mRNA_H-paniculata_contig2666.7284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2666.7284.1
Unique NamemRNA_H-paniculata_contig2666.7284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: D8LC10_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 6.940e-122
Identity = 221/305 (72.46%), Postives = 249/305 (81.64%), Query Frame = 1 
Query:   94 MFRSSALSVALVALASASCTAFVPAPIARVSNVGRSSSPSTTAVMSMKSPGGKGGSPINKAASIVSKALFSRTNGKSNGNNMGGXXXXXXXXXXXXXXNDQEAFD---AEGDGLDGGMAMMGVLATLKSGAGGAWDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            M R SAL  ALVAL S+SCTAFV   + RV        PSTT+ MS+K P G+  SPINKAAS+V KALF R  G   GN    XXXXXXXXXXXXXX  Q +FD    EG G+D  +AM+GVLAT+K GAGGAWDAYN+ L + PILVKACTS VGFSIGD LAQK T+ +  +FSY RLARMAAFGFLFHGTISHFFYNALD+ALPGTAA TVIQKV+IDQVFWAPIFT+IFFTW+G+TSG+SPS+IV K+K+DL++GVVGSWTVWPLAHTINF+FVPTEQRLLYINSIQIFYNVFLSIIGSK
Sbjct:    1 MVRCSALPAALVALGSSSCTAFVTPLVTRVPVA-----PSTTS-MSLKGPAGRSSSPINKAASVVGKALFGRPGGVKMGNXXXXXXXXXXXXXXXXXXX-QGSFDDNEEEGRGMDA-LAMLGVLATVKDGAGGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQKGTSKE--SFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A836CE62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE62_9STRA)

HSP 1 Score: 249 bits (637), Expect = 4.000e-74
Identity = 125/198 (63.13%), Postives = 144/198 (72.73%), Query Frame = 1 
Query:  412 EGDGLDG--GMAMMGVLATLKSGAGGAWDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            E DG D    +A MGVL  L       WD+YN  L E PIL KACTSLVGFS+GD LAQK   AK   F Y+RLARMAAFGF+FHGTISHFFYN LD  +PG     + QKV  DQV WAPIFT ++ TW+G+TSG SP ++ +KIK DL+KGVVGSW+VWPL H I F+FVP EQRLLYIN IQI YNVFLS++GS 
Sbjct:   95 EEDGNDAMIALAAMGVLGDL-------WDSYNKVLGEKPILTKACTSLVGFSVGDTLAQKFV-AKGERFDYQRLARMAAFGFMFHGTISHFFYNKLDEVIPGKTPLAIAQKVFTDQVLWAPIFTFVYLTWMGVTSGLSPPEVGEKIKTDLVKGVVGSWSVWPLVHAIGFKFVPLEQRLLYINCIQIGYNVFLSVLGSN 284
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A7S2FYX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.300e-62
Identity = 103/173 (59.54%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:  481 GAWDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            G W AYN +LE  PIL KA TS++GF++GDILAQ +   K G +   R  R+A+FGFL HGT  H+FY  LD A+PGT A  V  KV IDQV W PIF ++FF+++G T+G  P+ +  K+K DL+  V GSWTVWP+AH INFRF+PT QRLLYIN+IQIFYNVFLSIIG+K
Sbjct:   83 GLWAAYNNKLETNPILTKALTSMIGFTLGDILAQ-NFVEKKGEYDIMRTIRLASFGFLIHGTTGHWFYGKLDKAIPGTGAMQVFSKVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNK 254
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A5J4YL21_PORPP (Protein sym-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL21_PORPP)

HSP 1 Score: 217 bits (553), Expect = 6.190e-62
Identity = 103/171 (60.23%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:  487 WDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            W AYN+ LE  P+L+KA TS VGFS+GDILAQK    K+      RL RMAAFGFL HG   H+FY ALD A+PGT A+ V  KV IDQ+ WAPIFT++FF ++G   G S  DI  K+K D   GV GSW VWPL HTINFRF+P+ QRLLYIN+IQI YN+FLS+I +K
Sbjct:  117 WKAYNSALEAQPLLIKAMTSFVGFSLGDILAQKFLGPKNAALDMNRLGRMAAFGFLIHGPTGHYFYGALDRAIPGTEAWKVASKVAIDQILWAPIFTVMFFAFIGAMEGRSVDDIKQKVKRDTWTGVTGSWKVWPLVHTINFRFIPSSQRLLYINTIQIAYNMFLSLIANK 287
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.450e-60
Identity = 107/183 (58.47%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:  481 GAWDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK*KGHRAQIIE 1029
            G W AYN  L   P+LVKACTSL GF++GDILAQK    KD  + + R  R+ +FG L HG   H+FY  LD+ LPGTA  TV  KV IDQ  W PIF I+FF++LG+T G S   I  KIK DL   V+GSWTVW  AHTINF+FVPT QRLLYINSIQI YNVFLS +G+K K     +IE
Sbjct:    3 GIWAAYNRALTAQPLLVKACTSLTGFTVGDILAQKFIN-KDAEYDFMRTVRLGSFGALVHGPTGHWFYGMLDSKLPGTAPMTVATKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNK-KAPEDAVIE 183
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A7S2XWX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWX9_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.380e-59
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:  487 WDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGS 996
            W AYNA LE +PI  KA TSLVGFS+GDILAQK  +A +  F + R+AR+A+FG LFHG + H+FY  LD  +PGTA   V  KV IDQ+ W PIF   F  ++G   G +  ++  KIKNDL+K V GSWTVWP+AH INFRF+PT QRLLYINSIQ+FYN FLS + S
Sbjct:  118 WAAYNAALESSPITTKALTSLVGFSLGDILAQKFLSAGEP-FDFLRMARLASFGLLFHGPVGHYFYGFLDTKIPGTALSVVASKVAIDQIIWNPIFGTFFLGYMGFAEGKNAGEVGQKIKNDLVKAVTGSWTVWPIAHAINFRFIPTSQRLLYINSIQVFYNCFLSFLAS 286
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A2V3ITH9_9FLOR (Protein sym-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH9_9FLOR)

HSP 1 Score: 210 bits (534), Expect = 1.470e-59
Identity = 100/171 (58.48%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:  487 WDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            W+ YNA LE+ PI+ KA TSLVGF +GD++AQK    K  +    RLARMA+FGFL HG   H+FY+ALD  + GTA   V  KVVIDQVFWAPIFT +FF +LG+    S   I +K+KND  KGV  SW  WPLAHTINF F+PT QRLLYIN++Q+ YNV LS++G+K
Sbjct:   96 WNGYNASLEKNPIITKALTSLVGFFLGDLIAQKFLGEKGADIDKARLARMASFGFLIHGPTGHYFYSALDRVIVGTAPLKVASKVVIDQVFWAPIFTALFFGYLGVAERKSFEQIKEKVKNDTWKGVQASWKFWPLAHTINFAFIPTAQRLLYINTLQVGYNVILSLLGNK 266
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A6S9LPN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPN5_HETAK)

HSP 1 Score: 205 bits (521), Expect = 7.950e-59
Identity = 103/173 (59.54%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:  481 GAWDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            G W  YNA LE  P+  KA TSL GF+IGDILAQK    +D ++   R  RM AFG LFHG   H+FY  LD  LPGTA  TV  KV IDQ+ W PIF + FF++LG   G S  +IVDKIKNDL+  V GSWTVW  AH INFRF+P+ QRLLYINSIQI YN+FLS +G+K
