mRNA_H-paniculata_contig2681.7334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2681.7334.1
Unique NamemRNA_H-paniculata_contig2681.7334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2681.7334.1 vs. uniprot
Match: D7FQ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ91_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.110e-52
Identity = 170/491 (34.62%), Postives = 234/491 (47.66%), Query Frame = 1 
Query:   16 RARPHPPA----ENGWSCAGGFSSDMFWPRLEDLNLVATGIRSAVLLDSRHAPRGSPPLANVLRALQDSRR--------CKARSTSNSDGCCIDDISSLGLLALDGSNFLVNRRLLRSRLAEVLAPCTPTTHTLSSTTKHSEGVDIANVMGSDGNHSGSWHSKTLPKAEKISSPAKDSGDGITVPTDRDFALVDVRDSVRVPRLCTELLAPRL-VAVLWSVFGNINAADASI-------GAIVNPPV--TQRQADAATSALPTNSSSQ-----GMSEGEDSR-ESGERWVLNWGRVELTLEVGDNLLMALGDVGMPGLAGWLLEYPVIYCCPSMIHGNDQVPPGTPTFSEGVPGNCLAMVQLSVYSVDMEFGNEIAPTSSN--------DCKV----FKAFSFSIPDRVCAGTDSDRS-------GAI---------TVPDYLLGLVDKFTSRMQGRIARCVSNSCCQCRQALPTGLNVRRRIEVLDRVAL 1320
            R RP   A    +  WS AGG  S  FWPR  D+ L A G+R AVLLDSR APR SPPLA+VL ALQ  ++        C  R   +   C    ++ LGLL L+GS+FLVNR +L  RL E+ +  T     +    + S     A         SG       P  +  +S  +   D       RD AL+DV  ++ VP   +++LAPRL  A+LW+  G   AA A+        G    PP   T R++ A  ++  +N   +     G+     S  E G RW+ +W   EL L+  ++L+  LGDVG+ G+AGWLLEYP IYCC S+  G      G     E   GNCLA V L+VYS+ ++ G++   +SS            V    F+AFSFS+P+ +C  T++++        GA               L GLVD F   +  R+AR   +        L   LNV +R   LD+VAL
Sbjct:   26 RVRPRAAAVDSNDGDWSVAGGSRSQTFWPRFGDICLAAAGVRCAVLLDSRRAPRRSPPLADVLLALQHDQQERQQQKEHCATRDCHSDCDCNSGGVACLGLLVLEGSSFLVNRVMLVRRLNELFSGETIAAEPVDERFRRS-----ATCATDCDKKSGYGTEAVRPAVDGAASAHQRHFDR------RDLALLDVNMALAVPSDRSDVLAPRLYAALLWAFGGATVAATANSVEEGRARGPSPTPPPRGTSRESTAMETSAKSNREDRFCGGDGVHRVPPSELEGGARWLRDWSMKELVLDC-ESLVKTLGDVGLSGMAGWLLEYPAIYCCSSLNDGTTNGSDGKEM--EHARGNCLAAVPLTVYSLAVDLGDKGRGSSSRPQPSLDERSASVTGAWFEAFSFSVPEAMCGPTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRRSGVNGNDSFL--SLNVSKRRATLDQVAL 500
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BLAST of mRNA_H-paniculata_contig2681.7334.1 vs. uniprot
Match: A0A6H5LL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL79_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.210e-51
Identity = 167/497 (33.60%), Postives = 228/497 (45.88%), Query Frame = 1 
