mRNA_H-paniculata_contig27243.7450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27243.7450.1
Unique NamemRNA_H-paniculata_contig27243.7450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27243.7450.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.630e-41
Identity = 141/311 (45.34%), Postives = 173/311 (55.63%), Query Frame = 3 
Query:  282 PLQAFVPATPSLHRSQDPTITDSSRTPRHRFGRRYYRMENNNLGYRSTSATAITMGMIISSADGSSGSNGLGGGGVLLWLDMRTAILPAQQTLRDLYDGLRVREGAKGRTPEDSDWLFKRVPNPVAAVLFAADSVGRAAEEAKVLIE--GGLPCFMVAADDQ---VVNLSNDEAVGAMLDPMDTPGSLQSSXXXXXXXXXXXXXXXXXXXQRKGEVVLLAAVRPSSWTNGDMPGILRITVSTCADSGKTLAVTVRSIGQLHDTAMAALAAAQTTILGQPASGVGGDGGGG--VALLIEPSVEMWEAGIMYL 1193
            PL A+   +PS  R+  P  T +S         R        LG+R  SAT  T  M  ++  G+         GV LWLDMRTA+LPA QTL+ LY  LR RE A GR+PED+DW   RVPNPV A+L+AA+   RAAEE   L E    LPCF +   D    VV++S+   VG  +DP+   G   + XXXXXXXXXXXXXXXXXXX   G +V L  VRPS W +GDM  +LRI  S CA +GKTL VT                   TT+LG   +G   DG     +ALLIEP  E+WEAG++YL
Sbjct:   46 PLMAYA-FSPSTRRALHPATTTTSS--------RRSSASKPRLGHRHRSATQRTTRMSEAARPGADS-------GVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPV---GDNAAGXXXXXXXXXXXXXXXXXXXXXXG-LVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVT-------------------TTVLGVGGTGAAEDGTTPPPMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27243.7450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI4.630e-4145.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27243contigH-paniculata_contig27243:503..3328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Exons2
Model size1510
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27243.7450.1prot_H-paniculata_contig27243.7450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27243 649..3014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.7602592-UTR-H-paniculata_contig27243:502..6481622929820.7602592-UTR-H-paniculata_contig27243:502..648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27243 503..648 +
1691481026.1001441-UTR-H-paniculata_contig27243:502..6481691481026.1001441-UTR-H-paniculata_contig27243:502..648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27243 503..648 +
1622929820.812439-UTR-H-paniculata_contig27243:3014..33281622929820.812439-UTR-H-paniculata_contig27243:3014..3328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27243 3015..3328 +
