mRNA_H-paniculata_contig27361.7492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27361.7492.1
Unique NamemRNA_H-paniculata_contig27361.7492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27361.7492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27361contigH-paniculata_contig27361:2015..2472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27361.7492.1prot_H-paniculata_contig27361.7492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27361 2015..2349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.6307123-CDS-H-paniculata_contig27361:2014..21681622929825.6307123-CDS-H-paniculata_contig27361:2014..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27361 2015..2168 +
1691481028.1879027-CDS-H-paniculata_contig27361:2014..21681691481028.1879027-CDS-H-paniculata_contig27361:2014..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27361 2015..2168 +
1622929825.646105-CDS-H-paniculata_contig27361:2281..23491622929825.646105-CDS-H-paniculata_contig27361:2281..2349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27361 2282..2349 +
1691481028.196486-CDS-H-paniculata_contig27361:2281..23491691481028.196486-CDS-H-paniculata_contig27361:2281..2349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27361 2282..2349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.665507-UTR-H-paniculata_contig27361:2349..24721622929825.665507-UTR-H-paniculata_contig27361:2349..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27361 2350..2472 +
1691481028.2046208-UTR-H-paniculata_contig27361:2349..24721691481028.2046208-UTR-H-paniculata_contig27361:2349..2472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27361 2350..2472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27361.7492.1

>prot_H-paniculata_contig27361.7492.1 ID=prot_H-paniculata_contig27361.7492.1|Name=mRNA_H-paniculata_contig27361.7492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig27361:2015..2472+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27361.7492.1 ID=mRNA_H-paniculata_contig27361.7492.1|Name=mRNA_H-paniculata_contig27361.7492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig27361:2015..2472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig27361:2015..2472+

>mRNA_H-paniculata_contig27361.7492.1 ID=mRNA_H-paniculata_contig27361.7492.1|Name=mRNA_H-paniculata_contig27361.7492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig27361:2015..2472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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