Query:   13 SRARPHPPA----ENGWSCAGGFSSDMFWPRLEDLNLVATGIRSAVLLDSRHAPRGSPPLANVLRALQDSR--------RCKARSTSNSDGCCIDDISSLGLLALDGSNFLVNRRLLRSRLAEVLAPCTPTTHTLSSTTKHSEGVDIANVMGSDGNHSGSWHSKTLPKAEKISSPAKDSGDGITVPTDRDFALVDVRDSVRVPRLCTELLAPRLVAVLWSVFGNINAADASIGAIVN-------------PPVTQRQADAATSALPTNSSSQGMSEGEDS--------RESGERWVLNWGRVELTLEVGDNLLMALGDVGMPGLAGWLLEYPVIYCCPSMIHGNDQVPPGTPTFSEGVPGNCLAMVQLSVYSVDMEFGNEIAPTSSNDCKV------------FKAFSFSIPDRVCAGTDSDRS-------GAI---------TVPDYLLGLVDKFTSRMQGRIARCVSNSCCQCRQALPTGLNVRRRIEVLDRVAL 1320
            +R RP   A    +  WS AGG  S  FWPR  D+ LVA G+R AVLLDSR APRG PPLA+VL A+Q  +        RC  R   +   C    ++ LGLL L+GS+FLVNR +L  RL E+ +  T          + S     +      G  SG + ++ +  A  +++ A     G      RD  L+DV  ++ VP   +++LAPRL A L   FG      A++ A  N             PP      ++     P  S+ +    G D          E G RW+ +    EL L+  ++L+  LGDVG+ GLAGWLLEYPVIYCC S+  G      G     E   GNCLA V L+VYS  ++ G++    SS                 F AFSFS+P+ +C  T++++        GA               L GLVD F   +  R+AR   +        L   LNV +R   LD+VAL
Sbjct:   25 TRVRPRAAAVDSNDGDWSVAGGSRSQTFWPRFGDVCLVAAGVRCAVLLDSRRAPRGFPPLADVLLAMQHDQQERQQQKERCATRDCHSDCDCSSGGVACLGLLVLEGSSFLVNRVMLVHRLNELFSGETIAAQQADEMFRRS-----STCATGCGKKSG-YEAEAVRPAVDVAASAHQRRLGW-----RDSTLLDVNKALAVPSDRSDVLAPRLCAALLWAFGG-----ATVAATANSVEGGRASRPSPTPPPRGTSRESMAMETPAKSNKEDRFCGGDGVHRVLPSELEGGARWLRDLSMKELILDC-ESLVKTLGDVGLSGLAGWLLEYPVIYCCSSLNDGTSNGSDGKEM--EHARGNCLAAVPLTVYSFAVDLGDKGRGCSSRSQPSLDERSVSATGAWFDAFSFSVPETMCGPTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRGSGDNGNGSFL--SLNVFKRRATLDQVAL 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2681.7334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ91_ECTSI1.110e-5234.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LL79_9PHAE2.210e-5133.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2681contigH-paniculata_contig2681:17154..18852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007020.1
Exons2
Model size1325
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2681.7334.1prot_H-paniculata_contig2681.7334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2681 17156..18774 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.1179156-UTR-H-paniculata_contig2681:17153..171551622929805.1179156-UTR-H-paniculata_contig2681:17153..17155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2681 17154..17155 -