1691481026.1341314-UTR-H-paniculata_contig27243:3014..33281691481026.1341314-UTR-H-paniculata_contig27243:3014..3328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27243 3015..3328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.7772593-CDS-H-paniculata_contig27243:648..12121622929820.7772593-CDS-H-paniculata_contig27243:648..1212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27243 649..1212 +
1691481026.1103644-CDS-H-paniculata_contig27243:648..12121691481026.1103644-CDS-H-paniculata_contig27243:648..1212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27243 649..1212 +
1622929820.7923102-CDS-H-paniculata_contig27243:2528..30141622929820.7923102-CDS-H-paniculata_contig27243:2528..3014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27243 2529..3014 +
1691481026.1229944-CDS-H-paniculata_contig27243:2528..30141691481026.1229944-CDS-H-paniculata_contig27243:2528..3014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27243 2529..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27243.7450.1

>prot_H-paniculata_contig27243.7450.1 ID=prot_H-paniculata_contig27243.7450.1|Name=mRNA_H-paniculata_contig27243.7450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=350bp
MRLAMLPFGCLLATTAQTQKQRLPASSPLFPPDVFNCGNPFISRTPLQAF
VPATPSLHRSQDPTITDSSRTPRHRFGRRYYRMENNNLGYRSTSATAITM
GMIISSADGSSGSNGLGGGGVLLWLDMRTAILPAQQTLRDLYDGLRVREG
AKGRTPEDSDWLFKRVPNPVAAVLFAADSVGRAAEEAKVLIEGGLPCFMV
AADDQVVNLSNDEAVGAMLDPMDTPGSLQSSSGGSGGGVNAAVAAAAAPS
QRKGEVVLLAAVRPSSWTNGDMPGILRITVSTCADSGKTLAVTVRSIGQL
HDTAMAALAAAQTTILGQPASGVGGDGGGGVALLIEPSVEMWEAGIMYL*
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mRNA from alignment at H-paniculata_contig27243:503..3328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27243.7450.1 ID=mRNA_H-paniculata_contig27243.7450.1|Name=mRNA_H-paniculata_contig27243.7450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2826bp|location=Sequence derived from alignment at H-paniculata_contig27243:503..3328+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGGTGTAATCCAAAGACAAAGCAAGGTACCTGCCTCACTTGTATCTT
GGGATTGCGGCACTACAACAGCAGGCGCACACCACCAGAGAACCGCGGAG
AAGTTCGTTTTGAACGTACATCGATTATCACGGGACGGCATAGGACATGA
GACTGGCAATGTTGCCGTTTGGCTGTTTGCTTGCAACAACCGCGCAAACA
CAGAAGCAACGACTACCAGCCTCTTCCCCACTCTTCCCGCCGGACGTGTT
CAACTGCGGCAACCCTTTTATCAGCAGAACGCCTCTGCAGGCCTTCGTTC
CCGCCACGCCTTCCCTGCACCGGTCGCAAGACCCCACAATTACAGACAGC
TCTAGAACCCCGCGTCATCGATTCGGACGACGGTATTATCGCATGGAGAA
CAACAACCTAGGCTACCGATCAACCTCCGCCACAGCCATAACAATGGGGA
TGATTATCTCTTCTGCGGACGGTAGTAGTGGCAGCAACGGCCTGGGCGGG
GGCGGCGTGTTGCTTTGGCTCGACATGAGAACGGCGATCCTGCCCGCGCA