Sbjct:    3 GLWAKYNAFLEAQPLACKALTSLTGFTIGDILAQKFINPED-DYDVARTVRMGAFGMLFHGPTGHYFYGFLDGKLPGTATTTVATKVAIDQLIWNPIFGVCFFSFLGAAEGKSGGEIVDKIKNDLMTAVTGSWTVWVPAHIINFRFIPSSQRLLYINSIQIGYNMFLSFLGNK 174
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A7S2Y4X3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4X3_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.230e-58
Identity = 99/171 (57.89%), Postives = 120/171 (70.18%), Query Frame = 1 
Query:  487 WDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGSK 999
            W  YNA LE  P+L KA TS  GF++GDILAQ      D ++ Y R AR+ +FGFL HGT  HFFY  LD+ +PGTA  TV+ KV+IDQ+ W PIF ++FF +L  T G S  D + K+K DL   V+GSW VW  AHTINFRFVP  QRLLYIN+IQIFYNVFLS +G+K
Sbjct:   46 WARYNALLETQPLLTKALTSFTGFTVGDILAQSFIEPADKDYDYMRTARLGSFGFLIHGTTGHFFYGFLDSKMPGTAPTTVVTKVMIDQLLWNPIFGLMFFGYLNFTEGKSMDDYIAKLKADLQTAVMGSWAVWVPAHTINFRFVPPSQRLLYINTIQIFYNVFLSFLGNK 216
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BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Match: A0A7S0BQD5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQD5_9RHOD)

HSP 1 Score: 205 bits (522), Expect = 8.060e-58
Identity = 105/170 (61.76%), Postives = 120/170 (70.59%), Query Frame = 1 
Query:  487 WDAYNAQLEETPILVKACTSLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNALDAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKIKNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIGS 996
            W AYN+ LE  PIL KA TSLVGF++GD+LAQK     D  F Y+RL RMAAFG LFHG   H+FY  LD  + GT    VI KV IDQ+ WAPIF + FF  LG   G S  +I  KI+NDL+  V  SW VWPLAH INFRF+PTEQRLLYIN+IQI YNVFLSIIG+
Sbjct:   90 WAAYNSLLETQPILTKALTSLVGFAVGDLLAQKYLG--DEEFKYDRLLRMAAFGALFHGPTGHYFYGFLDRLIVGTEPLKVISKVAIDQLLWAPIFGVAFFGILGAMEGKSVKEIKAKIENDLVTAVTTSWKVWPLAHAINFRFIPTEQRLLYINAIQIGYNVFLSIIGN 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2666.7284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC10_ECTSI6.940e-12272.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CE62_9STRA4.000e-7463.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FYX3_9STRA1.300e-6259.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5J4YL21_PORPP6.190e-6260.23Protein sym-1 n=1 Tax=Porphyridium purpureum TaxID... [more]
A0A835Z5E2_9STRA4.450e-6058.47Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
A0A7S2XWX9_9STRA1.380e-5958.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2V3ITH9_9FLOR1.470e-5958.48Protein sym-1 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
