mRNA_H-paniculata_contig26715.7306.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26715.7306.1
Unique NamemRNA_H-paniculata_contig26715.7306.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A6H5JGA1_9PHAE (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGA1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.380e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW 147
            QVAGYHTRF+ A+L+FVTVH AGHEVPAYQPARA  LL++YLD +W
Sbjct:  453 QVAGYHTRFQGAKLSFVTVHYAGHEVPAYQPARALMLLRRYLDGSW 498
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A835YW61_9STRA (Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW61_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.890e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW 147
            QVAGY T F++  LAFVTVHSAGHEVPAYQPARA  LLQ+YLD TW
Sbjct:  437 QVAGYATLFDSG-LAFVTVHSAGHEVPAYQPARALALLQRYLDGTW 481
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A836CD18_9STRA (Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD18_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.510e-13
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW 147
            Q AGY T+F    LAFVTVHSAGHEVPAYQP RA  +LQ+YLD +W
Sbjct:  460 QPAGYATKFSGGALAFVTVHSAGHEVPAYQPERALVVLQRYLDGSW 505
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A835YVV9_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.650e-13
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW 147
            Q AGY T+F+   LAFVTVHSAGHEVPAYQP RA  +L++YLD +W
Sbjct:  219 QPAGYVTKFKGGALAFVTVHSAGHEVPAYQPERALVVLERYLDGSW 264
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A836CDJ2_9STRA (Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.130e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW 147
            Q AGY T+F    LAFVTVHSAGHEVPAYQP RA  +L++YLD +W
Sbjct:  395 QPAGYATKFSGGALAFVTVHSAGHEVPAYQPERALVVLERYLDGSW 440
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A482RZ03_9ARCH (S10 family peptidase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ03_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-7
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYL 135
            Q AGY T++ N +LAF+TVH AGHEVPAY+P  A  L ++YL
Sbjct:  360 QTAGYLTKWTNTKLAFLTVHGAGHEVPAYKPDVALDLFKRYL 401
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A7S2XY19_9STRA (Carboxypeptidase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY19_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.040e-6
Identity = 27/43 (62.79%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLD 138
            Q AGY   FE   L  VTVHSAGHEVPAYQP RA  + Q YL+
Sbjct:  592 QGAGYELIFEGG-LKLVTVHSAGHEVPAYQPQRALAVFQAYLN 633
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: UPI000CE22E64 (serine carboxypeptidase-like 40 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE22E64)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 TLHQVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLD 138
            T  QV GY T+     L F TV  AGHEVP+YQPARAF+L++ +L+
Sbjct:  405 TKDQVGGY-TQVYEGDLTFATVREAGHEVPSYQPARAFSLIKHFLE 449
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A6P4BBE8_ARADU (Carboxypeptidase n=4 Tax=Arachis TaxID=3817 RepID=A0A6P4BBE8_ARADU)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   16 AGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRT 144
            AG +T      L F TV  AGH+VP+YQPARAF+LL+ +LD T
Sbjct:  455 AGGYTEVYKGGLTFATVRGAGHQVPSYQPARAFSLLKHFLDGT 497
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BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Match: A0A2I4GKP5_JUGRE (Carboxypeptidase n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GKP5_JUGRE)

HSP 1 Score: 51.2 bits (121), Expect = 3.810e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   10 QVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRT 144
            +V GY T      L F TV  AGH+VP+YQPARAF+L++ +LD T
Sbjct:  449 EVGGY-TEVYKGDLTFATVRGAGHQVPSYQPARAFSLIKHFLDGT 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26715.7306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JGA1_9PHAE6.380e-1676.09Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A835YW61_9STRA6.890e-1478.26Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A836CD18_9STRA4.510e-1369.57Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A835YVV9_9STRA5.650e-1367.39Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A836CDJ2_9STRA1.130e-1267.39Carboxypeptidase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A482RZ03_9ARCH1.210e-759.52S10 family peptidase n=1 Tax=archaeon TaxID=190666... [more]
A0A7S2XY19_9STRA2.040e-662.79Carboxypeptidase n=2 Tax=Fibrocapsa japonica TaxID... [more]
UPI000CE22E642.790e-654.35serine carboxypeptidase-like 40 n=1 Tax=Quercus su... [more]
A0A6P4BBE8_ARADU2.790e-655.81Carboxypeptidase n=4 Tax=Arachis TaxID=3817 RepID=... [more]
A0A2I4GKP5_JUGRE3.810e-653.33Carboxypeptidase n=3 Tax=Juglandaceae TaxID=16714 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26715contigH-paniculata_contig26715:470..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7FGS2
KEGG rclassRC00597,RC00598,RC00784,RC02852
KEGG koko:K08249,ko:K13289,ko:K16296,ko:K16297
KEGG ReactionR01409,R02676,R02811
KEGG Pathwayko00460,ko01110,ko04142,ko04614,map00460,map01110,map04142,map04614
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005911,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0009056,GO:0009057,GO:0009505,GO:0009506,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009987,GO:0010033,GO:0014070,GO:0016787,GO:0017171,GO:0019538,GO:0023052,GO:0030054,GO:0030163,GO:0030312,GO:0032870,GO:0033993,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070008,GO:0070011,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5,4.1.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.178657-CDS-H-paniculata_contig26715:469..6161622929802.178657-CDS-H-paniculata_contig26715:469..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26715 470..616 +
1691481017.2685974-CDS-H-paniculata_contig26715:469..6161691481017.2685974-CDS-H-paniculata_contig26715:469..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26715 470..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26715.7306.1prot_H-paniculata_contig26715.7306.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26715 470..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26715.7306.1

>prot_H-paniculata_contig26715.7306.1 ID=prot_H-paniculata_contig26715.7306.1|Name=mRNA_H-paniculata_contig26715.7306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
TLHQVAGYHTRFENAQLAFVTVHSAGHEVPAYQPARAFTLLQKYLDRTW
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mRNA from alignment at H-paniculata_contig26715:470..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26715.7306.1 ID=mRNA_H-paniculata_contig26715.7306.1|Name=mRNA_H-paniculata_contig26715.7306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig26715:470..616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTTACACCAGGTTGCAGGATACCACACAAGATTCGAAAATGCGCAACT
TGCTTTCGTCACCGTGCACTCTGCTGGACATGAGGTGCCGGCCTATCAAC
CAGCTCGCGCATTCACGCTCTTGCAGAAGTACCTCGACCGCACGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26715:470..616+

>mRNA_H-paniculata_contig26715.7306.1 ID=mRNA_H-paniculata_contig26715.7306.1|Name=mRNA_H-paniculata_contig26715.7306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig26715:470..616+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTTACACCAGGTTGCAGGATACCACACAAGATTCGAAAATGCGCAACT
TGCTTTCGTCACCGTGCACTCTGCTGGACATGAGGTGCCGGCCTATCAAC
CAGCTCGCGCATTCACGCTCTTGCAGAAGTACCTCGACCGCACGTGGACG
TTACACCAGGTTGCAGGATACCACACAAGATTCGAAAATGCGCAACTTGC
TTTCGTCACCGTGCACTCTGCTGGACATGAGGTGCCGGCCTATCAACCAG
CTCGCGCATTCACGCTCTTGCAGAAGTACCTCGACCGCACGTGG
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