
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A5J4Y5V7_9CHLO (DNA polymerase (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5V7_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 2.400e-32
Identity = 58/89 (65.17%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L ++++LDL+GRTAE+AR FGIDFFSVLSRGSQYRVE++M+R+   QNY+ +SP+++QVA+Q AME++PL+ EP SRFYT+P++VLDFQ
Sbjct:  180 LALLEQLDLIGRTAELARAFGIDFFSVLSRGSQYRVESMMVRLAHTQNYLMLSPAKEQVANQPAMEAVPLILEPESRFYTDPVLVLDFQ 268
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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A2G5F0S8_AQUCA (DNA polymerase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F0S8_AQUCA)

HSP 1 Score: 127 bits (320), Expect = 2.450e-32
Identity = 60/89 (67.42%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 LTIMDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 267
            L IM++LD++ RT+E+AR+FGIDFFSVLSRGSQYRVE+++LR+   QNY+A+SP  QQVASQ AME +PLV EP SRFY++P++VLDFQ
Sbjct: 1202 LEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYSDPVIVLDFQ 1290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE8.390e-4491.01DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI7.380e-4389.89DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A1B6MFW8_9HEMI3.610e-3467.82DNA_pol_B domain-containing protein (Fragment) n=1... [more]
A0A699Z3X2_HAELA2.990e-3370.79DNA polymerase (Fragment) n=1 Tax=Haematococcus la... [more]
A0A388L7M8_CHABU9.400e-3368.54DNA polymerase n=1 Tax=Chara braunii TaxID=69332 R... [more]
A0A7R9TJ56_MICPS1.160e-3264.37Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
E1ZH16_CHLVA1.190e-3271.91DNA polymerase (Fragment) n=1 Tax=Chlorella variab... [more]
A0A7R9YD13_9STRA1.530e-3268.54DNA polymerase zeta catalytic subunit (Fragment) n... [more]
A0A5J4Y5V7_9CHLO2.400e-3265.17DNA polymerase (Fragment) n=1 Tax=Trebouxia sp. A1... [more]
A0A2G5F0S8_AQUCA2.450e-3267.42DNA polymerase n=1 Tax=Aquilegia coerulea TaxID=21... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27669contigH-paniculata_contig27669:752..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue8e-36
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons2
Model size267
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27669.7577.1prot_H-paniculata_contig27669.7577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27669 761..1283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.3160942-UTR-H-paniculata_contig27669:751..7601622929837.3160942-UTR-H-paniculata_contig27669:751..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27669 752..760 +
1691481032.9252455-UTR-H-paniculata_contig27669:751..7601691481032.9252455-UTR-H-paniculata_contig27669:751..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27669 752..760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.3281765-CDS-H-paniculata_contig27669:760..8761622929837.3281765-CDS-H-paniculata_contig27669:760..876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27669 761..876 +
1691481032.936524-CDS-H-paniculata_contig27669:760..8761691481032.936524-CDS-H-paniculata_contig27669:760..876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27669 761..876 +
1622929837.3433785-CDS-H-paniculata_contig27669:1141..12831622929837.3433785-CDS-H-paniculata_contig27669:1141..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27669 1142..1283 +
1691481032.946464-CDS-H-paniculata_contig27669:1141..12831691481032.946464-CDS-H-paniculata_contig27669:1141..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27669 1142..1283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27669.7577.1

>prot_H-paniculata_contig27669.7577.1 ID=prot_H-paniculata_contig27669.7577.1|Name=mRNA_H-paniculata_contig27669.7577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVS
PSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ
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mRNA from alignment at H-paniculata_contig27669:752..1283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27669.7577.1 ID=mRNA_H-paniculata_contig27669.7577.1|Name=mRNA_H-paniculata_contig27669.7577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig27669:752..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACAATTATGGACAAGCTGGACCTCATGGGACGCACAGCAGAAATGGC
TCGGCTGTTCGGCATTGATTTCTTCAGCGTGCTGTCAAGGGGATCGCAGT
ACCGCGTAGAAGCAGTCATGCTCCGGTAAGTGGAAATGATGAACAAAAAG
AACTTGCACAGCGTAGGAGCACCTCTTGAGCGTATTGTTTATTATTTTGC
AGTCGCTTGAATTGTCGCTACAGTAATGAGTGTCGCCATTTGCTTCTGTC
GTACTCCAGTGTTGTTGACCTCCTTTTGTTATATTTTTCTCCATTGTAAC
TCTTGTACCGACCTCCAGCCTGCGTGCACCCGGTCGTTTTGTGTGTGTGT
ATATATATATATATATATACATATATATATATGTTGACAGGGTGTTGAAA
CCGCAGAACTATGTGGCAGTCAGCCCTTCTCGCCAGCAAGTTGCCTCCCA
GGCGGCCATGGAAAGTATTCCCTTGGTGTTCGAACCGCGCAGTCGCTTCT
ACACCAACCCCATCGTTGTCCTAGACTTCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27669:752..1283+

>mRNA_H-paniculata_contig27669.7577.1 ID=mRNA_H-paniculata_contig27669.7577.1|Name=mRNA_H-paniculata_contig27669.7577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig27669:752..1283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGCTGGACCTCATGGGACGCACAGCAGAAATGGCTCGGCTGTT
CGGCATTGATTTCTTCAGCGTGCTGTCAAGGGGATCGCAGTACCGCGTAG
AAGCAGTCATGCTCCGATGGACAAGCTGGACCTCATGGGACGCACAGCAG
AAATGGCTCGGCTGTTCGGCATTGATTTCTTCAGCGTGCTGTCAAGGGGA
TCGCAGTACCGCGTAGAAGCAGTCATGCTCCGGGTGTTGAAACCGCAGAA
CTATGTGGCAGTCAGCCCTTCTCGCCAGCAAGTTGCCTCCCAGGCGGCCA
TGGAAAGTATTCCCTTGGTGTTCGAACCGCGCAGTCGCTTCTACACCAAC
CCCATCGTTGTCCTAGACTTCCAGGGTGTTGAAACCGCAGAACTATGTGG
CAGTCAGCCCTTCTCGCCAGCAAGTTGCCTCCCAGGCGGCCATGGAAAGT
ATTCCCTTGGTGTTCGAACCGCGCAGTCGCTTCTACACCAACCCCATCGT
TGTCCTAGACTTCCAG
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