A0A6S9LPN5_HETAK7.950e-5959.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y4X3_9STRA1.230e-5857.89Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0BQD5_9RHOD8.060e-5861.76Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2666contigH-paniculata_contig2666:1275..8841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.8
Seed ortholog evalue3.8e-101
Seed eggNOG ortholog2880.D8LC10
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-20_004020.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size1971
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2666.7284.1prot_H-paniculata_contig2666.7284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2666 2244..8748 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.4800358-UTR-H-paniculata_contig2666:1274..22431622929799.4800358-UTR-H-paniculata_contig2666:1274..2243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2666 1275..2243 -
1691481016.0238209-UTR-H-paniculata_contig2666:1274..22431691481016.0238209-UTR-H-paniculata_contig2666:1274..2243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2666 1275..2243 -
1622929799.6381776-UTR-H-paniculata_contig2666:8748..88411622929799.6381776-UTR-H-paniculata_contig2666:8748..8841Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2666 8749..8841 -
1691481016.0736592-UTR-H-paniculata_contig2666:8748..88411691481016.0736592-UTR-H-paniculata_contig2666:8748..8841Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2666 8749..8841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.4975114-CDS-H-paniculata_contig2666:2243..25071622929799.4975114-CDS-H-paniculata_contig2666:2243..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 2244..2507 -
1691481016.0331023-CDS-H-paniculata_contig2666:2243..25071691481016.0331023-CDS-H-paniculata_contig2666:2243..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 2244..2507 -
1622929799.5151982-CDS-H-paniculata_contig2666:3708..39121622929799.5151982-CDS-H-paniculata_contig2666:3708..3912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 3709..3912 -
1691481016.040461-CDS-H-paniculata_contig2666:3708..39121691481016.040461-CDS-H-paniculata_contig2666:3708..3912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 3709..3912 -
1622929799.5614064-CDS-H-paniculata_contig2666:5665..59051622929799.5614064-CDS-H-paniculata_contig2666:5665..5905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 5666..5905 -
1691481016.0478737-CDS-H-paniculata_contig2666:5665..59051691481016.0478737-CDS-H-paniculata_contig2666:5665..5905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 5666..5905 -
1622929799.6225047-CDS-H-paniculata_contig2666:8547..87481622929799.6225047-CDS-H-paniculata_contig2666:8547..8748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 8548..8748 -
