mRNA_H-paniculata_contig2736.7491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2736.7491.1
Unique NamemRNA_H-paniculata_contig2736.7491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2736.7491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2736contigH-paniculata_contig2736:5286..9389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size494
Cds size492
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2736.7491.1prot_H-paniculata_contig2736.7491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2736 5288..9389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.5688772-CDS-H-paniculata_contig2736:5287..55081622929825.5688772-CDS-H-paniculata_contig2736:5287..5508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 5288..5508 -
1691481028.1456513-CDS-H-paniculata_contig2736:5287..55081691481028.1456513-CDS-H-paniculata_contig2736:5287..5508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 5288..5508 -
1622929825.582183-CDS-H-paniculata_contig2736:5891..59571622929825.582183-CDS-H-paniculata_contig2736:5891..5957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 5892..5957 -
1691481028.1577241-CDS-H-paniculata_contig2736:5891..59571691481028.1577241-CDS-H-paniculata_contig2736:5891..5957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 5892..5957 -
1622929825.5930731-CDS-H-paniculata_contig2736:9184..93891622929825.5930731-CDS-H-paniculata_contig2736:9184..9389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 9185..9389 -
1691481028.1790082-CDS-H-paniculata_contig2736:9184..93891691481028.1790082-CDS-H-paniculata_contig2736:9184..9389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2736 9185..9389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2736.7491.1

>prot_H-paniculata_contig2736.7491.1 ID=prot_H-paniculata_contig2736.7491.1|Name=mRNA_H-paniculata_contig2736.7491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
TKHKQACWRCVLYSASMAAEREMTWRRRSRGKSRCSGGSVGSGAVGFLLV
AMCSICLLLLPVSTTASKGLPASMGARHASLSSNGDKRRKEKIKETAKRF
SGGTSSARDFTRQRSRVTSSSPSVDTSDSEESDGYESYDDADDEWDDNWS
EEDSWGGSGDAVGT
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mRNA from alignment at H-paniculata_contig2736:5286..9389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2736.7491.1 ID=mRNA_H-paniculata_contig2736.7491.1|Name=mRNA_H-paniculata_contig2736.7491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4104bp|location=Sequence derived from alignment at H-paniculata_contig2736:5286..9389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAAACACAAGCAAGCTTGTTGGCGCTGTGTGCTGTACTCTGCTAGTAT
GGCAGCAGAGAGAGAGATGACGTGGAGGAGGCGATCGCGGGGGAAGAGTC
GTTGCAGCGGTGGTTCGGTTGGATCAGGCGCTGTAGGATTTTTGCTGGTT
