mRNA_H-paniculata_contig26831.7338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.360e-15 Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVVRNPARGKVQIKGLQ*PRVLHGLSRYPKQEGVRA 804
PK++ V +K K K+GK+DK+K RLVA+G +I + Y SP ++ASI++++ A K L H+DV QA A D+E ++ +P S + + +AI L Q+GR W D + FEQ +A C+FRK+VD VV +I + R ++GL + +Q G A
Sbjct: 117 PKERRPVSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLHHWDVKQAYTHATLDEEIFLRLPAGCGEKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIXXXSHKIAKAE--RAIYGLKQSGRQWGYHA 298
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5K4H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H8_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 5.400e-15 Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 3
Query: 951 GALMWTTTMTRPDTACAVRAVARFCSNPGPAHKKAINKIVRYLLHTMEWGIT*G-GQGCGLSMEVSTDSEFGDCLDFRRSVSGQVILLAKEAISWYSRMQEIQAPSVWFCSHSAAVSRMKQVRKMRLAWNY 1340
G+LMW T TRPDTA AVRAVAR+C++P H KA I+ Y+ T GIT G G+SM+V D+++ +RSVSG +++ ++W+SR Q+ S + A +K+V +R W +
Sbjct: 79 GSLMWLATQTRPDTANAVRAVARYCASPKMVHGKAALGILGYVRRTSWMGITFERGVVTGMSMQVVVDADYASKAADQRSVSGGLVMCVCGGVTWFSRTQKCVKLSSTEAEYVAIAGVLKEV--LRQVWRF 207
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.570e-14 Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
P+ + V +K K K+GK++K+K RLVA+GL +I + Y +SP + SI++++ A+ K L H+DV QA A D+E ++++P S + K +AI L +GR W D + FEQ +A C+FRK+VD VV
Sbjct: 410 PEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 560
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.260e-14 Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
P+ + V +K K KDGK++K+K RLVA+G +I + Y SP ++ASI++++ A K+ +L H+DV QA A D++ ++ +P S V K +AI L Q+GR W D + FEQ +A C+FRK+ D VV
Sbjct: 157 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVV 307
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.560e-14 Identity = 55/151 (36.42%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
P+ + V K K +GK+ K+K RLVA+G +I + Y SP ++ASI++++ A K L H+DV QA A D+E ++ +P S +GK +AI L Q+GR W D + FEQ +A C+FRK+VD VV
Sbjct: 201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 351
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.170e-13 Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 322 DGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
+GK+DK+K RLVA+G +I + Y SP ++ASI++++ A K L H+DV QA A D+E ++++P S + K +AI L Q+GR W D + FEQ +A C+FRK+VD VV
Sbjct: 95 EGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVV 226
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.190e-13 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query: 951 GALMWTTTMTRPDTACAVRAVARFCSNPGPAHKKAINKIVRYLLHTMEWGIT*G-GQGCGLSMEVSTDSEFGDCLDFRRSVSGQVILLAKEAISWYSRMQEIQAPSVWFCSHSAAVSRMKQVRKMRLAWNY 1340
G+L+W +TRPD A AVRAVAR+CS P H +A I+ Y + T +GI+ G G S+ D+++ RRSVSG V++ A AI+W+S+ Q+ S + A K++ +R W +
Sbjct: 168 GSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRF 298
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.670e-13 Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
P+ V +K KV K+G++DK+K RLVA+G +I + Y SP ++ASI++++ A K L H+DV QA+ A D+E ++++P S + K AI L Q+ R W D + FE+ +A RC+FRK+VD VV
Sbjct: 662 PEGHRPVSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVV 812
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.860e-13 Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 265 PKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGL-RIGGLHYTEKYSPTSATASIRMLMVTAAAKAGELRHFDVGQANLKAMSDDEEYIEIPEV--PFSGVVGKLNKAIQSLVQAGRCWNIKFCD-MTTTKFEQSRAHRCMFRKVVDGVV 705
P+ + V +K K KDGK++K+K RLVA+G +I + Y SP ++ASI++++ A K+ +L H+DV QA A D++ ++ +P S V K +AI L Q+GR W D + FEQ +A C+FRK+ D VV
Sbjct: 39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVV 189
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 2.490e-13 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query: 951 GALMWTTTMTRPDTACAVRAVARFCSNPGPAHKKAINKIVRYLLHTMEWGIT*G-GQGCGLSMEVSTDSEFGDCLDFRRSVSGQVILLAKEAISWYSRMQEIQAPSVWFCSHSAAVSRMKQVRKMRLAWNY 1340
G+L+W +TRPD A AVRAVAR+CS P H +A I+ Y + T +GI+ G G S+ D+++ RRSVSG V++ A AI+W+S+ Q+ S + A K++ +R W +
Sbjct: 472 GSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRF 602 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26831.7338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26831.7338.1 >prot_H-paniculata_contig26831.7338.1 ID=prot_H-paniculata_contig26831.7338.1|Name=mRNA_H-paniculata_contig26831.7338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp MARPKDKLVVRTKMLHKGKVRKDGKVDKYKCRLVAQGLRIGGLHYTEKYSback to top mRNA from alignment at H-paniculata_contig26831:1239..2657+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26831.7338.1 ID=mRNA_H-paniculata_contig26831.7338.1|Name=mRNA_H-paniculata_contig26831.7338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1419bp|location=Sequence derived from alignment at H-paniculata_contig26831:1239..2657+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26831:1239..2657+ >mRNA_H-paniculata_contig26831.7338.1 ID=mRNA_H-paniculata_contig26831.7338.1|Name=mRNA_H-paniculata_contig26831.7338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig26831:1239..2657+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |