mRNA_H-paniculata_contig26682.7290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26682.7290.1
Unique NamemRNA_H-paniculata_contig26682.7290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26682.7290.1 vs. uniprot
Match: A0A2Z7D0Y8_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7D0Y8_9LAMI)

HSP 1 Score: 49.3 bits (116), Expect = 5.960e-5
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   52 ELTRVRKDFENLAVQQNETPNEFLARSFVIVERMKEIGVDMTETNVHHQMVRSLPDRFAIAEHMMLVKKDLS 267
            +L  +R++FE L++Q NE+  +FL+R+  +V RMK  G ++ +  V  +++RSL  RF      +   KDLS
Sbjct:    3 KLQSLRREFETLSMQSNESVQDFLSRTKAVVNRMKSYGENINDGTVVAKILRSLTPRFDHVVAAIEESKDLS 74
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BLAST of mRNA_H-paniculata_contig26682.7290.1 vs. uniprot
Match: A0A2H9ZYF2_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZYF2_9ASPA)

HSP 1 Score: 52.0 bits (123), Expect = 7.230e-5
Identity = 30/96 (31.25%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    7 AWNIFEDWFRDTT---SGELTRVRKDFENLAVQQNETPNEFLARSFVIVERMKEIGVDMTETNVHHQMVRSLPDRFAIAEHMMLVKKDLSRKDLEE 285
            AW I E  ++ T    +  L  +R+DFENL +  +E+  EF +R   +V++++ +G  + E  V  +++RSLP +F      +   KDL    L E
Sbjct:   11 AWTILETEYQGTNKVITVNLQNLRRDFENLVMNDSESVQEFSSRVNAVVKKIRTLGEILPEQKVVEKVLRSLPPKFNFVVAAIEESKDLRTYSLNE 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26682.7290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z7D0Y8_9LAMI5.960e-536.11Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A2H9ZYF2_9ASPA7.230e-531.25Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26682contigH-paniculata_contig26682:296..742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.2258387-CDS-H-paniculata_contig26682:295..7421622929800.2258387-CDS-H-paniculata_contig26682:295..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26682 296..742 -
1691481016.3183012-CDS-H-paniculata_contig26682:295..7421691481016.3183012-CDS-H-paniculata_contig26682:295..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26682 296..742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26682.7290.1prot_H-paniculata_contig26682.7290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26682 296..742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26682.7290.1

>prot_H-paniculata_contig26682.7290.1 ID=prot_H-paniculata_contig26682.7290.1|Name=mRNA_H-paniculata_contig26682.7290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
SGAWNIFEDWFRDTTSGELTRVRKDFENLAVQQNETPNEFLARSFVIVER
MKEIGVDMTETNVHHQMVRSLPDRFAIAEHMMLVKKDLSRKDLEEGVRTA
KLEMDLEDEPGKGGNGHALFAAAAVSGGGNRGKHQQHQQRQQQQPWHRQ
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mRNA from alignment at H-paniculata_contig26682:296..742-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26682.7290.1 ID=mRNA_H-paniculata_contig26682.7290.1|Name=mRNA_H-paniculata_contig26682.7290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig26682:296..742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGAGCGTGGAATATCTTTGAGGACTGGTTCAGAGACACAACATCTGG
AGAGCTTACTAGAGTTCGTAAAGACTTTGAGAACTTGGCAGTACAACAAA
ATGAGACACCAAACGAATTTCTGGCTAGGTCTTTTGTCATTGTAGAGCGG
ATGAAGGAGATTGGTGTTGACATGACAGAGACAAACGTTCACCATCAGAT
GGTTCGCTCGCTTCCCGATCGTTTTGCTATTGCGGAACACATGATGCTTG
TGAAAAAGGATTTGTCTAGGAAAGATCTTGAGGAAGGGGTCCGAACTGCC
AAACTGGAGATGGACCTCGAGGACGAGCCAGGCAAGGGGGGAAACGGGCA
TGCCCTTTTTGCCGCTGCCGCAGTAAGCGGCGGCGGTAATCGGGGCAAAC
ATCAGCAGCATCAGCAGCGCCAGCAACAGCAGCCATGGCACCGTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26682:296..742-

>mRNA_H-paniculata_contig26682.7290.1 ID=mRNA_H-paniculata_contig26682.7290.1|Name=mRNA_H-paniculata_contig26682.7290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig26682:296..742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGAGCGTGGAATATCTTTGAGGACTGGTTCAGAGACACAACATCTGG
AGAGCTTACTAGAGTTCGTAAAGACTTTGAGAACTTGGCAGTACAACAAA
ATGAGACACCAAACGAATTTCTGGCTAGGTCTTTTGTCATTGTAGAGCGG
ATGAAGGAGATTGGTGTTGACATGACAGAGACAAACGTTCACCATCAGAT
GGTTCGCTCGCTTCCCGATCGTTTTGCTATTGCGGAACACATGATGCTTG
TGAAAAAGGATTTGTCTAGGAAAGATCTTGAGGAAGGGGTCCGAACTGCC
AAACTGGAGATGGACCTCGAGGACGAGCCAGGCAAGGGGGGAAACGGGCA
TGCCCTTTTTGCCGCTGCCGCAGTAAGCGGCGGCGGTAATCGGGGCAAAC
ATCAGCAGCATCAGCAGCGCCAGCAACAGCAGCCATGGCACCGTCAATCT
GGAGCGTGGAATATCTTTGAGGACTGGTTCAGAGACACAACATCTGGAGA
GCTTACTAGAGTTCGTAAAGACTTTGAGAACTTGGCAGTACAACAAAATG
AGACACCAAACGAATTTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATG
AAGGAGATTGGTGTTGACATGACAGAGACAAACGTTCACCATCAGATGGT
TCGCTCGCTTCCCGATCGTTTTGCTATTGCGGAACACATGATGCTTGTGA
AAAAGGATTTGTCTAGGAAAGATCTTGAGGAAGGGGTCCGAACTGCCAAA
CTGGAGATGGACCTCGAGGACGAGCCAGGCAAGGGGGGAAACGGGCATGC
CCTTTTTGCCGCTGCCGCAGTAAGCGGCGGCGGTAATCGGGGCAAACATC
AGCAGCATCAGCAGCGCCAGCAACAGCAGCCATGGCACCGTCAA
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