GCGATGTGCTCCATCTGCCTGTTATTGCTTCCCGTCTCCACGACGGCTTC
AAAAGGCAAGAGAACAGCCGAGACTGAGAAGGATAGGGACGCGAAGCTTA
GGCGAATTCATGCGTTGTACATGATAAGTTGGAATACATCAAACCGGGGC
TTGAAACATTGCCTCCTTTACAATGTGTACGCTCATTGTTCCAGCAAGGT
GATCTTCGGAGGGAGAGTATCATCCTTCCTATCTTCGTACGCGACTAAAT
CATGTTCCACTACTGACATGTGCTGTTGAAGGTTTGGAGTATGTGACAAC
AACATGACAATGGCGTTAAGATACCCTGGAATCGGTGTTATTTCACTCCC
GAGACTTGCTCTATACGCACAGGATCCCGCTGCATCCGCAATATTTCCCT
GGACTGATGAAGAGTTCGTCAAGTTGATCGTCAAAGCGCATAATAGGGCA
CTCCCCTTTATGGGGCAGATCAGGGTACAAGGAGGACCGACTTGACAGTT
TCATCACACCTTCACAGCACTGAAAGTTGTTTTGTTTTTCTCTCTTTCCA
ACGACTGATGGTCTTTTACGTACTTGTCCAGTACAAGAAAATGGCAACAC
AAGTGCCCAACTATAGTGGACCGACAGGAGTATTTTTTTTGCTGCAGGAA
ATTTTTGTGGCGCAACTGGACATGTACAAGCAGAGAACAAACAGGCCACT
CGAAATATCATCCAGTGACCATTTTATGCTCGTGATTTGGTGTGATACCT
TCGTGGGATTTTTCGTGCATCGCCACCAGCGCCTTCAGAAAGTCGTAACC
TAATCGGGTTCTCGTCAATTTGCGCGATTTCAAAGACGTCAAGTGTGCCC
ATCCATGCTAACTTCCTCTGTTTTTTTGCCAGAGGGTTCTTTGGTTTGTG
TGGTTCTGATGTAAGCTGTATTTTGTCAATTTATATGCAACGTCCCCATA
ATTGCTCAAGGCAAAAAAATAGAACACCAAAAGAAAATATGGTTCAGGCG
TAAAAGCCCCAGTAGCAGGTGGGCCATATTTGCGTGTCCTCAAGCTCACG
CAAAGATTCGTATTTGTAGGAAAGCTGACAACCTCTGCGCACGCCCTTTC
AATCCTGCCTAAAATGGATAATCTCAATCTCAGAAAACGGCGAGACAAAA
AATTTCACCCTCCATACAAATAAGAATACTTGCAAACGGTTTCCACAAAA
AACTGAAAGTATTCGCCTGAGTTTCAGAATGAGGTCATGTATTCTATGTA
TCCCTGACCATCCACGACTGCTAATAACACTCGTAAATCGAATGAACAGC
GGTGGGTACTTTTATGATATGTGTCCGCTCATTTTGAAACTCAAGCGAAT
ACTTTCAGTTTTTTGTGAAAACCATTTGCAAGTATTCGTATTTGTCCGGA
GCGTGAAAACTCTGAGTGCTTCTGTTTTTGGACTGTTTTTGGACTTTTTT
TTTTTTTCCATAACACAGCAATTCGCTCCGCACTGTCGGCGGCATGGTCG
GATAATTTGAGTATGACATGGTGATGAGCGCTAAAGTTCGGAGTAGACCT
TTTCTCAACTAGTTGGTACCATTGCCCCCAGAGTTTTGGCTGAAGCCGTG
CAGTATCTCCCGTCCGTGGTGAGATGGAGTATCGCCAACCCGAAGCAGCT
CCCCGGTCTTGATGAGGGCACGGTATATTAAAAGCGCATACGAAAACTAC
CAGGTCAACACCTGTTATTCCCAAAACCGAAGTCACAACGTGTGCTCCAC
TATCGACAAACCTGTGTCGGAAAAAGACCCGTGATAGCATCTATGATGCC
CTCGGTGTGAATGCATGCGTTGATCAAGAGATGCAGATTTGGCGCACCTC
GCTGAAACTTGGAGACCTCAAGTAATTAGGTGGAGCATGAAATTTCTGAC
TTCAGATCGTACAGTGTCTGCAAATGCACACACGAACACCGTACCGTATC
TCTTCGACCGTCGGCAAGCATTTCTGCTATGACCGCATGGAGACCTACGC
CAAGAGGTAAGCACGCTTTCGTAGTGAAGATACTCGCCTCAATAGGTGGC
GCATACGTCTGGGAGGCCCGTAGGTGGAGAACCATCGGAGTCCTTCAATT
GGTGATTCTGTGTTTTTGTTGGGCTGAGGAACTACTCTCAAGTTGCCGCA
TTACCTTTGCTAGATGTGACGGACGGCCATGTCTTGGCGCGCCATCATTG
GTTAGTTTTGTTTCGCCATCTGTAACGTTTTCGATATTTGTTCTTTAGTC
GATATGAAAATTACGAGGACCAAGGAAATCGCTGCACCAAGCCCATGCAC
ACATGCACTGGATTTCCTCTACATGTGCATAAGATGCACCCCCCGGACAA
AGACGAATATTCGCAAATATTTTTCACAAAAAATTGATTGTATTCGCCCG
AGTTTCAGTATGAGCTCGTGTGTTCTATGTGCCCCGGACCATCCACGACT
GCTAATAATACTCGTAAATCGAACGAGCACGACTGTATACTTTTATGCTA
CGTGTCCACTCATTTTGAAAATCAGGCGAATACTTTCAGTTTTTTGTAAG
AACCGTTCGCAAGTGTTCGTATTTGTGCGGAGGGTGAAAACATGCTGAAG
AGTTGCGATTTCGTTCATGCTGTCTTTAATCTTCACTAGGTCTACCGTTG