1691481016.0581071-CDS-H-paniculata_contig2666:8547..87481691481016.0581071-CDS-H-paniculata_contig2666:8547..8748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2666 8548..8748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2666.7284.1

>prot_H-paniculata_contig2666.7284.1 ID=prot_H-paniculata_contig2666.7284.1|Name=mRNA_H-paniculata_contig2666.7284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
MFRSSALSVALVALASASCTAFVPAPIARVSNVGRSSSPSTTAVMSMKSP
GGKGGSPINKAASIVSKALFSRTNGKSNGNNMGGGGMMGGGNGNGNKNND
QEAFDAEGDGLDGGMAMMGVLATLKSGAGGAWDAYNAQLEETPILVKACT
SLVGFSIGDILAQKSTTAKDGNFSYERLARMAAFGFLFHGTISHFFYNAL
DAALPGTAAFTVIQKVVIDQVFWAPIFTIIFFTWLGITSGSSPSDIVDKI
KNDLIKGVVGSWTVWPLAHTINFRFVPTEQRLLYINSIQIFYNVFLSIIG
SK*
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mRNA from alignment at H-paniculata_contig2666:1275..8841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2666.7284.1 ID=mRNA_H-paniculata_contig2666.7284.1|Name=mRNA_H-paniculata_contig2666.7284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7567bp|location=Sequence derived from alignment at H-paniculata_contig2666:1275..8841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAGCATCACGCCCACACCGACCATCAAGCAAGGACGGCTTTGGCTT
AGTCCTACTTGTACGTTCCATTAAGTTAGTTAACGGTCAAACGATGTTTC
GCTCTAGCGCTCTCTCGGTGGCCCTCGTGGCGTTGGCCTCTGCCTCATGC
ACAGCCTTCGTGCCTGCCCCAATCGCCCGCGTGTCCAACGTGGGCAGATC
ATCATCGCCATCCACTACTGCTGTCATGTCTATGAAATCTCCTGGAGGAA
AAGGGGGATCGCCTATTAACAAGGCTGCTAGCATCGTTAGCAAGGTGTGT
ATAAATTTTTGTGTGGATGCTTGTGCAGGCGTGGTGCGCTTGATCTCCTC
GGTTCGTCACGCCTCTATTGTTTATGTCTGTTGTCGTTTGCATGAAGATT
CTGTCGTATTTTGGCGGCTGTCGTAGTTGAAGCCCGAAAAAACATGTTTC
AGCTGTGGCGTTAAAAGAGATCCAAAATCAACTGTTCGTTTTGCTTGGGC
GTCGAACAATATAGGGGAAGGTGAACAGGTGGCGTGCAGTTGTTGGGCTA
CTTCTCTCTCTTTTTCTCTCTCTTTCTCTCTTTCTCTCTTTTTCTTTCTC
TCTTTTTCTTTCTCTCTTTTTCTCTCTCTATCTTTCTCTCTCTATCTCTC
TCTATCCTGTCTCTTGGTCGCCATACTGCGTTGAACGTAGGCCGGCCTCG
CTGAACACAGGGTATAGTACAGTATCTCTCTTGTGATTCTCCTGATTATG
TAGACGGATTAACCGAAGTGGGCGTCTGCTTTCCGCACCCCTCTTAGCTC
TTGAAATGTCAACATGAAGCAAGTGAATACCAACATGATGCGTCACCAGT
GAACAACAAACCTGTCAATGTCCAACAGCCCACAGCTTCCGGGTCTATGT
TTTGCGCATCTCAGCGACTTGAAGCAATAGAGATGCCACAGTACTACCTG
CAACAAAAACGACGCCACTAGCCGGCAAAACTTGGACAGACAATTGCAAT
TGTTGTTTGTCAATAAAGTGGGACCCTTTGCAACTCAGTATGTGTCAGTA
GCAAGCACCAACATTTGGAACTGCCGCGAGCGTGATGGTTCTGCACACTG
TCTGCGCTATTGATTATTCCGTCATTTGTTTAGGTAGTCTACGCCGTCAG
TGACGTTTCAGGAGGTCGATAACGTAACAACGGCACGCTAATAACAGCAC
AACTGTATGTAGCCATGTGCGTTCAGCATCCTCATAACACATCCTGAATG
GTTCACACAAAGGTCATCCCGCCTCACGCCAAATAAAAACGTGCATGAAA
TGAGCCTGAAATGCCCGCCTGAAATTGGAAACAGTATAATTGAAAATGCT
TGGGTGTTGGTATAGGAAGTATTCGGGATTTTGTTTTGAAACCGCTGGGA
CACTTCAGGAACAAAACTTCCTAACGGCCAAAGAACTAGATTTGTCAATG
ACTAGTGAATAATGACGAACACGTGGATAGAAAAGAACGCCGGCCTGCCT
TGACTCTGTTATTCCTAAAACGTATTCTGTATATTCGAGCACATGATTCA
CTTCTGCTTATCCAGGACACGGTGTACGTGAGCAATTATTGAACCATATT
TTTCAGAGAAATTCAAATCATCAATTACGGACAAAAACATGAAGTATCAA
TCCAAACTTATTTTCCAGTAAGAACGGTTATTGTTGTCTTTTTCCTGGTC
CCGTGTACTGCACTTTACTGCTTCCTGAACTTTGTTCACCTGAATTCAAC
TCAAGATCATCGTTGCCATAACTCACTAGAGGGGTCGCTATTGCTGTCAC
CCGTCACCTACGTCGATTGGGGTACGGTCATCTGTCTGTCCTACTGGAGG
TTTGAAAATTCAGACTACGGAATATGTTCGTTGTGAGATTGTCATCTGTT
GTTTTTCACGTCAATAGTCATAATCCAAATGCAATATGAGTATCAAACAA
GTTTCGTTAGGCTGGAATGAGCACGAAATATGCGCTGTTTGAGAGGGAGA
AAACATGCTGAAGTCCCATTTGAGCATAATTAAGCAATACAAGCATCAGC
ATTGGATTAAAATCCAAGTCTCGACCTTGAGAGCACCAGAGCTTGGAGAA
GAGGAAAGACGAAGCCTGATAGTTCCGCGGCGAAACCGCGGCGAATGGGG
GGTCTTTTTTTCACCAGGGGGGTTGCTCCTGATCTCGTAATTAGAGTATG
GTGGCACGTTCTACACGACAAACATAGTGCCAGGCTGATCATCCAAGTTG
ATCCACCCAACGGCCAATGAAGAACGTGTCGTGTCCCATACATGTCAAGT
TGGGTTCGGCTCACAGGAACTTTACGGCGGTCGAGTGAGGTCGCACAAAA
GTACAGTATTCGTGATTCCCTTTTTGGTCTGGTTTTGTGTGCGCGGCAGA
CGCGTATTGTCTACAGCGAGGATTAGAGCGATGGCAAGACATGGTATGCC
AGAGTACTCTGCCACAGTGGCTGTGGCCGATGCTTCGAAACGACACAGAT
GCAGCTGTGCGATACACCCGTCGGTATTTTGCTGTCTGCACTATCTGCGA
GTGTCGAATCAGCGCCGTGAGAGCCATCGTGGAGTTGTTGATCTTGATCC
CTTTCTTGCGGCTTGTTGTGGCACACACGCCCCGCACAGTCAGTCACTCC
GAACGTCTGATTTGCGTTTCGTTTTCAATCAGGTGGTGCTGCCTGCTGCT
GTCGTGAAACACCAAACCATGCCAACTCCCGTCTGTATGTTTTGTAGTAA
TTACAGGACCGTCTGCACCGTATATCGAGTACCGTTTCCCCGCCATTATG
TAGAAGGCGTCTGTCACGAATAAAATCCTAGAGGGCTCAAGCTTGTTCCC
AAGCAGGGATTGTATATGGATTGTACATGGCCCGGTGCCATAGAGGTTGA
ACAAAAACGACGCCAACGCATGTCGCCAACATACAGGCCCTCTTCAGCCG
GACGAATGGCAAGTCCAACGGCAACAACATGGGAGGAGGCGGAATGATGG
GCGGAGGCAACGGCAACGGCAACAAGAACAATGACCAGGAGGCCTTTGAC
GCCGAGGGTGATGGCCTGGACGGCGGCATGGCCATGATGGGTGTGCTGGC
AACTCTCAAGTCTGGGGCGGGCGGCGCGTGGGACGCTTACAACGCCCAGC
TCGAGGAGACACCAATATTGGTCAAGGTGTGTGTGTGTGTTTGCTGTGCT
TTACTGTAGTGTACTGCGATGTGTTGTGTGCTGTGATGTGGTACTGGACC
ACTGTCCTGCTTGGCGTCTTGTACTGTGTATATTGTGCCGCGCGCACTGT
GCTGCGCCTCATCACCGACGGAGAACATTTTTTATGGTCAAGATTTGTCA
TAGCCTGCTTTTGGGTATATTGTGTCTCAGCTGTGGTTTAGGGGAGCCTT
GGCTATCCCCATGTATCATACTCCAGTTCTTGTATATTTTTGTCCTCGTC
CGAAGGCCTTACCAATGGAATCCACCGAACCAGGGCACCCCTCCCCCCCG
CGATGGCTTCAGAATCAAAAAAAGATTGAGGACACCTGAATTATTTTGTT
ACTCTACCAATTTAATGATTGGGCTAGTGCTTCACACAGCAAGGGTTACG
TACACCTAAGCAAGTTCATATTTCGCGCATTTTTCGTTCAATTGGTGCCG
AAAACCCCCCAAATACTTGACTAGGTCAGCTCATGAAGAGGAGTGAAATT
TCGAACGTTTCGTGTGTTCGACAAGCGTTTCAGGTGATCTTGGTCGGGTA
GATTCCGAAGTGAAAGCAGGTGATGGTCCACTTATTTCACGTGAGCTGCT
GACTGAGTGGTACGTCGCGGGGCAACAGGATTACCCAAGGGCTCGCTAGA
TTAAGATGTCACAACTAGTGCACCTGGACATTTCTCCGTCGGCAGTTGTG
TTCCTTCAGCTGTTCTCGAGTAGGTCAAGAGTACCACGTGTTCGCGTCGT
ATTCCTGACCCTCGGAACCATAATTTGTAACGACCACAACGTAGAGTTGC
TAACGGTTAGTCGAGAATTATTGACGGGCACATCATGATAACTCAACAAG
CTCTAGATAGTTCGCCAATGTATCTCAGGTGCGAAAGGAGGTTCATTTTT
TGCCGATTCGGGGGCTTTAAACTTGCATCCAATAAAAGGGGGGAAAGGTC
AAGCGTCTGTTCTTTTTGTAACGGCCAAATAGCAAAGAAGCACTCCACAG
CTTGATGAGAGGGTGTGAAGATCCTCAATAGTTCACATCTAAGTCTTCTC
AACCCTAACCCGGATATTTTCAAGCGAAAAAATGATGAGCGTGGCCAAGC
TTCGTCGAAATATTTCTGAACGTAATATCCACGGGTCCGGATTGTTTCGA
TGTACTATTGGGGTAGGACTAGGTTTTGATGAGAGCTATATGCACCTGGT
ATAAGTGTGTGGCACATGGTCAGATGTGTATGCCCATACCTCCAAATGTT
GTGGCTGAGAAAATTTAGTTCCTTACTGAGAGAGCTAGGGGCCACAGTTC
GCATACCGGGAGGACGTTACTTCCAGCACAAAACGGGCCATGGTCCTTCC
AGTAGTTTGGTAAACAATGACCTGCGCTACCGGACGTGTCAGTCATGGTG
TGGAATCACCAGCCCACACTTTCGAGGTGTGTGGCGCCACACCTCTCGCT
CTGAGAACTGTGATCTCGTACTCGTCACAACCTCAACAGAGTTGGCTACA
CCGTAAATAATGTGGGCCACACTGCCCAAATTGAGAACCTCCTATAGGAT
GTGGATGTTGAGGACAGTTCCCATGGTGTGGCATCGATAAACCATAGATA
TTGAGGTGGGCAGTGTCAGACTAGACTTACATTAGATATGTAGATCATGA
CGAACCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCTCCTCCTGCGCTCTGATATCTCACTAGGCGTGCACCTCGTTGGTAGGC
TTTTCTATCGGAGATATTTTGGCGCAGAAATCGACGACCGCGAAGGACGG
CAACTTCTCGTACGAGCGCCTGGCCCGCATGGCCGCCTTCGGCTTCCTTT
TCCACGGAACGATCTCGCACTTCTTTTACAACGCCCTCGACGCCGCGCTG
CCCGGGACTGCCGCTTTCACCGTCATCCAGAAGGCAAGTTTTCTTTTTAC
TATTTGAGGTTGAGGGTACAGAGTCAAAAGGAAAATCATATCAGATTTTC
ACATATGTTGGTTGAAAATAAAGCTCAAGCAACATATCGTTAACGTGATT
AGTAAGAAATGCCAGTCAGTTGATTAAAAAAGGATGAAATATATTTTTTG
GCATGACCATCGGTTGCAATGTCCATAGGGTATGTTTTGAAGCCTCGGCT
CGATTTTGAAGTAACATTCAGTGGAAGATGGATTTCTTTTGTTGAATATA
CATTAGGAGGCCGATCCTACGACGATATCCTGTTACCATCGGATTTTGAT
TGTGCATGCTTCTGGTATAGAACTCTAGCGGATCGGTTCTCCCCATGTAT
ATACACGGAATAATAGTGACAGCAATTTTCCATTGAGTTTAATGCTCTGA
TCTCTGACACTGGGTTTTCTGCTAGTAGGTGGGCATAAGCGTTGTATCCA
TCATCCTATGCAAAACTAGGCAGGTGCACACACTTCAACGTTACTGTGTA
CAGTCTACCTTTGCCCTCACATTTGGTACACATTGTCACTAGTACGTTCC
ATACATGACGAAAAATTGGTATTTGAACTCAAGGATTTGTTCTCGTGCCA
GCGTGTATACTTGACTAGACGCCCAAGGGTGCGAGTTTGTTGGACCTGTG
TTCTTATCAAAAGTCGCCTTGAAATATCCGTTGATACGCGAAGTCGATAT
ATATGGGTACATCGCCAATATATTGGTGTTTGGCCTGTGAGAAGCGCTTA
GCGAGTGCGAAACACGAGCATGCGAACGCTTTCGCTTGAGTCAACCCCCC
CCCCCCCCCCACGGGCCCTGGCGAAGGGGGGAGAGCTTTCCCGAAGACAG
AATTTATACCCATTTGGGGTTCATCCATCCGCAAAAATATGAAATAGGAC
ATATCGCGAGAGTTCAGCACCTTGAAGAAATGGATGAAGAATTGGAAAAA
CAGGGAGAAAGTGGGTTCAAACTACCTACAATAATGGCAAAAATGCAAAA
TACACCAATACCTCTGAACAATGGTTTCTTGTTTTTTTCATTATGTGTGT
ATTTTTATGATGGGAAGATTATCAGGGTCCTAATATTTTGAATGACTTGA
ACGCCCCATCCTCACCCCCCTCTACTTCCCGCCCCTGTGCCATGCGTGAC
CTTCCCGCTGAAATCACCTTCTCGGTATTTTCAGGTGGTGATTGACCAGG
TGTTCTGGGCACCAATCTTCACAATCATCTTCTTCACCTGGCTCGGCATC
ACCTCTGGATCTTCGCCCAGCGATATTGTGGATAAGATCAAGAACGATTT
GATCAAAGGCGTAGTAGGGTCATGGACTGTGTGGCCGCTTGCGCACACCA
TCAACTTCCGTTTCGTGCCCACCGAGCAGCGTCTGTTGTACATCAACTCC
ATCCAGATCTTCTACAACGTGTTCCTTTCCATCATTGGCTCGAAGTAAAA
AGGCCATAGAGCACAAATTATAGAGGGACGAAATATGGTATTGTGGGTTT
GTGCGTACGTACGTAAGGGCGTGCTTGCGTGCGCGATTTTTTATTCAAGA
GAGCCACAGATCGTCATGCCCTCGATATAACGTCGAGCGTAGGGGTTTGC
AGCATGCATCATGGATGGGAGAAGCCTTTCGAATAATCTGTTTCTTTTTC
CGTCACATTTCTTCCTTTTTTTTCCGGGGTTGGAAGGCGAGAGCTTGGGT
TCTGTCGAAATATGTCCAGGTTGTTGGGGTATCTTGGAAGATGACGGATT
GAAGAGTTCGGGAAATGATGACAAAAATGAAAATGACACATTAAAGAAGT
GCAGGTTGAAAGGGAGGGTCCCGGATATAGCTATCAACTACTGGCTTTGT
TGTGACTTGAAAAGGAGGAAGCGTTTTCTGGCCGTTCGTTCTTCAGCGAT
GGGGAGTGGGCGGTGGTACATAAGAAGGTGATCCATGTGGCGTGTTGCCA
TGACATAGACTACTTTTGATCGTTCGACTGTACACTTCAATCCCGTAAAA
AATGATGTCTCGAGAGCCAAGGCGTCGCAATGTAAAAGCACGTCAGCGCT
TGAAGAATTCAATTATAACTCACCTCGGGGGCACTTCTGCAGCCGAGCAT
GTACAGGGAATCGTCTTGGGATGATAACGACGAATTTCCGGGCAAATTGA
ATAGAATCATTCATGTGTGCATAAGGTGAAGGCAACCCGCTACGTCTGCT
TGCTGGCATAATAGATGTGCTGTCGGAGAGTGTCGAGATCGATTCTTCTT
GTTTGGTTGCGATGGCATCTCTTGTATCAGTAGAGCTCTATTCCTAGTTA
ATTTAAGTATAAGTTTAGCGCTATGAAGCTATCACAGCGTTAGCCTGTTT
GATTTTGTTTTTTCTAGTTAGTTATTGGAGTAGTGGCCAAGTTGCCACCA
GGAACGTTCTTTTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2666:1275..8841-

>mRNA_H-paniculata_contig2666.7284.1 ID=mRNA_H-paniculata_contig2666.7284.1|Name=mRNA_H-paniculata_contig2666.7284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig2666:1275..8841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCGCTCTAGCGCTCTCTCGGTGGCCCTCGTGGCGTTGGCCTCTGC
CTCATGCACAGCCTTCGTGCCTGCCCCAATCGCCCGCGTGTCCAACGTGG
GCAGATCATCATCGCCATCCACTACTGCTGTCATGTCTATGAAATCTCCT
GGAGGAAAAGGGGGATCGCCTATTAACAAGGCTGCTAGCATCGTTAGCAA
GATGTTTCGCTCTAGCGCTCTCTCGGTGGCCCTCGTGGCGTTGGCCTCTG
CCTCATGCACAGCCTTCGTGCCTGCCCCAATCGCCCGCGTGTCCAACGTG
GGCAGATCATCATCGCCATCCACTACTGCTGTCATGTCTATGAAATCTCC
TGGAGGAAAAGGGGGATCGCCTATTAACAAGGCTGCTAGCATCGTTAGCA
AGGCCCTCTTCAGCCGGACGAATGGCAAGTCCAACGGCAACAACATGGGA
GGAGGCGGAATGATGGGCGGAGGCAACGGCAACGGCAACAAGAACAATGA
CCAGGAGGCCTTTGACGCCGAGGGTGATGGCCTGGACGGCGGCATGGCCA
TGATGGGTGTGCTGGCAACTCTCAAGTCTGGGGCGGGCGGCGCGTGGGAC
GCTTACAACGCCCAGCTCGAGGAGACACCAATATTGGTCAAGGCCCTCTT
CAGCCGGACGAATGGCAAGTCCAACGGCAACAACATGGGAGGAGGCGGAA
TGATGGGCGGAGGCAACGGCAACGGCAACAAGAACAATGACCAGGAGGCC
TTTGACGCCGAGGGTGATGGCCTGGACGGCGGCATGGCCATGATGGGTGT
GCTGGCAACTCTCAAGTCTGGGGCGGGCGGCGCGTGGGACGCTTACAACG
CCCAGCTCGAGGAGACACCAATATTGGTCAAGGCGTGCACCTCGTTGGTA
GGCTTTTCTATCGGAGATATTTTGGCGCAGAAATCGACGACCGCGAAGGA
CGGCAACTTCTCGTACGAGCGCCTGGCCCGCATGGCCGCCTTCGGCTTCC
TTTTCCACGGAACGATCTCGCACTTCTTTTACAACGCCCTCGACGCCGCG
CTGCCCGGGACTGCCGCTTTCACCGTCATCCAGAAGGCGTGCACCTCGTT
GGTAGGCTTTTCTATCGGAGATATTTTGGCGCAGAAATCGACGACCGCGA
AGGACGGCAACTTCTCGTACGAGCGCCTGGCCCGCATGGCCGCCTTCGGC
TTCCTTTTCCACGGAACGATCTCGCACTTCTTTTACAACGCCCTCGACGC
CGCGCTGCCCGGGACTGCCGCTTTCACCGTCATCCAGAAGGTGGTGATTG
ACCAGGTGTTCTGGGCACCAATCTTCACAATCATCTTCTTCACCTGGCTC
GGCATCACCTCTGGATCTTCGCCCAGCGATATTGTGGATAAGATCAAGAA
CGATTTGATCAAAGGCGTAGTAGGGTCATGGACTGTGTGGCCGCTTGCGC
ACACCATCAACTTCCGTTTCGTGCCCACCGAGCAGCGTCTGTTGTACATC
AACTCCATCCAGATCTTCTACAACGTGTTCCTTTCCATCATTGGCTCGAA
GTAAGTGGTGATTGACCAGGTGTTCTGGGCACCAATCTTCACAATCATCT
TCTTCACCTGGCTCGGCATCACCTCTGGATCTTCGCCCAGCGATATTGTG
GATAAGATCAAGAACGATTTGATCAAAGGCGTAGTAGGGTCATGGACTGT
GTGGCCGCTTGCGCACACCATCAACTTCCGTTTCGTGCCCACCGAGCAGC
GTCTGTTGTACATCAACTCCATCCAGATCTTCTACAACGTGTTCCTTTCC
ATCATTGGCTCGAAGTAA
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