mRNA_H-paniculata_contig2687.7349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2687.7349.1
Unique NamemRNA_H-paniculata_contig2687.7349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.260e-53
Identity = 85/108 (78.70%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 IGGMTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCAFQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAMDTLNN 324
            +GG+TGITFGAMDGH+A+R+D +GKFPTTALKTKEF RLTALSGTIFTGFFC +QG+KYGAKLAR EDDF+NVLIASAG+ AP++  PA R+R+PYA ILIAMDTLNN
Sbjct:   59 VGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNN 166
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BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.770e-31
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    4 GGMTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCAFQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAMDTLNN 324
            GG+TGI FG MD H+ +   K G+F T A K KE  R+TA +GT+F G+F A+QGIKYG +  R ED FFNV +A+A ++AP+VPFPA RAR PY   L+A+DTLN+
Sbjct:   61 GGVTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNS 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2687.7349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWV5_9PHAE1.260e-5378.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQU0_9STRA1.770e-3156.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2687contigH-paniculata_contig2687:13401..15391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue9.4e-10
Seed eggNOG ortholog65071.PYU1_T013902
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs1MGYM@121069,2DR8T@1,2S6DK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons3
Model size1043
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2687.7349.1prot_H-paniculata_contig2687.7349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2687 14111..15382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.6223083-UTR-H-paniculata_contig2687:13400..141101622929806.6223083-UTR-H-paniculata_contig2687:13400..14110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2687 13401..14110 -
1691481019.424432-UTR-H-paniculata_contig2687:13400..141101691481019.424432-UTR-H-paniculata_contig2687:13400..14110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2687 13401..14110 -
1622929806.7076929-UTR-H-paniculata_contig2687:15382..153911622929806.7076929-UTR-H-paniculata_contig2687:15382..15391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2687 15383..15391 -
1691481019.4638546-UTR-H-paniculata_contig2687:15382..153911691481019.4638546-UTR-H-paniculata_contig2687:15382..15391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2687 15383..15391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.6502104-CDS-H-paniculata_contig2687:14110..142971622929806.6502104-CDS-H-paniculata_contig2687:14110..14297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 14111..14297 -
1691481019.4366827-CDS-H-paniculata_contig2687:14110..142971691481019.4366827-CDS-H-paniculata_contig2687:14110..14297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 14111..14297 -
1622929806.6696568-CDS-H-paniculata_contig2687:14688..148001622929806.6696568-CDS-H-paniculata_contig2687:14688..14800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 14689..14800 -
1691481019.446357-CDS-H-paniculata_contig2687:14688..148001691481019.446357-CDS-H-paniculata_contig2687:14688..14800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 14689..14800 -
1622929806.6860468-CDS-H-paniculata_contig2687:15357..153821622929806.6860468-CDS-H-paniculata_contig2687:15357..15382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 15358..15382 -
1691481019.4550421-CDS-H-paniculata_contig2687:15357..153821691481019.4550421-CDS-H-paniculata_contig2687:15357..15382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2687 15358..15382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2687.7349.1

>prot_H-paniculata_contig2687.7349.1 ID=prot_H-paniculata_contig2687.7349.1|Name=mRNA_H-paniculata_contig2687.7349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MTGITFGAMDGHKALREDKLGKFPTTALKTKEFMRLTALSGTIFTGFFCA
FQGIKYGAKLARNEDDFFNVLIASAGAVAPLVPFPAARARFPYAVILIAM
DTLNNML*
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mRNA from alignment at H-paniculata_contig2687:13401..15391-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2687.7349.1 ID=mRNA_H-paniculata_contig2687.7349.1|Name=mRNA_H-paniculata_contig2687.7349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1991bp|location=Sequence derived from alignment at H-paniculata_contig2687:13401..15391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGGGGCATGACTGGAATCACGTTCGGAGCAAGTGAGTATTCGTTAAT
GGTGTGCCGCAAGGTCTTGTGTGTTGTCTTCGTATGCGAACTCAGGTGTC
GTTTGTTCGTTCTCCACTGTTTGACTGCTTCATGTGTGACCTCACGACCC
AATTCCGACGAGCTCCAAGGCTGCATGGTTTACTGTCGTGTCGCGCGCGT
TGCGGCAGGGTTTCCTTCCAGACAAGAGAGGCTGAGACATGAGACCTGTA
TCTATTTTGCCTTGTAGTGTATGTCGTGGCTGTTGCCTTCCTGCAGCAGC
CGTTGTTCACAAGATGCATAGTTTCTACTCTGTTTTGGCGACTATTTGTG
TATGTCTCTGGGTTCCTTTCACTTGCCGGGTGTTTTTGAGGTCGTGCCTG
CTGCATGTTAATACGTTATCTATCCTGCATTTGGTTGGTGTAGTGGGTGT
CCAGGCACACAGCAACTACAAGTCGAACGGAGTGACATAATTTCGGAACT
CTATCGGCCAAACTTACAGTCATGAGGTATGTATGCCGTACTTTTATGTA
CAACTGCTGTCATATGTGTTCCCTCCTCGTCCCTCTCGCAGTGGACGGCC
ACAAGGCTCTGCGAGAGGACAAGCTCGGCAAGTTCCCCACGACAGCGCTA
AAAACGAAGGAGTTCATGCGACTAACAGCACTGTCGGGCACGATATTCAC
AGGGTGAGCGAGTCGTCGCAGAGTTTGCAATCAATCTATTGCTGTTGAAA
ATCATTTAGAAGCCATGCAAACTGAATGTTGTGCCCACACTCGTGTACAT
GGTAAAACCTGTTCCGTCGTGGTTGCGGCTTGGCTCGAAATTCACCGAGT
TCGTCTCCCTCTTTAGGCGCACCGTACCGCACGTCAGCCATCCCACTGAC
GCTGCCGTAAAATTAATTGCTACGTGAGGTGCCTGAAGCCTTGACACACC
CGCGAGTGGTGAATTTTACGTTAACACAAGGCCGAATGCTACACCACTAC
CTGCCTGCCTGCCTGCCTAATCATGTTCCTGAATACTCCTGTGTGGAATG
GTTCGCTGCCTCTTTCGTGGGTCGTTTGATTCGCGCTTGTGCAGGTTTTT
CTGCGCGTTTCAGGGTATCAAGTACGGGGCAAAGCTTGCCCGAAATGAGG
ACGATTTCTTTAATGTCCTCATCGCTTCCGCCGGTGCCGTCGCTCCCTTG
GTGCCTTTTCCGGCAGCTCGGGCGCGATTTCCGTACGCCGTTATTCTTAT
AGCAATGGATACTCTAAACAACATGTTGTAGCACATGGCGCGGCGGGCAC
TCGATGGGGTTATTTGGGGGTCTACTGTGGTATTGCCGACAACGGTGGCT
GAACCTGGCGATAACATCATCGTGACGTTCCATGTGTTTTCTTCTACGGT
TACGATTCATAGAAGTGTGTTTTGATCGTCTGTGATGTTTGCTTTATAGT
TCCGTCAGTCTGGCGGTTCCGCGGTGGGGTATGTGTTTCCGCTACGATTT
ATAGCTGAATTGAATCGAATGATACGACGAGTTTTATGGTTTCTCTTCTC
CTCAAAGGAAAACGGAGTATTGGCACGCAAGTCACTTCGCTTCCATTGTT
TGTTGGGCCAAAAGTAGTTAATAGTTTGCGTTTTTGCGTCGGATCGGACA
TCTGGCCAAAATGTTGCTTGCCGTCTTGAGGTTGAATCGAGAGATTTTTT
CTGAACCTATTTTTGGTATGACTTTTGAGTTGTCCGTTCAGTGCAGTGGC
GGCACTGCACGTCAAACATATTGTAGTCCTGCCCTGCGTACCGCCATTGT
TACGCAATTTGTGTTTGCGCAGGTGCAAACGAGACCGATTTGCTTCCTGA
CCGCTCGAAAAATTGTTGCAAATTTCGGCCAAAACGTCTGACACAGTTGG
GGAGGGTTTTGGCCCCACTTCGTTCAATAAAAGCGGAGGGTTAACAAACA
TGTGCTGTTTCACTGAAATAATACGAAGGGACTGAACTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2687:13401..15391-

>mRNA_H-paniculata_contig2687.7349.1 ID=mRNA_H-paniculata_contig2687.7349.1|Name=mRNA_H-paniculata_contig2687.7349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig2687:13401..15391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGGAATCACGTTCGGAGCAAATGACTGGAATCACGTTCGGAGCAA
TGGACGGCCACAAGGCTCTGCGAGAGGACAAGCTCGGCAAGTTCCCCACG
ACAGCGCTAAAAACGAAGGAGTTCATGCGACTAACAGCACTGTCGGGCAC
GATATTCACAGGTGGACGGCCACAAGGCTCTGCGAGAGGACAAGCTCGGC
AAGTTCCCCACGACAGCGCTAAAAACGAAGGAGTTCATGCGACTAACAGC
ACTGTCGGGCACGATATTCACAGGGTTTTTCTGCGCGTTTCAGGGTATCA
AGTACGGGGCAAAGCTTGCCCGAAATGAGGACGATTTCTTTAATGTCCTC
ATCGCTTCCGCCGGTGCCGTCGCTCCCTTGGTGCCTTTTCCGGCAGCTCG
GGCGCGATTTCCGTACGCCGTTATTCTTATAGCAATGGATACTCTAAACA
ACATGTTGTAGGTTTTTCTGCGCGTTTCAGGGTATCAAGTACGGGGCAAA
GCTTGCCCGAAATGAGGACGATTTCTTTAATGTCCTCATCGCTTCCGCCG
GTGCCGTCGCTCCCTTGGTGCCTTTTCCGGCAGCTCGGGCGCGATTTCCG
TACGCCGTTATTCTTATAGCAATGGATACTCTAAACAACATGTTGTAG
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