mRNA_H-paniculata_contig2684.7340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2684.7340.1
Unique NamemRNA_H-paniculata_contig2684.7340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: L8H6Z9_ACACA (Uracil-DNA glycosylase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6Z9_ACACA)

HSP 1 Score: 63.2 bits (152), Expect = 5.230e-10
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   24 DGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADEDPR 173
            DG VC  H E     TVRKEG NQGRQFY C +S+E QC  F+W DE PR
Sbjct:  330 DGPVCS-HNEPSKVCTVRKEGPNQGRQFYACAQSRESQCKFFQWLDEPPR 378
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: K7GGM4_PELSI (DNA topoisomerase n=3 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7GGM4_PELSI)

HSP 1 Score: 62.4 bits (150), Expect = 9.940e-10
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G +C+ +Q     RTV+KEG N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  905 GGGAICKCNQPAIT-RTVQKEGPNKGRQFHTCPKPREQQCGFFQWADE 951
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: UPI0005218355 (endonuclease 8-like 3 n=1 Tax=Dryobates pubescens TaxID=118200 RepID=UPI0005218355)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:   36 CEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWAD 161
            C  H+  C+ R VRK G N+GRQFYTCP S+E QC  F+WAD
Sbjct:  442 CSKHKRLCSLRVVRKPGENKGRQFYTCPLSRETQCDYFQWAD 483
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A8C3JD21_9CHAR (DNA topoisomerase n=3 Tax=Calidris pygmaea TaxID=425635 RepID=A0A8C3JD21_9CHAR)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G VC+  Q     RTV+KEG N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  755 GGGMVCKCDQPAVT-RTVQKEGPNKGRQFHTCPKPREQQCGFFQWADE 801
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A8C3J858_9CHAR (DNA topoisomerase n=1 Tax=Calidris pygmaea TaxID=425635 RepID=A0A8C3J858_9CHAR)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G VC+  Q     RTV+KEG N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  903 GGGMVCKCDQPAVT-RTVQKEGPNKGRQFHTCPKPREQQCGFFQWADE 949
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A7L0NL26_9PASS (DNA topoisomerase (Fragment) n=5 Tax=Passeriformes TaxID=9126 RepID=A0A7L0NL26_9PASS)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    3 GGGXXXGDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G   G G VC   Q     RTV+K+G N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  896 GAGSEAGGGTVCRCDQPAVT-RTVQKDGPNKGRQFHTCPKPREQQCGFFQWADE 948
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A8C5PQK3_9ANUR (DNA topoisomerase n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PQK3_9ANUR)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:    3 GGGXXXGDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            GGG   G   +C  +Q T   RTV+K+GAN+GRQF+TC + +E+QCG F+WADE
Sbjct:  963 GGGGDNGQEAMCNCNQATIT-RTVQKDGANKGRQFHTCAKPREQQCGFFQWADE 1015
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A7S2S3I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3I4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.550e-9
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADEDPRRRGG 185
            G+   C  H+   A  TVRKEGANQGRQFY C   KE  C TF+WADE+P   GG
Sbjct:  100 GNDPTCPVHKGALAKLTVRKEGANQGRQFYKC---KEAGCNTFQWADEEPGGAGG 151
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BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: A0A7L2QJK2_9PASS (DNA topoisomerase (Fragment) n=1 Tax=Hypocryptadius cinnamomeus TaxID=589841 RepID=A0A7L2QJK2_9PASS)

HSP 1 Score: 60.8 bits (146), Expect = 3.450e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G VC   Q     RTV+K+G N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  686 GGGTVCRCEQPAVT-RTVQKDGPNKGRQFHTCPKPREQQCGFFQWADE 732
[Close]
BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Match: H0Z9W6_TAEGU (DNA topoisomerase n=56 Tax=Passeriformes TaxID=9126 RepID=H0Z9W6_TAEGU)

