mRNA_H-paniculata_contig27186.7436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI) HSP 1 Score: 142 bits (359), Expect = 4.610e-39 Identity = 81/152 (53.29%), Postives = 104/152 (68.42%), Query Frame = 1
Query: 112 DVSSHTLPASFVFLAVQLAFRKPLTVQKTSKNASSKRSQQRALENTERR--------LTKGGAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLACDRFL 543
+ SS+TLPA+F F+AVQL F+ T Q T K KR + + T+R+ T G +LP+DVA K ILAA+KDLHGE+ S+ Y VDVLSWD SG+G+LRV SLVPIRAAL+ V S GD+ C++ V +VSPFLAGLAC+R+L
Sbjct: 2 EASSYTLPAAFCFIAVQLTFQ--ATRQATPKRP--KRGKVKGGGTTQRQQQAPQGSAATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: UPI001C64A4DA (ribonuclease P protein subunit p14 n=1 Tax=Centrocercus urophasianus TaxID=9002 RepID=UPI001C64A4DA) HSP 1 Score: 58.2 bits (139), Expect = 4.260e-7 Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 253 RRLTKGGAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLA 528
RR GA P LK L++AAL++LHGE+ VDVL+++ S LRV LV + +ALTL Y + C+ V SPFL LA
Sbjct: 33 RRELPDGAARPGAPQLKQLVVAALRELHGEV-GAALPVDVLAYEEKSLCAVLRVISGGLVKLWSALTLQGFYQNRRCAFRVLQTSPFLLALA 123
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: UPI0003C10CDB (ribonuclease P protein subunit p14 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C10CDB) HSP 1 Score: 56.6 bits (135), Expect = 1.590e-6 Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 301 KGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLA 528
K LI+AALK+LHGE + DVL+++ + +RV S LV + +A+TL+ Y + C++ VT VSPFL L+
Sbjct: 51 KQLIIAALKELHGETGAALPF-DVLTFEEKTTSAIVRVYSSGLVKLWSAITLLGYYQNQKCAIRVTQVSPFLLALS 125
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: A0A7K9YJJ3_9GALL (RPP14 protein (Fragment) n=7 Tax=Galliformes TaxID=8976 RepID=A0A7K9YJJ3_9GALL) HSP 1 Score: 56.6 bits (135), Expect = 1.650e-6 Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1
Query: 271 GAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDV---SPFLAGLA 528
GA P LK L+LAAL++LHGE+ VDVL+++ S LRV S LV + +ALTL Y + C+ V V SPFL LA
Sbjct: 40 GAARPGAPQLKQLVLAALRELHGEV-GAALPVDVLAYEEKSLCAILRVVSSGLVKLWSALTLQGFYQNRRCAFRVLQVGGTSPFLLALA 127
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: A0A4W3J7P9_CALMI (Uncharacterized protein n=5 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J7P9_CALMI) HSP 1 Score: 55.8 bits (133), Expect = 2.820e-6 Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 292 VALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLACD 534
V K LI+AAL+DLHGE+ VDVL+++ LRV LV + +ALTL+ Y C+ V VSPFL L+ D
Sbjct: 40 VQFKHLIVAALRDLHGEI-GAALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALSGD 119
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: UPI0004574E47 (ribonuclease P protein subunit p14 isoform X1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI0004574E47) HSP 1 Score: 55.8 bits (133), Expect = 4.010e-6 Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 292 VALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLACD 534
V K LI+AAL+DLHGE+ VDVL+++ LRV LV + +ALTL+ Y C+ V VSPFL L+ D
Sbjct: 58 VQFKHLIVAALRDLHGEI-GAALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALSGD 137
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: A0A226PF64_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226PF64_COLVI) HSP 1 Score: 55.8 bits (133), Expect = 5.240e-6 Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 271 GAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGL 525
GA P LK L+LAAL++LHGE+ VDVL++D S LRV S LV + +ALTL SY + C+ V F A L
Sbjct: 34 GAARPGAPQLKQLVLAALRELHGEV-GAALPVDVLAYDEKSLSAILRVVSSGLVKLWSALTLQGSYQNRRCAFRVLQEIRFPAPL 117
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: A0A226NF70_CALSU (Uncharacterized protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226NF70_CALSU) HSP 1 Score: 54.3 bits (129), Expect = 2.450e-5 Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 271 GAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDV 504
GA P LK L+LAAL++LHGE+ VDVL +D S LRV S LV + +ALTL SY + C+ V V
Sbjct: 96 GAARPGAPQLKQLVLAALRELHGEV-GAALPVDVLVYDEKSLSAILRVVSSGLVKLWSALTLQGSYQNRRCAFRVLQV 172
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: A0A7L0PTX3_9AVES (RPP14 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L0PTX3_9AVES) HSP 1 Score: 52.0 bits (123), Expect = 6.770e-5 Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 259 LTKGGAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSP 510
L GGA PS K L++AAL++LHGE+ VDVL+++ + LRV S LV + +ALTL+ Y + C+ V V P
Sbjct: 33 LPDGGAR-PSVAQFKQLVVAALRELHGEV-GAALPVDVLTYEEKTLSAILRVISSGLVKLWSALTLLGFYQNRRCAFRVLQVKP 114
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Match: UPI00093A4F6B (LOW QUALITY PROTEIN: ribonuclease P protein subunit p14 n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI00093A4F6B) HSP 1 Score: 52.0 bits (123), Expect = 7.040e-5 Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1
Query: 271 GAFLPSDVALKGLILAALKDLHGEMESVTYLVDVLSWDPASGKGQLRVAVSSLVPIRAALTLVSSYGDILCSVHVTDVSPFLAGLACDR 537
GA P LK L++AAL++LHGE+ VDVL ++ S LRV V + +ALTL Y + C+ V SPF + ++ ++
Sbjct: 10 GAARPGAPQLKQLVVAALRELHGEV-GAALPVDVLVYEEKSLCAVLRVVSGGFVKLWSALTLQGFYQNRRCAFRVLQTSPFXSCVSWEQ 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27186.7436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27186.7436.1 >prot_H-paniculata_contig27186.7436.1 ID=prot_H-paniculata_contig27186.7436.1|Name=mRNA_H-paniculata_contig27186.7436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp MADVSSHTLPASFVFLAVQLAFRKPLTVQKTSKNASSKRSQQRALENTERback to top mRNA from alignment at H-paniculata_contig27186:1388..2914- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27186.7436.1 ID=mRNA_H-paniculata_contig27186.7436.1|Name=mRNA_H-paniculata_contig27186.7436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1527bp|location=Sequence derived from alignment at H-paniculata_contig27186:1388..2914- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27186:1388..2914- >mRNA_H-paniculata_contig27186.7436.1 ID=mRNA_H-paniculata_contig27186.7436.1|Name=mRNA_H-paniculata_contig27186.7436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig27186:1388..2914- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |