mRNA_H-paniculata_contig11157.740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11157.740.1
Unique NamemRNA_H-paniculata_contig11157.740.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11157.740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11157contigH-paniculata_contig11157:1986..2628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11157.740.1prot_H-paniculata_contig11157.740.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11157 2096..2458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.6504624-UTR-H-paniculata_contig11157:1985..20951622928820.6504624-UTR-H-paniculata_contig11157:1985..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11157 1986..2095 +
1691480633.141839-UTR-H-paniculata_contig11157:1985..20951691480633.141839-UTR-H-paniculata_contig11157:1985..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11157 1986..2095 +
1622928820.6861355-UTR-H-paniculata_contig11157:2458..26281622928820.6861355-UTR-H-paniculata_contig11157:2458..2628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11157 2459..2628 +
1691480633.1689904-UTR-H-paniculata_contig11157:2458..26281691480633.1689904-UTR-H-paniculata_contig11157:2458..2628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11157 2459..2628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.671476-CDS-H-paniculata_contig11157:2095..24581622928820.671476-CDS-H-paniculata_contig11157:2095..2458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11157 2096..2458 +
1691480633.1583004-CDS-H-paniculata_contig11157:2095..24581691480633.1583004-CDS-H-paniculata_contig11157:2095..2458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11157 2096..2458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11157.740.1

>prot_H-paniculata_contig11157.740.1 ID=prot_H-paniculata_contig11157.740.1|Name=mRNA_H-paniculata_contig11157.740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MHALRGETQDRDQLQVEVFNRMRERDRDWLTTYMLPRELGKKHITFALSL
TRHRTRTLCCNRCERTMRIPDEHQWHRYTMETLEMRVVKSFLAFIAASLV
AIRTDLSVGDNQHLEELIIP*
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mRNA from alignment at H-paniculata_contig11157:1986..2628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11157.740.1 ID=mRNA_H-paniculata_contig11157.740.1|Name=mRNA_H-paniculata_contig11157.740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=643bp|location=Sequence derived from alignment at H-paniculata_contig11157:1986..2628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAACGCTGGCTTATCGGATCCTGCGTAGCATCACGGTCATTTACAGC
AGATGAAGTTCTGGTGTGGGTGAGATGTTTTGAACAACAGGACACGCGCT
CTACAAATCAATGCACGCTTTGCGGGGAGAAACACAGGACCGTGACCAAC
TCCAAGTTGAGGTCTTTAACAGGATGCGTGAGCGCGATCGAGATTGGCTG
ACGACTTACATGCTGCCACGTGAACTGGGTAAAAAACACATCACATTCGC
CCTCTCATTGACGAGGCACCGTACTCGAACGCTATGCTGCAACAGGTGTG
AAAGGACGATGCGAATACCTGACGAGCATCAATGGCATCGATACACAATG
GAGACACTAGAAATGCGTGTCGTGAAGAGCTTTCTCGCGTTCATCGCGGC
CTCACTGGTTGCGATACGAACTGACCTTAGCGTCGGCGATAATCAACATC
TGGAAGAATTGATTATTCCCTAGTAAACAGCAAGAAGTCACTTATATCAC
ACAGAAATGCACTAGTCATTAGGTTTCAATTCAGCAGCTCGGAGAGGGGA
AGACGTTTATACTGCTGCCTGGCCCACTTGAACGGCAGCACGAAATACTA
TTTATGCCTCTCTCTGCGTGATATCCAGAAAATGATGGCAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11157:1986..2628+

>mRNA_H-paniculata_contig11157.740.1 ID=mRNA_H-paniculata_contig11157.740.1|Name=mRNA_H-paniculata_contig11157.740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig11157:1986..2628+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGCTTTGCGGGGAGAAACACAGGACCGTGACCAACTCCAAGTTGA
GGTCTTTAACAGGATGCGTGAGCGCGATCGAGATTGGCTGACGACTTACA
TGCTGCCACGTGAACTGGGTAAAAAACACATCACATTCGCCCTCTCATTG
ACGAGGCACCGTACTCGAACGCTATGCTGCAACAGGTGTGAAAGGACGAT
GCGAATACCTGACGAGCATCAATGGCATCGATACACAATGGAGACACTAG
AAATGCGTGTCGTGAAGAGCTTTCTCGCGTTCATCGCGGCCTCACTGGTT
GCGATACGAACTGACCTTAGCGTCGGCGATAATCAACATCTGGAAGAATT
GATTATTCCCTAGATGCACGCTTTGCGGGGAGAAACACAGGACCGTGACC
AACTCCAAGTTGAGGTCTTTAACAGGATGCGTGAGCGCGATCGAGATTGG
CTGACGACTTACATGCTGCCACGTGAACTGGGTAAAAAACACATCACATT
CGCCCTCTCATTGACGAGGCACCGTACTCGAACGCTATGCTGCAACAGGT
GTGAAAGGACGATGCGAATACCTGACGAGCATCAATGGCATCGATACACA
ATGGAGACACTAGAAATGCGTGTCGTGAAGAGCTTTCTCGCGTTCATCGC
GGCCTCACTGGTTGCGATACGAACTGACCTTAGCGTCGGCGATAATCAAC
ATCTGGAAGAATTGATTATTCCCTAG
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