HSP 1 Score: 60.8 bits (146), Expect = 3.460e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:   21 GDGRVCEGHQETCAFRTVRKEGANQGRQFYTCPRSKEEQCGTFEWADE 164
            G G VC   Q     RTV+K+G N+GRQF+TCP+ +E+QCG F+WADE
Sbjct:  812 GGGTVCRCEQPAVT-RTVQKDGPNKGRQFHTCPKPREQQCGFFQWADE 858
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2684.7340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H6Z9_ACACA5.230e-1060.00Uracil-DNA glycosylase n=1 Tax=Acanthamoeba castel... [more]
K7GGM4_PELSI9.940e-1056.25DNA topoisomerase n=3 Tax=Pelodiscus sinensis TaxI... [more]
UPI00052183551.340e-959.52endonuclease 8-like 3 n=1 Tax=Dryobates pubescens ... [more]
A0A8C3JD21_9CHAR1.350e-958.33DNA topoisomerase n=3 Tax=Calidris pygmaea TaxID=4... [more]
A0A8C3J858_9CHAR1.360e-958.33DNA topoisomerase n=1 Tax=Calidris pygmaea TaxID=4... [more]
A0A7L0NL26_9PASS1.360e-953.70DNA topoisomerase (Fragment) n=5 Tax=Passeriformes... [more]
A0A8C5PQK3_9ANUR1.360e-953.70DNA topoisomerase n=2 Tax=Leptobrachium leishanens... [more]
A0A7S2S3I4_9STRA2.550e-956.36Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7L2QJK2_9PASS3.450e-956.25DNA topoisomerase (Fragment) n=1 Tax=Hypocryptadiu... [more]
H0Z9W6_TAEGU3.460e-956.25DNA topoisomerase n=56 Tax=Passeriformes TaxID=912... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2684contigH-paniculata_contig2684:4511..5979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2684.7340.1prot_H-paniculata_contig2684.7340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2684 4511..5955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.7167315-CDS-H-paniculata_contig2684:4510..46341622929805.7167315-CDS-H-paniculata_contig2684:4510..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2684 4511..4634 -
1691481018.9996426-CDS-H-paniculata_contig2684:4510..46341691481018.9996426-CDS-H-paniculata_contig2684:4510..4634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2684 4511..4634 -
1622929805.7317295-CDS-H-paniculata_contig2684:5896..59551622929805.7317295-CDS-H-paniculata_contig2684:5896..5955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2684 5897..5955 -
1691481019.0094523-CDS-H-paniculata_contig2684:5896..59551691481019.0094523-CDS-H-paniculata_contig2684:5896..5955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2684 5897..5955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.7459571-UTR-H-paniculata_contig2684:5955..59791622929805.7459571-UTR-H-paniculata_contig2684:5955..5979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2684 5956..5979 -
1691481019.0176337-UTR-H-paniculata_contig2684:5955..59791691481019.0176337-UTR-H-paniculata_contig2684:5955..5979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2684 5956..5979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2684.7340.1

>prot_H-paniculata_contig2684.7340.1 ID=prot_H-paniculata_contig2684.7340.1|Name=mRNA_H-paniculata_contig2684.7340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MGECVRVIKRRAPLEPCGKRVPTKDGSSTHVQGPKRSNVAPSSGRMKIHD
DEEGEGEVMAG
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mRNA from alignment at H-paniculata_contig2684:4511..5979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2684.7340.1 ID=mRNA_H-paniculata_contig2684.7340.1|Name=mRNA_H-paniculata_contig2684.7340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-paniculata_contig2684:4511..5979- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGGTGGTGGTGGAGGAGGAGATGGGCGAGTGTGTGAGGGTCATCAA
GAGACGTGCGCCTTTAGAACCGTGCGGAAAGAGGTGAAGAAATGATGCGC
GCCCGAGCGGTGATGCGACACGTTCTCAAGGGGATTAGGGACGGGGGGGG
GCAGGGTGAAACCTATTACTCACATACGCCTATGATTGAGGTGGGCACTT
GACACAACTACTCTCGTGCCTTGCGAGCCCTTTTTTTTCAGTCAAGCCAT
GTTTATACTCGTTGCGATGAGCAGTACACTATACTACTGTTGGTGCTCGC
GAATTGATGATGGATGTTATGCAGCCCATACAGCAGTCGATGCTGGGTAT
ACCGCACAGTAGAGTGCTCTGAGAACGCCCAGGGGGCGATCTTTTTTTAA
TGTGATTTTTACGTAATGGCTAATGACAGCGAAGCAAGCCCATTTGCGTT
CGAAAAAGCACGTCGATTGATAGATCTCCCCCGAGATCTATCTTTCCAAC
GACACAACTTTCGGTGTCATTAAATAGCACCGTAGTTTACGAGAAAGTCT
AGGGGGGGGATAGTTTGAAGGAAAATGCATTGGCTCTATTGCGGGGCCTA
TTATTCGGTCCTTCAACCGAGGTGTGAAACCTAGCGTACGGTGGAATGTT
TCACCGTCCTGACGAACCCGACAAAGAGTGTAGATGAATACTCAAACAAG
CTATTGTTCAGGTGTGTCATCTCCCATGATTAACCAACGGGGACATACTC
ATCGTGCCCTGCTCATGCGAACGTCTTTTTGAATGACTGAATCGGTGTAG
ACGACCGCACCGGCATTCTCTTGATTCCCAGAAAAATGTTCGCATAAGCA
GAACACGAAGAACATCCTCTCGGCCAGAATTTGTGCATGTACGAAGTCCC
CAGACTGACTGATAGGTTCATCCCTGCGTTTGTAAGCATTCATGGAAGTA
GAACGCTTTTGATACGCGATCGGTTTTTATCTCGAAAATTACTCTCTACA
GGTACGAATGTGCTGTTGGAAAGATCTTGCGGACATTTATCTGTTGATCG
ACTGGGTTCTTTCGACTCTGTGATGCCTCCATTTTCGAGATTGTCGCCGT
TAAGAAATGTGTGCACCCCAGTAGTGTGATACCTTCAGGTTTTTACGGTA
AGTATTTCCATGAACTATGATCGTAGGCTAATCTATCTCAGCTGACGCGT
GCACTACGGTAACGGTAGTATCGTTGATACAGATGTAACAGAAAACGGTT
TGACCGGCCAGTAAAATGTTCGCACGTACGACACGTATGTATTTGTGTGA
GGTGATACCCCCTCCTCTTCCCCCCTCCTGGGCTTCGCCGAACAGGGTGC
CAACCAAGGACGGCAGTTCTACACATGTCCAAGGTCCAAAGAGGAGCAAT
GTGGCACCTTCGAGTGGGCGGATGAAGATCCACGACGACGAGGAGGGGGA
GGGCGAGGTGATGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2684:4511..5979-

>mRNA_H-paniculata_contig2684.7340.1 ID=mRNA_H-paniculata_contig2684.7340.1|Name=mRNA_H-paniculata_contig2684.7340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig2684:4511..5979- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAGTGTGTGAGGGTCATCAAGAGACGTGCGCCTTTAGAACCGTG
CGGAAAGAGATGGGCGAGTGTGTGAGGGTCATCAAGAGACGTGCGCCTTT
AGAACCGTGCGGAAAGAGGGTGCCAACCAAGGACGGCAGTTCTACACATG
TCCAAGGTCCAAAGAGGAGCAATGTGGCACCTTCGAGTGGGCGGATGAAG
ATCCACGACGACGAGGAGGGGGAGGGCGAGGTGATGGCGGGAGGTGCCAA
CCAAGGACGGCAGTTCTACACATGTCCAAGGTCCAAAGAGGAGCAATGTG
GCACCTTCGAGTGGGCGGATGAAGATCCACGACGACGAGGAGGGGGAGGG
CGAGGTGATGGCGGGA
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