TAGTGCGTACACAATGTGCAAGTGTACTATAGCAATATTGCCGGAATCGT
CTCTTATGTAGCCTGTTCTGTCTAAAACCTTTCTTGTATGTACCCTTTTA
TACATGGACCACTCTCGACTGTCATAAAACAACAGGGTATGGAGTACAAT
TGAGTGTAAATTTGCAAATATACCTTGTCAAGTCCGTTGCCCTTTGGGTC
GCCTTCTGACTGACAATTATATCGCGGGAAGTCTGCGGTCTGTCGGCCCT
TACTGACCACTTGTCATAGAACACAATACATTCCGTGTGAAGGTTAAAGG
TCGCTTCCACATTGCGTGGTAGCTGTTTGATATATGTAGCTTTCGGAGGA
CTTTGTTCGACACGATTTCTGGTGTTGTTTGTACTTGCTTATGTGACCAG
TGACGGTGTTGATGGATACACTTGGAACTAACTACGAAAGCGCTGATACC
GGCAGCTTCACGGCCGAAGGCCGCTCAAAGGCACGATACGAACTTCAGAA
CATGTAACGCCCCCATCGTTTTCTCCCTACCTGCTGGAGTTACCTGGTAT
ACGGTATGAAAGACCTAGCACAGTCACTGTGTATCCGATAACGACTAGTT
TCCCGTTCCTGGCAATTGACTTGAAACCCCAGGGTTGCCGGCGAGCATGG
GGGCTCGGCATGCATCACTTTCAAGCAATGGAGATAAGCGAAGAAAAGGT
GAAAACACGGACTCTGTGCGCGATGATATTTGTGCCCCAAACCTTAGCTA
CCTTGTTCTGTATGATTCTTGTATCTAGCGTACGCTGTAAGGCGCCGGCG
TACTCAGTATATGCGTATGTACGGGAATAAATGCGCCATGTACAGTAGAT
CGCGTCGGCTCACCGACCAAATATAAAATAATATATATATATATATGTAT
ATGGTAGGTGATATGTAAATGACGTGTAAACGGGTGAAATAATACGAGAG
TGATAAAAACTACACATTCAAGGCGATGGCATGTTCATGAAGCATCAGTA
TCATACCTTCATTATGGTAGCTTGTGATCCTTATTTTCTTGGTGCACCTT
TTTGTTCCTTTTTTTCCGATAATGTAATAAGAAAAAATCAAAGAAACTGC
CAAACGGTTTTCCGGAGGCACATCGAGCGCGCGCGACTTCACAAGACAGC
GAAGTCGGGTGACATCATCTTCTCCCAGCGTAGACACGAGCGATAGCGAA
GAAAGCGATGGTTACGAAAGTTACGACGACGCAGATGATGAATGGGACGA
CAACTGGAGCGAGGAAGATAGTTGGGGGGGATCTGGAGATGCTGTGGGGA
CTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2736:5286..9389-

>mRNA_H-paniculata_contig2736.7491.1 ID=mRNA_H-paniculata_contig2736.7491.1|Name=mRNA_H-paniculata_contig2736.7491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig2736:5286..9389- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAAACACAAGCAAGCTTGTTGGCGCTGTGTGCTGTACTCTGCTAGTAT
GGCAGCAGAGAGAGAGATGACGTGGAGGAGGCGATCGCGGGGGAAGAGTC
GTTGCAGCGGTGGTTCGGTTGGATCAGGCGCTGTAGGATTTTTGCTGGTT
GCGATGTGCTCCATCTGCCTGTTATTGCTTCCCGTCTCCACGACGGCTTC
AAAAGACAAAACACAAGCAAGCTTGTTGGCGCTGTGTGCTGTACTCTGCT
AGTATGGCAGCAGAGAGAGAGATGACGTGGAGGAGGCGATCGCGGGGGAA
GAGTCGTTGCAGCGGTGGTTCGGTTGGATCAGGCGCTGTAGGATTTTTGC
TGGTTGCGATGTGCTCCATCTGCCTGTTATTGCTTCCCGTCTCCACGACG
GCTTCAAAAGGGTTGCCGGCGAGCATGGGGGCTCGGCATGCATCACTTTC
AAGCAATGGAGATAAGCGAAGAAAAGGGTTGCCGGCGAGCATGGGGGCTC
GGCATGCATCACTTTCAAGCAATGGAGATAAGCGAAGAAAAGAAAAAATC
AAAGAAACTGCCAAACGGTTTTCCGGAGGCACATCGAGCGCGCGCGACTT
CACAAGACAGCGAAGTCGGGTGACATCATCTTCTCCCAGCGTAGACACGA
GCGATAGCGAAGAAAGCGATGGTTACGAAAGTTACGACGACGCAGATGAT
GAATGGGACGACAACTGGAGCGAGGAAGATAGTTGGGGGGGATCTGGAGA
TGCTGTGGGGACTAAAAAATCAAAGAAACTGCCAAACGGTTTTCCGGAGG
CACATCGAGCGCGCGCGACTTCACAAGACAGCGAAGTCGGGTGACATCAT
CTTCTCCCAGCGTAGACACGAGCGATAGCGAAGAAAGCGATGGTTACGAA
AGTTACGACGACGCAGATGATGAATGGGACGACAACTGGAGCGAGGAAGA
TAGTTGGGGGGGATCTGGAGATGCTGTGGGGACT
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