1691481018.7485056-UTR-H-paniculata_contig2681:17153..171551691481018.7485056-UTR-H-paniculata_contig2681:17153..17155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2681 17154..17155 -
1622929805.1559784-UTR-H-paniculata_contig2681:18774..188521622929805.1559784-UTR-H-paniculata_contig2681:18774..18852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2681 18775..18852 -
1691481018.7737238-UTR-H-paniculata_contig2681:18774..188521691481018.7737238-UTR-H-paniculata_contig2681:18774..18852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2681 18775..18852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.129181-CDS-H-paniculata_contig2681:17155..183861622929805.129181-CDS-H-paniculata_contig2681:17155..18386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2681 17156..18386 -
1691481018.7572908-CDS-H-paniculata_contig2681:17155..183861691481018.7572908-CDS-H-paniculata_contig2681:17155..18386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2681 17156..18386 -
1622929805.1435664-CDS-H-paniculata_contig2681:18760..187741622929805.1435664-CDS-H-paniculata_contig2681:18760..18774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2681 18761..18774 -
1691481018.7651572-CDS-H-paniculata_contig2681:18760..187741691481018.7651572-CDS-H-paniculata_contig2681:18760..18774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2681 18761..18774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2681.7334.1

>prot_H-paniculata_contig2681.7334.1 ID=prot_H-paniculata_contig2681.7334.1|Name=mRNA_H-paniculata_contig2681.7334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MFWPRLEDLNLVATGIRSAVLLDSRHAPRGSPPLANVLRALQDSRRCKAR
STSNSDGCCIDDISSLGLLALDGSNFLVNRRLLRSRLAEVLAPCTPTTHT
LSSTTKHSEGVDIANVMGSDGNHSGSWHSKTLPKAEKISSPAKDSGDGIT
VPTDRDFALVDVRDSVRVPRLCTELLAPRLVAVLWSVFGNINAADASIGA
IVNPPVTQRQADAATSALPTNSSSQGMSEGEDSRESGERWVLNWGRVELT
LEVGDNLLMALGDVGMPGLAGWLLEYPVIYCCPSMIHGNDQVPPGTPTFS
EGVPGNCLAMVQLSVYSVDMEFGNEIAPTSSNDCKVFKAFSFSIPDRVCA
GTDSDRSGAITVPDYLLGLVDKFTSRMQGRIARCVSNSCCQCRQALPTGL
NVRRRIEVLDRVAL*
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mRNA from alignment at H-paniculata_contig2681:17154..18852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2681.7334.1 ID=mRNA_H-paniculata_contig2681.7334.1|Name=mRNA_H-paniculata_contig2681.7334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-paniculata_contig2681:17154..18852- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGTCAACCTTCCAGAGCACGTCCACATCCTCCAGCTGAGAATGGGTG
