mRNA_H-paniculata_contig26873.7350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26873.7350.1
Unique NamemRNA_H-paniculata_contig26873.7350.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26873.7350.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.140e-15
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 VKDSLHPRGTVAIMVPHPWHLHAGRIHSALTHASVGLHVEDHPLLLQYKGMRAGRTSQNAVNRLRYNADMVMLAHND 231
            V+  +HP GT+A++VPHPW  H  R+  A+  A VGL VEDHPL+L Y     GR    A N L+ + DMV+L HN+
Sbjct:  384 VRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26873.7350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE4.140e-1548.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26873contigH-paniculata_contig26873:863..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.7508764-CDS-H-paniculata_contig26873:863..10151622929806.7508764-CDS-H-paniculata_contig26873:863..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26873 864..1015 -
1691481019.4732797-CDS-H-paniculata_contig26873:863..10151691481019.4732797-CDS-H-paniculata_contig26873:863..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26873 864..1015 -
1622929806.7638073-CDS-H-paniculata_contig26873:1358..14401622929806.7638073-CDS-H-paniculata_contig26873:1358..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26873 1359..1440 -
1691481019.4837542-CDS-H-paniculata_contig26873:1358..14401691481019.4837542-CDS-H-paniculata_contig26873:1358..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26873 1359..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26873.7350.1prot_H-paniculata_contig26873.7350.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26873 864..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26873.7350.1

>prot_H-paniculata_contig26873.7350.1 ID=prot_H-paniculata_contig26873.7350.1|Name=mRNA_H-paniculata_contig26873.7350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
VKDSLHPRGTVAIMVPHPWHLHAGRIHSALTHASVGLHVEDHPLLLQYKG
MRAGRTSQNAVNRLRYNADMVMLAHNDP
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mRNA from alignment at H-paniculata_contig26873:863..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26873.7350.1 ID=mRNA_H-paniculata_contig26873.7350.1|Name=mRNA_H-paniculata_contig26873.7350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig26873:863..1440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAGTATTTTGTCTTTG
CTGTTTGTGCAACTTTATAAAAAATATGCCATTGCTGTAACATGGAAGCC
CATCGACCGCTTCAGCCCACTATACCCAATGGTTTATGCGAGGAGAAAGT
AGCGTGTACACGGCATAATAGAGTGTGCAACATGATTGCATCAAGGTGTA
ATGTGAACGTGCAATTGGGGTATCACTGGACGTCCATTCCACGTTTTTTC
ACATGTTGCACGATAAACTCCGCCTGTTAAGGCATATGAACGACCACGGA
GGTATTGGAGCACACACACATCGGGTGTATTCCAAACATCAACGCATTTC
GTCGACTTTCTTACTGTGTTTGCAGGTGCTCTGACCCATGCATCGGTAGG
ATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGG
CCGGGCGCACATCGCAGAATGCTGTCAATCGTCTACGTTACAATGCAGAC
ATGGTGATGTTGGCACACAACGACCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26873:863..1440-

>mRNA_H-paniculata_contig26873.7350.1 ID=mRNA_H-paniculata_contig26873.7350.1|Name=mRNA_H-paniculata_contig26873.7350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig26873:863..1440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAAAGACAGCCTGCAC
CCCCGTGGGACTGTTGCAATCATGGTACCTCACCCTTGGCATCTGCACGC
TGGACGCATCCACAGTGCTCTGACCCATGCATCGGTAGGATTGCACGTTG
AGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACA
TCGCAGAATGCTGTCAATCGTCTACGTTACAATGCAGACATGGTGATGTT
GGCACACAACGACCCGGTGCTCTGACCCATGCATCGGTAGGATTGCACGT
TGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCA
CATCGCAGAATGCTGTCAATCGTCTACGTTACAATGCAGACATGGTGATG
TTGGCACACAACGACCCG
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