mRNA_H-paniculata_contig2670.7300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: D7FQ65_ECTSI (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ65_ECTSI) HSP 1 Score: 292 bits (748), Expect = 2.940e-89 Identity = 159/239 (66.53%), Postives = 180/239 (75.31%), Query Frame = 1
Query: 1708 MAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQD-LGSAQCELCTRLIKQVLPKHTLEAVLCGLCG---------------GPTMPDAGGGGRSVDPGARE----GGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRLD 2364
MA+C+GFVT ALSLRNCLAF AVLVPRAR+L+ PASRLLVTAVSGIGKARPG IDGL+LPLLC DP +GSAQCELCTRLIKQ+LPK TLEAVL GLCG GP+ +GG G + G R CVWTELT+P++T ALNLKP LSD+AI LVR VEAA+E+ LQKSLKFTTL+HSLVTRYGPQ KPHV +R ++GRCSTFMVK VL ALQRL+
Sbjct: 1 MAICDGFVTPALSLRNCLAFVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQILPKDTLEAVLVGLCGPAEDESAQTAGGWIEGPSG-GSGGNGTNAAAGRRHDAAGSSSRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRLE 238
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A6H5K8R2_9PHAE (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R2_9PHAE) HSP 1 Score: 282 bits (722), Expect = 7.540e-80 Identity = 267/711 (37.55%), Postives = 329/711 (46.27%), Query Frame = 1
Query: 1 AANSLKIAGVLEFLAQDELVLPTQERLEEAEGAFRSQTPSHCRSPRGSSTDRAN-PSIRCRSKLLGLPLADRHAALMMACSFGHMLPRRALVDFLCRLVLESPSGRTLFCRKAGLRHRIIG----EENKRAEARRRNGS--CCSCGGQALFGIGDAEIVGARSSGTQMPVLPPHF-STSTCAA--------------------------CKAXLACREWLDSFSARLLTGACRKLLFTASLPE-EILALNRCLVALSGALMPPKPVTPWPDAQWEKGTLRPNSWSDGPSSSDRIAGSSSGKHPAPDTLVMSAENSGNCPKCSDQGVSRREWTEVGARRPISTILAGVRKEQRHNKWGRNVNDKTALCSDIDRRDGENTPGMGKRSRDVVSTGSSSQPPSRKVAKAPAVSLPSPRNHAGSPGVAVTEHKSVASIESTEQLSVRTTWVNTDDSITGIREARAPPDGEHQAPLTNNGSEGAAKVAGHDTRTNTQDRGGEEXXXXXXXX----EDYLPTALRETMTAVSEKLAAAGARGAPSGDLKTAAAATVLLLQDAV-----SASAHPMARRA----------FAQQNQERKQQPFEVVCKGLGLDKPAGKESGGEGGCGDDLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQD-LGSAQCELCTRLIKQV 1968
+ANSL +A VL L+Q+ELVLP + R QTP + D A P + CRS+L G+PLADRHAAL +ACS H LPRRALV+F CRL+L GR L + H G E+ RR+ G C+CGGQ LF G G HF S AA C++ L R WLD SARLL AC KLL+ +LPE E LAL+RCL ALS L DR S + L+ +SG+C + E G R IS + AGVR+ R + T M +RS G + + V + PA P+ R S GV IE + L+ R+ + + +G EA XXXX E+ LP+ LR+ + +V+EK+AAAGARGA S D++ AAAA V LL++A +A P A F + + + QQP E VC G+GLD P GK + GCGDDLVMAVC+GFVT ALSLRNCLAF AVLVPRAR+L+ PASRLLVTAVSGIGKARPG IDGL+LPLLC DP +GSAQCELCTRLIKQV
Sbjct: 53 SANSLNVAEVLHALSQEELVLPVARS--GSASCRRHQTPHRA------NLDSAELPQLACRSRLFGMPLADRHAALTVACSLRHKLPRRALVNFCCRLILGKDIGR-LPPGSSSEAHDGSGDPPTEQIPPGACRRQGGGRGLCACGGQ-LFASGGKTRASPEIEGGSAETHTRHFVSPDDVAAVRGAXXXXXXXXXXXXXXXXXXXXTTCRSCLGRRAWLDLGSARLLVVACHKLLWGKALPEDEALALDRCLRALSEVL------------------------------GDRDQSRRSRSKREAEELLAGGGSSGSCGVLPVSAAAVPE----GRVRGISAVRAGVRR--------RRIGSMTTNSXXXXXXXXXXXXXMERRS-----AGDAGSVSAGWVPRLPA--SPTTRGSKNSTGVRGVGFARATEIEPSSALADRS-----ERAASGAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNNTARDEECLPSVLRQRVASVAEKVAAAGARGAASTDVQGAAAAAVSLLREATKLPSNTAPTSPPTTLAVDGSSSSTGPFYDRPRPQLQQPLEAVCSGVGLDIPRGKGATATAGCGDDLVMAVCDGFVTPALSLRNCLAFVRAVLVPRARALTAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQV 699
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A6H5KA87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA87_9PHAE) HSP 1 Score: 166 bits (421), Expect = 5.230e-44 Identity = 91/157 (57.96%), Postives = 108/157 (68.79%), Query Frame = 1
Query: 1954 LIKQVLPKHTLEAVLCGLCGGPTMPDAG-----------GGGRSVDPGAREGGKF--------CVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRLDK 2367
L+ ++LPK TLEAVL GLCG PT ++ GGG A G + CVWTELT+P++T ALNLKP LSD+AI LVR VEAA+E+ LQKSLKFTTL+HSLVTRYGPQ KPHV +R ++GRCSTFMVK VL ALQRL+K
Sbjct: 9 LVWRILPKDTLEAVLVGLCG-PTEDESAQTAGGWIGGPSGGGNGTGTNAAAGRRLYAAGSSLRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRLEK 164
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A836CB37_9STRA (FA_FANCE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB37_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.030e-35 Identity = 91/241 (37.76%), Postives = 122/241 (50.62%), Query Frame = 1
Query: 1711 AVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLC-DTDPQD-----------------------LGSAQCELCTRLIKQVLPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRL 2361
AVC VT AL LR C F L+PRA +LS PA R LV+ V+ K RP A ++GL++PLL D D GSAQCEL R + LP H ++ C DP C W + T+ ++T+ L +K +L D A+ L ++EA +E+ E KSLKF TL+H+LV +YGPQA PH A +R + + +TFM K+ L ALQRL
Sbjct: 1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAAC---------------DP-------RCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRL 219
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A7S2SSX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSX3_9STRA) HSP 1 Score: 137 bits (346), Expect = 3.010e-30 Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1
Query: 1693 GDDLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQDLGSAQCELCTRLIKQVLPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIIT---AALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRLDK 2367
GD ++M + F ++ C AF V++ +A L PA+R+ V+ +S + KARP + +L LLC Q +GSAQCEL TR+IK LP LE +LCGLC P + G + CVW+++TMP++T AAL + SD A V+V ++E + P L+ SLK LVH++++R+G AK H +R + + +FM K+ L AL R K
Sbjct: 364 GDGVLMLLAQNFTQPSIGQHACSAFLQHVMLAKALDLKKPATRVFVSTLSQMAKARPEIFVQNFLLGLLCRPAEQ-VGSAQCELGTRMIKLGLPVACLEQLLCGLCRPP----------------QAGSRSCVWSDVTMPLVTGLLAALAKHSISSDTA-AVVVDRLEMVVDTPALRSSLKLANLVHTMISRHGKHAKEHERALRAVVSKLDSFMAKSTLLALDRAVK 573
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A7R9Z4A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4A9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.910e-18 Identity = 71/233 (30.47%), Postives = 118/233 (50.64%), Query Frame = 1
Query: 1699 DLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSG--PASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQDLGS-------AQCELCTRLIKQVLPKHTLEAVLCGL-CGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKP--HVATVRMSIGRCSTFMVKTVLGALQRL 2361
+L+ ++ + +S A+ + ++P +L+G PASR L++ S + + RP + L++P LC GS A C+L R++K K + +L GL CG P G + + G+ K VWT+ ++PI+T+ +N + L D I L R+V+ P ++KS+KF+TL H+LVT+YG Q + V + S TFM KT+ L++L
Sbjct: 239 ELITSLSKKCINQGISAIRATAYLRSFVLPLLSNLNGSKPASRTLISTTSWLARERPSETVKALLIPSLCVPIDVRKGSSNGGPNKALCDLVGRVVKGAKEKEPIAELLTGLVCGDPA------GVKIISGGSCSSDKM-VWTDESIPIMTSCINKRATLPDATISELSRQVQLLV--PNMRKSMKFSTLFHALVTKYGNQLRKLSMVGDLTQSAEMLETFMGKTITSVLRKL 462
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A0M0JJ71_9EUKA (Fanconi anemia group e n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJ71_9EUKA) HSP 1 Score: 84.3 bits (207), Expect = 2.760e-14 Identity = 65/223 (29.15%), Postives = 102/223 (45.74%), Query Frame = 1
Query: 1696 DDLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQDLGSAQCELCTRLIKQVLPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQKSLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRLD 2364
D+ ++ C +S R+ AF L+PR ++L PASR L A+ + K +D L++P + +L +AQ E RL+++ P L L G EGG+ WTE ++ L+ P L + L+ + +A E L+KSLKF L+++LV +G Q H+ VR R +FM KT+L A+ +LD
Sbjct: 53 DEALLCACQAASQPDVSGRSAAAFVRVALLPRLQALDQPASRTLFAALLCMMKQHARVLLDELVVPAMWSR-AGELTAAQAEALQRLVREA-PAPLLGRALAAFLRG------------------EGGEPTRWTEPQAALLQTLLSRAPPLEPGCVAELLLQADAYVEA--LRKSLKFANLLNTLVRSHGAQLLAHIPAVRRVAERLDSFMKKTILAAIAKLD 253
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: B8BUU0_THAPS (FA_FANCE domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUU0_THAPS) HSP 1 Score: 86.3 bits (212), Expect = 1.280e-13 Identity = 66/229 (28.82%), Postives = 104/229 (45.41%), Query Frame = 1