GCAGACTCTCAGGGATCTTTACGATGGCCTACGAGTAAGGGAAGGAGCGA
AGGGTCGGACGCCGGAAGATAGCGACTGGCTGTTTAAGCGAGTGCCGAAT
CCGGTAGCGGCTGTTTTGTTTGCCGCGGATTCGGTGGGACGGGCAGCGGA
GGAGGCGAAGGTACGACTCGTGTGCATGCTGATGGTGCAGGGATATATAG
CACACGACACAACTTTACGGATCGGAGGTTGAGGACTTGAGGCTTGTAAT
TTGTTGTGTTCCTTCCTTGAGAAGAATCGATTTGAAGAAATGTTGCTTGC
CCACGTTGTCGCCCCATCCTAATTCCTACCATAATACATGTAAGATGTAA
GTTTTTTCCCCACGGGATCGTCGGAAAATGAATGTATCAGACCGTCTGGT
CGTTTCTTTTATAAGCTAAGCACGATTGTATTGAAACGTCCAAAAATCGA
ATGTTCGAGGCGAGAATCCGACGCTCAATATAAACCACACAATAAAAATG
AACCTGAAGCCATTTATTTCGGGTCAGGCCATATATACATTGAGACTAGA
TATCGTGAGGCTATTTACCGTAAGGCTATATACCGTGAGGCTCGCGCCAA
CGAGGCGTCTCTAATAAGCTGTCGTGCCTTCTACATGTGCATATTGAAAA
AAATCATGTTTGTATATATTTATGCTAGTGCAGGCAGTACCATTGCCACG
GTTATGCTCTTGCAGTCATGCTCTAGCGTTTTGTCCTTCTCGTACTAAAA
TGTTTATGCTAGTAACCCATGATCGACAAACAGTGGCTCACTGGGCTCTC
AAGGACTCTCTAAGCTCTTCCGGTATGCACAATGCCCTCAACCCCTGGCG
CGCCAGCAGCTATCGTACCTAAATATCAAGTACAAGCTTCAACAATGGAT
AACGGTGTAAGTTACTCTGAGTGCAGAGTTGGAAAAATGTACCGAAACTG
GCATCACTACGTTCGATGTTGAATAGTCCACACTGGAGCTATCGCTTTAC
GATGTCCATCACAGTGTAAATACACAGTCCATATTATCGTTTGTGTCTCG
GCCGGTAGTACCAGACTACCTACTCCGTGGCGAAGCGGATAACACGAAGT
ACATTCATAATCACAAAATTGCTAAAGGGGAGGGGGGGGGGTCACGTCAA
AACGATGGGTACATGACCTACGTTGTATGTAGGTAGGTGTATGTACATGT
ATGCATACGACCGCCCCTGAGGCCTTACTGCAACTTGCTTGGGGTGGCAA
TAGATGACAAACTAACCGCGAAATAAATACAGGTTGATTTGAGGAGAACA
GGTGAAAAACTAGTCTTTGTTATATTCCAATTTCCGGGACTGTACAGTAC
AGTACAGTACAGTACTGTAATTACACTCTTACAGAAAATGCAAAATCCCC
TTGTTTTCGGGCCCACTCCTCACATCATATACCCGCATGTCCCTGCCTCT
CCCTCCTATGGTGGACGTAACAACAGGTTCTAATCGAGGGCGGGTTGCCC
TGCTTCATGGTAGCCGCCGACGACCAAGTCGTGAACCTTTCCAATGATGA
AGCCGTGGGCGCTATGCTGGACCCAATGGATACCCCAGGATCTCTACAGA
GTAGTAGCGGTGGTAGTGGTGGCGGGGTAAATGCTGCCGTGGCTGCGGCC
GCAGCACCGAGTCAGAGGAAAGGGGAGGTAGTGTTGTTGGCAGCGGTGCG
TCCGTCGAGCTGGACAAACGGCGATATGCCTGGTATCTTGAGAATCACAG
TTAGTACTTGCGCGGACTCTGGTAAGACCCTCGCCGTGACAGTGAGAAGC
ATAGGACAGCTGCATGATACTGCCATGGCGGCGTTGGCCGCGGCACAAAC
TACAATCTTGGGACAACCAGCGAGCGGGGTGGGGGGTGATGGCGGCGGAG
GCGTTGCGCTGTTGATTGAGCCGTCCGTGGAGATGTGGGAGGCTGGCATT
ATGTACTTGTGAGACACGGAGGTAGATATGTTGGTTCGGGCCAGGAAACT
TTTTTTTGAGTTTTGTATTTTTAAGCGGGTTTTTTTGTTTTTTCGGCTGT
TACGTGGGGGCGGGGAAGTGCTTGCTGTATATTTTATTTAATCTTACGTG
TATGGTCTTTCTTTTTGTTGAAATAATTTCTTTCCTACTCATGCATGTGT
TTCTTTTCTGTAGTGTGTTGTGCTACGAAAAGGGTGGCGAACAAAAACAC
AGGCGGACGGCATTTTTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAAC
CTTTTCCGCTGCTTCCACATTCAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig27243:503..3328+

>mRNA_H-paniculata_contig27243.7450.1 ID=mRNA_H-paniculata_contig27243.7450.1|Name=mRNA_H-paniculata_contig27243.7450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at H-paniculata_contig27243:503..3328+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACTGGCAATGTTGCCGTTTGGCTGTTTGCTTGCAACAACCGCGCA
AACACAGAAGCAACGACTACCAGCCTCTTCCCCACTCTTCCCGCCGGACG
TGTTCAACTGCGGCAACCCTTTTATCAGCAGAACGCCTCTGCAGGCCTTC
GTTCCCGCCACGCCTTCCCTGCACCGGTCGCAAGACCCCACAATTACAGA
CAGCTCTAGAACCCCGCGTCATCGATTCGGACGACGGTATTATCGCATGG
AGAACAACAACCTAGGCTACCGATCAACCTCCGCCACAGCCATAACAATG
GGGATGATTATCTCTTCTGCGGACGGTAGTAGTGGCAGCAACGGCCTGGG
CGGGGGCGGCGTGTTGCTTTGGCTCGACATGAGAACGGCGATCCTGCCCG
CGCAGCAGACTCTCAGGGATCTTTACGATGGCCTACGAGTAAGGGAAGGA
GCGAAGGGTCGGACGCCGGAAGATAGCGACTGGCTGTTTAAGCGAGTGCC
GAATCCGGTAGCGGCTGTTTTGTTTGCCGCGGATTCGGTGGGACGGGCAG
CGGAGGAGGCGAAGATGAGACTGGCAATGTTGCCGTTTGGCTGTTTGCTT
GCAACAACCGCGCAAACACAGAAGCAACGACTACCAGCCTCTTCCCCACT
CTTCCCGCCGGACGTGTTCAACTGCGGCAACCCTTTTATCAGCAGAACGC
CTCTGCAGGCCTTCGTTCCCGCCACGCCTTCCCTGCACCGGTCGCAAGAC
CCCACAATTACAGACAGCTCTAGAACCCCGCGTCATCGATTCGGACGACG
GTATTATCGCATGGAGAACAACAACCTAGGCTACCGATCAACCTCCGCCA
CAGCCATAACAATGGGGATGATTATCTCTTCTGCGGACGGTAGTAGTGGC
AGCAACGGCCTGGGCGGGGGCGGCGTGTTGCTTTGGCTCGACATGAGAAC
GGCGATCCTGCCCGCGCAGCAGACTCTCAGGGATCTTTACGATGGCCTAC
GAGTAAGGGAAGGAGCGAAGGGTCGGACGCCGGAAGATAGCGACTGGCTG
TTTAAGCGAGTGCCGAATCCGGTAGCGGCTGTTTTGTTTGCCGCGGATTC
GGTGGGACGGGCAGCGGAGGAGGCGAAGGTTCTAATCGAGGGCGGGTTGC
CCTGCTTCATGGTAGCCGCCGACGACCAAGTCGTGAACCTTTCCAATGAT
GAAGCCGTGGGCGCTATGCTGGACCCAATGGATACCCCAGGATCTCTACA
GAGTAGTAGCGGTGGTAGTGGTGGCGGGGTAAATGCTGCCGTGGCTGCGG
CCGCAGCACCGAGTCAGAGGAAAGGGGAGGTAGTGTTGTTGGCAGCGGTG
CGTCCGTCGAGCTGGACAAACGGCGATATGCCTGGTATCTTGAGAATCAC
AGTTAGTACTTGCGCGGACTCTGGTAAGACCCTCGCCGTGACAGTGAGAA
GCATAGGACAGCTGCATGATACTGCCATGGCGGCGTTGGCCGCGGCACAA
ACTACAATCTTGGGACAACCAGCGAGCGGGGTGGGGGGTGATGGCGGCGG
AGGCGTTGCGCTGTTGATTGAGCCGTCCGTGGAGATGTGGGAGGCTGGCA
TTATGTACTTGTGAGTTCTAATCGAGGGCGGGTTGCCCTGCTTCATGGTA
GCCGCCGACGACCAAGTCGTGAACCTTTCCAATGATGAAGCCGTGGGCGC
TATGCTGGACCCAATGGATACCCCAGGATCTCTACAGAGTAGTAGCGGTG
GTAGTGGTGGCGGGGTAAATGCTGCCGTGGCTGCGGCCGCAGCACCGAGT
CAGAGGAAAGGGGAGGTAGTGTTGTTGGCAGCGGTGCGTCCGTCGAGCTG
GACAAACGGCGATATGCCTGGTATCTTGAGAATCACAGTTAGTACTTGCG
CGGACTCTGGTAAGACCCTCGCCGTGACAGTGAGAAGCATAGGACAGCTG
CATGATACTGCCATGGCGGCGTTGGCCGCGGCACAAACTACAATCTTGGG
ACAACCAGCGAGCGGGGTGGGGGGTGATGGCGGCGGAGGCGTTGCGCTGT
TGATTGAGCCGTCCGTGGAGATGTGGGAGGCTGGCATTATGTACTTGTGA
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