GAGCTGTGCTGGGGGCTTTAGTTCGGACATGTTTTGGCCAAGGTTAGTAC
TCGTGTTGCTTGCTTTGGACAGCCAGCTACGGTGTGTGGTCTGTCCCCGT
CGGTCGCGACCTCACTCCTTCGACCGCGACTGAAAGAATAAAAAATAACA
GTCCGCAACGGAGGCCAAAATTTTGGGGGACGGCATGCTCAGCCCATAGT
CTTTTTGTCAAGGTTGTGAAATTGACAGAGCTGCAACGCACTGGTTTCAG
CGGTGGCAGTTGGAAATTTCGACAGTCTAGACGAAGTGTAGTTGTTGTCT
AGAGCGATGCCGAATACCACAGAAAAAATATATGTACATGTCCTTGCATT
GGATGTACAATTCGCGTTTTCAGCAACAGGGTGTTCCCTACTGGTCTTTG
CGCGGGACATTGGCAGGCTTGAGGATCTGAACCTTGTAGCTACAGGGATT
CGCTCAGCCGTTCTACTAGATTCGCGTCACGCCCCCCGTGGGTCCCCGCC
GTTGGCAAATGTCCTGCGGGCTCTTCAAGACAGCCGAAGGTGCAAGGCTA
GATCTACCAGCAACAGTGATGGTTGCTGTATCGACGACATCTCTTCCCTC
GGACTACTGGCGTTGGACGGTTCTAACTTCCTGGTGAATCGCCGTCTACT
GCGATCGCGACTCGCTGAGGTTCTAGCTCCTTGCACTCCTACAACACATA
CCCTCTCTTCGACGACCAAACATTCAGAAGGGGTCGATATCGCCAACGTC
ATGGGCAGTGATGGTAACCATTCAGGAAGTTGGCACAGTAAAACCTTGCC
AAAGGCAGAGAAGATATCTTCCCCAGCAAAAGACTCAGGGGACGGCATCA
CCGTTCCGACAGACAGAGACTTCGCGTTGGTTGATGTTCGAGATTCTGTC
CGCGTGCCAAGACTGTGCACGGAACTCCTTGCCCCACGATTGGTGGCAGT
GCTATGGTCGGTGTTCGGGAACATTAACGCTGCTGATGCCTCTATTGGGG
CTATCGTGAATCCGCCTGTTACCCAGCGTCAAGCAGATGCTGCTACTTCC
GCGCTCCCGACGAATAGCAGCTCGCAGGGGATGTCAGAGGGTGAAGATTC
ACGTGAGTCGGGAGAGCGGTGGGTCCTAAACTGGGGGAGAGTGGAACTAA
CACTTGAGGTCGGGGACAATCTGCTCATGGCGTTGGGCGATGTTGGCATG
CCGGGGTTGGCTGGATGGCTTTTGGAGTATCCCGTTATCTACTGCTGTCC
CTCAATGATCCATGGTAACGACCAAGTTCCACCTGGCACACCTACTTTCT
CTGAAGGAGTTCCAGGCAATTGCCTGGCGATGGTTCAGCTTTCCGTGTAC
TCTGTGGACATGGAATTTGGAAATGAAATCGCCCCAACTTCGTCCAACGA
CTGTAAAGTGTTTAAAGCGTTTAGTTTCAGTATTCCGGATAGGGTTTGTG
CCGGAACTGATAGTGATAGAAGTGGTGCAATTACTGTTCCTGATTACCTT
TTGGGTTTGGTGGATAAATTTACGTCGAGAATGCAGGGTAGGATAGCTAG
ATGCGTCTCCAACAGCTGTTGTCAATGCCGACAAGCGTTGCCAACTGGAC
TTAATGTTAGAAGGCGGATAGAGGTCCTCGATCGCGTCGCGCTGTAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2681:17154..18852-

>mRNA_H-paniculata_contig2681.7334.1 ID=mRNA_H-paniculata_contig2681.7334.1|Name=mRNA_H-paniculata_contig2681.7334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig2681:17154..18852- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTGGCCAAGATGTTTTGGCCAAGGCTTGAGGATCTGAACCTTGTA
GCTACAGGGATTCGCTCAGCCGTTCTACTAGATTCGCGTCACGCCCCCCG
TGGGTCCCCGCCGTTGGCAAATGTCCTGCGGGCTCTTCAAGACAGCCGAA
GGTGCAAGGCTAGATCTACCAGCAACAGTGATGGTTGCTGTATCGACGAC
ATCTCTTCCCTCGGACTACTGGCGTTGGACGGTTCTAACTTCCTGGTGAA
TCGCCGTCTACTGCGATCGCGACTCGCTGAGGTTCTAGCTCCTTGCACTC
CTACAACACATACCCTCTCTTCGACGACCAAACATTCAGAAGGGGTCGAT
ATCGCCAACGTCATGGGCAGTGATGGTAACCATTCAGGAAGTTGGCACAG
TAAAACCTTGCCAAAGGCAGAGAAGATATCTTCCCCAGCAAAAGACTCAG
GGGACGGCATCACCGTTCCGACAGACAGAGACTTCGCGTTGGTTGATGTT
CGAGATTCTGTCCGCGTGCCAAGACTGTGCACGGAACTCCTTGCCCCACG
ATTGGTGGCAGTGCTATGGTCGGTGTTCGGGAACATTAACGCTGCTGATG
CCTCTATTGGGGCTATCGTGAATCCGCCTGTTACCCAGCGTCAAGCAGAT
GCTGCTACTTCCGCGCTCCCGACGAATAGCAGCTCGCAGGGGATGTCAGA
GGGTGAAGATTCACGTGAGTCGGGAGAGCGGTGGGTCCTAAACTGGGGGA
GAGTGGAACTAACACTTGAGGTCGGGGACAATCTGCTCATGGCGTTGGGC
GATGTTGGCATGCCGGGGTTGGCTGGATGGCTTTTGGAGTATCCCGTTAT
CTACTGCTGTCCCTCAATGATCCATGGTAACGACCAAGTTCCACCTGGCA
CACCTACTTTCTCTGAAGGAGTTCCAGGCAATTGCCTGGCGATGGTTCAG
CTTTCCGTGTACTCTGTGGACATGGAATTTGGAAATGAAATCGCCCCAAC
TTCGTCCAACGACTGTAAAGTGTTTAAAGCGTTTAGTTTCAGTATTCCGG
ATAGGGTTTGTGCCGGAACTGATAGTGATAGAAGTGGTGCAATTACTGTT
CCTGATTACCTTTTGGGTTTGGTGGATAAATTTACGTCGAGAATGCAGGG
TAGGATAGCTAGATGCGTCTCCAACAGCTGTTGTCAATGCCGACAAGCGT
TGCCAACTGGACTTAATGTTAGAAGGCGGATAGAGGTCCTCGATCGCGTC
GCGCTGTAAGCTTGAGGATCTGAACCTTGTAGCTACAGGGATTCGCTCAG
CCGTTCTACTAGATTCGCGTCACGCCCCCCGTGGGTCCCCGCCGTTGGCA
AATGTCCTGCGGGCTCTTCAAGACAGCCGAAGGTGCAAGGCTAGATCTAC
CAGCAACAGTGATGGTTGCTGTATCGACGACATCTCTTCCCTCGGACTAC
TGGCGTTGGACGGTTCTAACTTCCTGGTGAATCGCCGTCTACTGCGATCG
CGACTCGCTGAGGTTCTAGCTCCTTGCACTCCTACAACACATACCCTCTC
TTCGACGACCAAACATTCAGAAGGGGTCGATATCGCCAACGTCATGGGCA
GTGATGGTAACCATTCAGGAAGTTGGCACAGTAAAACCTTGCCAAAGGCA
GAGAAGATATCTTCCCCAGCAAAAGACTCAGGGGACGGCATCACCGTTCC
GACAGACAGAGACTTCGCGTTGGTTGATGTTCGAGATTCTGTCCGCGTGC
CAAGACTGTGCACGGAACTCCTTGCCCCACGATTGGTGGCAGTGCTATGG
TCGGTGTTCGGGAACATTAACGCTGCTGATGCCTCTATTGGGGCTATCGT
GAATCCGCCTGTTACCCAGCGTCAAGCAGATGCTGCTACTTCCGCGCTCC
CGACGAATAGCAGCTCGCAGGGGATGTCAGAGGGTGAAGATTCACGTGAG
TCGGGAGAGCGGTGGGTCCTAAACTGGGGGAGAGTGGAACTAACACTTGA
GGTCGGGGACAATCTGCTCATGGCGTTGGGCGATGTTGGCATGCCGGGGT
TGGCTGGATGGCTTTTGGAGTATCCCGTTATCTACTGCTGTCCCTCAATG
ATCCATGGTAACGACCAAGTTCCACCTGGCACACCTACTTTCTCTGAAGG
AGTTCCAGGCAATTGCCTGGCGATGGTTCAGCTTTCCGTGTACTCTGTGG
ACATGGAATTTGGAAATGAAATCGCCCCAACTTCGTCCAACGACTGTAAA
GTGTTTAAAGCGTTTAGTTTCAGTATTCCGGATAGGGTTTGTGCCGGAAC
TGATAGTGATAGAAGTGGTGCAATTACTGTTCCTGATTACCTTTTGGGTT
TGGTGGATAAATTTACGTCGAGAATGCAGGGTAGGATAGCTAGATGCGTC
TCCAACAGCTGTTGTCAATGCCGACAAGCGTTGCCAACTGGACTTAATGT
TAGAAGGCGGATAGAGGTCCTCGATCGCGTCGCGCTGTAA
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