Query: 1696 DDLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSG--PASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQDLGSAQCELCTRLIKQVLPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVE---AASEQPELQKSLKFTTLVHSLVTRYGPQAK--PHVATVRMSIGRCSTFMVKTVLGALQRL 2361
D V ++ ++T A AF A ++P + G PASR+L + ++ + + RP ++ +++P L T + QCEL R+++ K L L + G G WT TMP+ TAALN +P LSD + L ++ + P L+K +KF+TL H+ VT+YG Q V ++ R TFM KT+ L +L
Sbjct: 447 DTTVSSLVKEYLTDATGALRANAFLRAFVLPLLLGMQGGKPASRVLTSVLASLARDRPIECVESVLVPTL--TGKIEPSRFQCELIARVLRG---KDALSVAAVALLVEKVLSTTGSTGG------------INWTAHTMPLFTAALNRQPALSDDIVATLADQIAFHLSTDASPSLEKDMKFSTLFHAFVTKYGKQLSLVGKVVSLEECTTRLKTFMNKTISTTLTKL 658
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: A0A329T1M1_9STRA (FA_FANCE domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M1_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.490e-13 Identity = 69/256 (26.95%), Postives = 115/256 (44.92%), Query Frame = 1
Query: 1621 FEVVCKGLGLDKPAGKESGGEGGCGDDLVMAVCNGFVTSALSLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQD----LGSAQCELCTRLIKQ--VLPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQK---SLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRL 2361
F+ +CK L +D + D+ + + + V S S R F ++P+ R+ SR+L+ G + G+ +D L+LPLL + D +G Q E TR+++ +P L+ L T D +DP + E + + LN KP+LS + LV EA E+PE ++ SLKF T++ +L+++Y Q HV T+ + ++ M KT L +LQ+L
Sbjct: 277 FQYMCKVLRMDSTS-----------DEALSQITSALVDSNWSSRYAAIFLETSVLPKIRAAGSVISRVLLQTALRFGSSYAGSLVDSLLLPLLVGGEHDDPNNAVGPPQAEAITRILRSPDTIPADQLDKFLQKSLEAVTAND------KMDP-------HLLSNESALLVFQNILNTKPVLSALTVERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCAGHVETLEAIATQLTSIMAKTTLRSLQKL 508
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Match: D0MYT1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MYT1_PHYIT) HSP 1 Score: 79.7 bits (195), Expect = 1.760e-12 Identity = 77/300 (25.67%), Postives = 130/300 (43.33%), Query Frame = 1
Query: 1528 VLLLQDAVSASAHPMARRAF---------AQQNQERKQQPFEVVCKGLGLDKPAGKESGGEGGCGDDLVMAVCNGF---VTSAL-----SLRNCLAFFSAVLVPRARSLSGPASRLLVTAVSGIGKARPGAAIDGLILPLLCDTDPQDLGSAQCELCTRLIKQV--LPKHTLEAVLCGLCGGPTMPDAGGGGRSVDPGAREGGKFCVWTELTMPIITAALNLKPLLSDKAIGVLVRKVEAASEQPELQK---SLKFTTLVHSLVTRYGPQAKPHVATVRMSIGRCSTFMVKTVLGALQRL 2361
VLL + +A+ +A RAF ++ F+ +CK L +D + D+ ++ + + SAL S R F ++P+ R+ SR+L+ G + G +D L+LPLL + +G Q E TR+++ + +P L+ L T D ++ P + E + + LN KP+LS I LV EA E+PE ++ SLKF T++ +L+++Y Q HV T+ + ++ M KT L +LQ+L
Sbjct: 13 VLLSRSEATAAVDDVATRAFDMLAEVVNDVHTTYAANERSFQYLCKMLRVDSTS-----------DEALLQITRNVSIPMLSALFDSNWSSRYAAIFLETSVLPKIRAADSVISRVLLQTALRFGSSYAGTLVDSLLLPLLVGGECDAVGPPQAEAITRILRSLDTVPADQLDGFLLKSLEAVTAND------NLHP-------HLLSNESALLVFQNVLNTKPVLSVLTIERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCSGHVETLEAIATQLTSIMAKTTLRSLQKL 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2670.7300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2670.7300.1 >prot_H-paniculata_contig2670.7300.1 ID=prot_H-paniculata_contig2670.7300.1|Name=mRNA_H-paniculata_contig2670.7300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=715bp MMACSFGHMLPRRALVDFLCRLVLESPSGRTLFCRKAGLRHRIIGEENKRback to top mRNA from alignment at H-paniculata_contig2670:551..6615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2670.7300.1 ID=mRNA_H-paniculata_contig2670.7300.1|Name=mRNA_H-paniculata_contig2670.7300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6065bp|location=Sequence derived from alignment at H-paniculata_contig2670:551..6615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2670:551..6615+ >mRNA_H-paniculata_contig2670.7300.1 ID=mRNA_H-paniculata_contig2670.7300.1|Name=mRNA_H-paniculata_contig2670.7300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4290bp|location=Sequence derived from alignment at H-paniculata_contig2670:551..6615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |