mRNA_H-paniculata_contig26799.7327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26799.7327.1
Unique NamemRNA_H-paniculata_contig26799.7327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.160e-52
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 QHSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGR 300
            +HS V QSRDASFHPGC DKRNIRVNGDGFG+AWY P  IE+G C+VKF TPAW ++NLLNIAKF+ESGLVFAHVRAASDG VL GNVNHENTHPFK  R
Sbjct:    9 EHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFKYKR 108
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 5.450e-51
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 QHSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGR 300
            +HS V QSRDASFHPGC DKRNIRVNGDGFG+AWY P  IE+G C+VKF TPAW ++NLLNIAKF+ESGLVFAHVRAASDG VL GNVNHENTHPFK  R
Sbjct:   15 EHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFKYKR 114
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A482RVP5_9ARCH (Class II glutamine amidotransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVP5_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 4.410e-28
Identity = 55/106 (51.89%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDK---RNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGN---VNHENTHPFKVGRL 303
            +S + QSRDA++HPG  DK   RNI VNGDGFGV WY  N +  G C  KF TPAW + NL +I + + S LV AH+RAAS G         V+HEN HPF+ GR 
Sbjct:   23 NSLIYQSRDAAYHPGVTDKTHRRNILVNGDGFGVCWYGEN-VSKGGCCFKFVTPAWSNGNLRSIGEHVASHLVCAHIRAASSGHDPLHERVAVSHENCHPFRYGRF 127
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: F0Y652_AURAN (Glutamine amidotransferase type-2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y652_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 2.860e-22
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSS----NLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGRLI 306
            HS V QS    FHP C DK N+R+N DGFG+ WY        + + +  TPAW  +    NL  +A  + S   FAHVRAA+ G+V    V+ ENTHPF+ GRL+
Sbjct:   24 HSIVRQSFSGGFHPDCSDKNNMRMNADGFGLGWYGLRESGASAAIFRSITPAWSCAWSNRNLRELAGVVSSRCCFAHVRAATPGSV----VSEENTHPFRYGRLL 124
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A7S0DVN1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVN1_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 8.470e-21
Identity = 50/104 (48.08%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 QHSFVLQSRDASFHPGCP-------DKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFK 291
            ++S + QSRDA F PG         DKRN RVN DGFGVAWY        +CL K   P+W  SNLL +A  +ES  +FAHVRAAS G         +N HPFK
Sbjct:   20 ENSIINQSRDAQFLPGLTYENQAITDKRNNRVNADGFGVAWYTKG--RKNACLYKSTQPSWGDSNLLELADHVESPTIFAHVRAASMGVASV-----QNCHPFK 116
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A1Y2GI97_9FUNG (Nucleophile aminohydrolase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GI97_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.110e-17
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGS---CLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGRLI 306
            HS + QS D+   P   D R + +NGDGFGV WY+P    DGS   C+    TPAW + NL+ +A  I+S LVFAHVRAA+      G+V+  N HP++ GRL+
Sbjct:   21 HSIINQSFDSK-RP--VDGRRL-INGDGFGVGWYEPESSIDGSAAPCIFTSVTPAWNNMNLIRLANKIKSPLVFAHVRAAA-----AGSVSESNCHPWQYGRLM 115
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A8H7Q5P5_MORIS (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q5P5_MORIS)

HSP 1 Score: 83.6 bits (205), Expect = 1.290e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGS---CLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGRLI 306
            HS + QS D+       D+R   +NGDGFGV WY+P+   + +   C+    TPAW ++NL+ +A+ I+S LVFAHVRA++ GTV        N HPF+ GRL+
Sbjct:   24 HSIINQSFDSRLRI---DRRRP-INGDGFGVGWYEPDTESETANTPCIFTSVTPAWNNNNLIRLAEKIKSPLVFAHVRASTAGTV-----TETNCHPFQFGRLM 118
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A8H7PQE4_9FUNG (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PQE4_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 1.360e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGS---CLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGRLI 306
            HS + QS D+       D+R   +NGDGFGV WY+P+   + +   C+    TPAW ++NL+ +A+ I+S LVFAHVRA++ GTV        N HPF+ GRL+
Sbjct:   44 HSIINQSFDSRLRI---DRRRP-INGDGFGVGWYEPDADSETANTPCIFTSVTPAWNNNNLIRLAEKIKSPLVFAHVRASTAGTV-----TETNCHPFQYGRLM 138
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: UPI001643DCB6 (class II glutamine amidotransferase n=1 Tax=unclassified Stappia TaxID=2629676 RepID=UPI001643DCB6)

HSP 1 Score: 80.9 bits (198), Expect = 3.620e-16
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 QHSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGR 300
            +HS ++QS+DA        +  +RVNGDGFG+AWY  ++ E G  L K   PAW  +NL +I + + SGL  AHVRAA+     TG  + EN HPF  GR
Sbjct:   22 RHSLLVQSQDAQ-------EAKLRVNGDGFGIAWYG-HLPEPG--LFKDVLPAWADTNLPSICRLVRSGLFLAHVRAAT-----TGASSRENCHPFTHGR 106
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BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Match: A0A397T4F1_9GLOM (Nucleophile aminohydrolase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T4F1_9GLOM)

HSP 1 Score: 80.9 bits (198), Expect = 5.710e-16
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    4 HSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGS-CLVKFATPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGRLI 306
            HS + QS D+       DKR   +NGDGFGV WY+ N   D + C+    TPAW ++NL  +A+ I+S LVFAHVRA++ GT+     +  N HP+K  +L+
Sbjct:   24 HSIINQSFDSRLRL---DKRRP-INGDGFGVGWYESNSGPDNTPCIFASVTPAWNNNNLARLAEKIKSPLVFAHVRASTSGTL-----SETNCHPWKYNKLM 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26799.7327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXW2_9PHAE2.160e-5280.00Glutamine amidotransferase type-2 domain-containin... [more]
D8LKF2_ECTSI5.450e-5180.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RVP5_9ARCH4.410e-2851.89Class II glutamine amidotransferase (Fragment) n=1... [more]
F0Y652_AURAN2.860e-2244.76Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S0DVN1_9EUKA8.470e-2148.08Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A1Y2GI97_9FUNG1.110e-1746.15Nucleophile aminohydrolase n=1 Tax=Lobosporangium ... [more]
A0A8H7Q5P5_MORIS1.290e-1643.27Glutamine amidotransferase type-2 domain-containin... [more]
A0A8H7PQE4_9FUNG1.360e-1643.27Glutamine amidotransferase type-2 domain-containin... [more]
UPI001643DCB63.620e-1645.00class II glutamine amidotransferase n=1 Tax=unclas... [more]
A0A397T4F1_9GLOM5.710e-1643.14Nucleophile aminohydrolase n=1 Tax=Glomus cerebrif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26799contigH-paniculata_contig26799:1491..2821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue1.7e-43
Seed eggNOG ortholog2880.D8LKF2
Preferred nameDUG3
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC5.4.2.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.097924-CDS-H-paniculata_contig26799:1490..17071622929804.097924-CDS-H-paniculata_contig26799:1490..1707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26799 1491..1707 -
1691481018.2526443-CDS-H-paniculata_contig26799:1490..17071691481018.2526443-CDS-H-paniculata_contig26799:1490..1707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26799 1491..1707 -
1622929804.1128547-CDS-H-paniculata_contig26799:2720..28211622929804.1128547-CDS-H-paniculata_contig26799:2720..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26799 2721..2821 -
1691481018.2692215-CDS-H-paniculata_contig26799:2720..28211691481018.2692215-CDS-H-paniculata_contig26799:2720..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26799 2721..2821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26799.7327.1prot_H-paniculata_contig26799.7327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26799 1491..2821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26799.7327.1

>prot_H-paniculata_contig26799.7327.1 ID=prot_H-paniculata_contig26799.7327.1|Name=mRNA_H-paniculata_contig26799.7327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
QHSFVLQSRDASFHPGCPDKRNIRVNGDGFGVAWYQPNMIEDGSCLVKFA
TPAWCSSNLLNIAKFIESGLVFAHVRAASDGTVLTGNVNHENTHPFKVGR
LIDEG*
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mRNA from alignment at H-paniculata_contig26799:1491..2821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26799.7327.1 ID=mRNA_H-paniculata_contig26799.7327.1|Name=mRNA_H-paniculata_contig26799.7327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1331bp|location=Sequence derived from alignment at H-paniculata_contig26799:1491..2821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCACTCCTTTGTTTTGCAATCAAGAGACGCCTCTTTCCACCCCGGTTG
CCCCGACAAGCGAAACATTCGTGTCAATGGAGATGGGTTCGGAGTTGCCT
GGTAAGCTTCTTTGCGATGTACGCAGTGTGCGGTGGAGTATATGTAGGAC
TACCTACAAGATTTTTGTAAATTCTGTTCCGCAAACATTCTAATGTCGAG
CGTTTCTTTTTCTAGTTTCCGTACGTGGCTGCTTCGATATATGGTGTGTC
AACGCCGCAGAACGCAATCAGCTGGCTGGGTCCACCTCGTTGTACGACAC
GAGATTGGCAAGATGGGCACTTTCCTTCTGCAGCCCACAAAACCCATTGA
CCATGACCTCTTGGTAATGATCCGCAAAGTCGACGAGCGCATCTTGAACG
GGTGTCACACATAAGCCACTTTTTGGTCCCGCACATGCAGAATCTAGTAG
GTGTGCGAGAGATGCTGGACACAGTACCTCGACCAATAACATACCACTCG
TGTGGAGTCCGAGCTGAAATTTGTCCGTTCGTTTTGCCGTTGATATCTTT
CAAATCTCGCGGCCACTATATTTCGTTCCTCCTGATTTTTCTGCTTATGC
TTCACGTCGTTGGCGTACGGTTTGGATTATTTTTGATGCATCAAGGGTTT
TGCATTTGGTTCTCGTCAGTGGACTACGTTCTTGAATACTAGTGTGAAGT
GTGACAGCGTTGCTCTGGGAACATTCGCTCCTTCTTTCTCCGAGGGTTTG
TTGGCGATGATGGTCGAGTCACAGTAGTGTTCCAATAGTTTATAGTTTTA
TCCCAATAACCTCCCGACGTAAATCTTGGCCTATATTGGATGTGACGATA
CCGTTAGGTGACTGTTTCTCTTTATATGCGAAATAACCGTTTCCCCTCTC
GTTGAATTTGTCAGCGTTGCTCACACAAACAAGGCTATATGTCCATCTAT
TTATCTGACTGTTGGTCTGTTTGTTGGTCTCTTTGTCGGTCTCTTTGTCT
GACTGTCTGTCTGACTGACTGGCTTTATGCCTGCCTGTATTTCCATTTAT
TTCCCTGTCTCTCCCCCCTCTCCCCCTCCCACCCCTCGCCACCACCGGAA
CTAAATTTATCGAGGTACCAACCCAATATGATAGAGGATGGGAGCTGTCT
AGTGAAGTTTGCGACGCCGGCCTGGTGCAGCTCCAACCTACTCAACATCG
CCAAATTTATCGAGTCTGGGCTGGTCTTCGCGCACGTGCGGGCCGCCTCA
GACGGCACGGTGTTGACGGGCAACGTGAACCATGAGAATACCCATCCCTT
CAAGGTCGGTCGGTTGATTGATGAGGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26799:1491..2821-

>mRNA_H-paniculata_contig26799.7327.1 ID=mRNA_H-paniculata_contig26799.7327.1|Name=mRNA_H-paniculata_contig26799.7327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig26799:1491..2821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCACTCCTTTGTTTTGCAATCAAGAGACGCCTCTTTCCACCCCGGTTG
CCCCGACAAGCGAAACATTCGTGTCAATGGAGATGGGTTCGGAGTTGCCT
GCAGCACTCCTTTGTTTTGCAATCAAGAGACGCCTCTTTCCACCCCGGTT
GCCCCGACAAGCGAAACATTCGTGTCAATGGAGATGGGTTCGGAGTTGCC
TGGTACCAACCCAATATGATAGAGGATGGGAGCTGTCTAGTGAAGTTTGC
GACGCCGGCCTGGTGCAGCTCCAACCTACTCAACATCGCCAAATTTATCG
AGTCTGGGCTGGTCTTCGCGCACGTGCGGGCCGCCTCAGACGGCACGGTG
TTGACGGGCAACGTGAACCATGAGAATACCCATCCCTTCAAGGTCGGTCG
GTTGATTGATGAGGGATAAGTACCAACCCAATATGATAGAGGATGGGAGC
TGTCTAGTGAAGTTTGCGACGCCGGCCTGGTGCAGCTCCAACCTACTCAA
CATCGCCAAATTTATCGAGTCTGGGCTGGTCTTCGCGCACGTGCGGGCCG
CCTCAGACGGCACGGTGTTGACGGGCAACGTGAACCATGAGAATACCCAT
CCCTTCAAGGTCGGTCGGTTGATTGATGAGGGATAA
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