mRNA_H-paniculata_contig27168.7430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27168.7430.1
Unique NamemRNA_H-paniculata_contig27168.7430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27168.7430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27168contigH-paniculata_contig27168:1281..1895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size615
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.583764-CDS-H-paniculata_contig27168:1280..18951622929817.583764-CDS-H-paniculata_contig27168:1280..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27168 1281..1895 +
1691481024.67864-CDS-H-paniculata_contig27168:1280..18951691481024.67864-CDS-H-paniculata_contig27168:1280..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27168 1281..1895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27168.7430.1prot_H-paniculata_contig27168.7430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27168 1281..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27168.7430.1

>prot_H-paniculata_contig27168.7430.1 ID=prot_H-paniculata_contig27168.7430.1|Name=mRNA_H-paniculata_contig27168.7430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MYPRPNLSQTDHVEFDLQSAVVEPLADNSNNNNDDSNQTATATQHAYTTS
SSSSSSAAAAGAAATTTIGDTIFRPRRAHAFCIISSSSSNNSSNNNSSNA
PPRRNLKLKNTIMTTLTRAASASPKPTHSIYTSISTPTNASPAEELSGSL
PTEDKTLSMVRVTSMPTPITGGGGSGISSFFQGKEEAAQGATGDSSDSRS
SSCSG
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mRNA from alignment at H-paniculata_contig27168:1281..1895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27168.7430.1 ID=mRNA_H-paniculata_contig27168.7430.1|Name=mRNA_H-paniculata_contig27168.7430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at H-paniculata_contig27168:1281..1895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCCACGACCCAACCTCTCACAGACAGACCATGTGGAGTTCGACCT
CCAGTCAGCCGTCGTCGAGCCCCTGGCTGACAACAGTAATAATAACAACG
ATGACAGCAACCAAACAGCGACGGCGACTCAACACGCGTACACAACATCA
TCATCATCATCATCATCAGCAGCAGCAGCAGGAGCAGCAGCAACAACAAC
AATAGGAGACACTATTTTTCGACCCCGCAGAGCACACGCCTTTTGCATCA
TATCTAGCAGCAGCAGCAACAACAGTAGCAACAACAACAGCAGCAACGCA
CCCCCGCGGAGAAATTTGAAATTGAAAAATACTATCATGACGACGTTAAC
GCGGGCCGCGTCAGCGTCCCCCAAACCAACCCACTCAATCTATACTTCAA
TATCAACACCGACCAATGCCTCCCCGGCTGAAGAGTTATCAGGGTCCCTT
CCTACTGAAGACAAGACGCTCTCTATGGTCCGGGTGACCTCCATGCCAAC
GCCCATCACAGGCGGGGGGGGGAGCGGTATCTCTTCATTTTTTCAAGGCA
AAGAGGAAGCAGCACAGGGGGCGACGGGGGACAGCAGTGATAGTAGAAGC
AGTAGTTGTAGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig27168:1281..1895+

>mRNA_H-paniculata_contig27168.7430.1 ID=mRNA_H-paniculata_contig27168.7430.1|Name=mRNA_H-paniculata_contig27168.7430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig27168:1281..1895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCCACGACCCAACCTCTCACAGACAGACCATGTGGAGTTCGACCT
CCAGTCAGCCGTCGTCGAGCCCCTGGCTGACAACAGTAATAATAACAACG
ATGACAGCAACCAAACAGCGACGGCGACTCAACACGCGTACACAACATCA
TCATCATCATCATCATCAGCAGCAGCAGCAGGAGCAGCAGCAACAACAAC
AATAGGAGACACTATTTTTCGACCCCGCAGAGCACACGCCTTTTGCATCA
TATCTAGCAGCAGCAGCAACAACAGTAGCAACAACAACAGCAGCAACGCA
CCCCCGCGGAGAAATTTGAAATTGAAAAATACTATCATGACGACGTTAAC
GCGGGCCGCGTCAGCGTCCCCCAAACCAACCCACTCAATCTATACTTCAA
TATCAACACCGACCAATGCCTCCCCGGCTGAAGAGTTATCAGGGTCCCTT
CCTACTGAAGACAAGACGCTCTCTATGGTCCGGGTGACCTCCATGCCAAC
GCCCATCACAGGCGGGGGGGGGAGCGGTATCTCTTCATTTTTTCAAGGCA
AAGAGGAAGCAGCACAGGGGGCGACGGGGGACAGCAGTGATAGTAGAAGC
AGTAGTTGTAGTGGTATGTACCCACGACCCAACCTCTCACAGACAGACCA
TGTGGAGTTCGACCTCCAGTCAGCCGTCGTCGAGCCCCTGGCTGACAACA
GTAATAATAACAACGATGACAGCAACCAAACAGCGACGGCGACTCAACAC
GCGTACACAACATCATCATCATCATCATCATCAGCAGCAGCAGCAGGAGC
AGCAGCAACAACAACAATAGGAGACACTATTTTTCGACCCCGCAGAGCAC
ACGCCTTTTGCATCATATCTAGCAGCAGCAGCAACAACAGTAGCAACAAC
AACAGCAGCAACGCACCCCCGCGGAGAAATTTGAAATTGAAAAATACTAT
CATGACGACGTTAACGCGGGCCGCGTCAGCGTCCCCCAAACCAACCCACT
CAATCTATACTTCAATATCAACACCGACCAATGCCTCCCCGGCTGAAGAG
TTATCAGGGTCCCTTCCTACTGAAGACAAGACGCTCTCTATGGTCCGGGT
GACCTCCATGCCAACGCCCATCACAGGCGGGGGGGGGAGCGGTATCTCTT
CATTTTTTCAAGGCAAAGAGGAAGCAGCACAGGGGGCGACGGGGGACAGC
AGTGATAGTAGAAGCAGTAGTTGTAGTGGT
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