mRNA_H-paniculata_contig2665.7282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2665.7282.1
Unique NamemRNA_H-paniculata_contig2665.7282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.340e-29
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDGVHTPVKLVSTSNRFHSIYTSTATNG 240
            G+AQ AV+TG+F S NYNWRS+T+PGITGLFN FCLTSA +NL  C PGDN YDGV T V L+S+ ++FHSIYT+ + NG
Sbjct:  433 GNAQIAVLTGMFNSDNYNWRSLTSPGITGLFNKFCLTSATSNLMTCAPGDNTYDGVQTDVSLISSVSQFHSIYTTESNNG 512
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.690e-21
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN +DG V     LV+  N+FHSIYT+T+ NG
Sbjct:  667 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTFDGTVSGAAILVNEDNQFHSIYTTTSNNG 747
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: A0A6H5JW45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW45_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.730e-21
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN YDG V     LV+  N+FHSIY++ A NG
Sbjct:  252 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTYDGTVSGATLLVNEDNQFHSIYSTVADNG 332
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.400e-21
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN +DG V     LV+  N+FHSIYT+ A NG
Sbjct:  694 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTFDGTVSGAAILVNEDNQFHSIYTTVADNG 774
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: A0A6H5JQ44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ44_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.360e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN +DG V     L++  N+FHSIYT+ + NG
Sbjct:  559 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTFDGTVSGAAILINEDNQFHSIYTTVSNNG 639
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.250e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN +DG V     LV+  N+FHSIY++ A NG
Sbjct:  494 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTFDGTVSGAAILVNEDNQFHSIYSTVAING 574
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.250e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDG-VHTPVKLVSTSNRFHSIYTSTATNG 240
            G+ Q A++TG++ S NYNWRSM +PGITGLFN  CL SA  NL  C PGDN +DG V     LV+  N+FHSIY++ A NG
Sbjct:  514 GNVQIALMTGMWDSDNYNWRSMVSPGITGLFNENCLDSAAQNLMVCYPGDNTFDGTVSGATILVNEDNQFHSIYSTVADNG 594
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.560e-19
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDGVH-TPVKLVSTSNRFHSIYTSTATNG 240
            G+ +  V+ G+F + NYNWRSMT+PGITGLFN  CL S   NL KC PGDN Y G   T V L++ +N+FHS+ T+  TNG
Sbjct: 1001 GNVRLGVMFGMFDNDNYNWRSMTSPGITGLFNPNCLQSGDENLMKCYPGDNTYSGAPLTAVSLINENNQFHSMTTTVGTNG 1081
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.130e-19
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGDNVYDGVH-TPVKLVSTSNRFHSIYTSTATNG 240
            G+ + A++ G+F + NYNWRSMT+PGITGLFN  CL S   NL KC PGDN Y G   T V L++ +N+FHS+ T+  TNG
Sbjct: 1014 GNVRMAIMFGMFDNDNYNWRSMTSPGITGLFNPNCLQSGDENLMKCYPGDNTYSGPPLTDVFLINENNQFHSLTTTVGTNG 1094
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BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Match: D8LD68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD68_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   46 NYNWRSMTNPGITGLFNHFCLTSAMANLNK 135
            NYNWRS+T+PGITG FN FCLTSA +NL K
Sbjct:  273 NYNWRSLTSPGITGHFNKFCLTSATSNLMK 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2665.7282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K3S3_9PHAE5.340e-2966.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ3_ECTSI3.690e-2158.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW45_9PHAE6.730e-2158.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPQ4_9PHAE9.400e-2158.02WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ44_9PHAE2.360e-2055.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLI7_ECTSI3.250e-2056.79WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLJ1_ECTSI3.250e-2056.79Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G022_ECTSI1.560e-1954.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G056_ECTSI2.130e-1954.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LD68_ECTSI1.110e-676.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2665contigH-paniculata_contig2665:6331..6571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog2880.D7FLJ3
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.3890715-CDS-H-paniculata_contig2665:6330..65701622929799.3890715-CDS-H-paniculata_contig2665:6330..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2665 6331..6570 +
1691481016.003964-CDS-H-paniculata_contig2665:6330..65701691481016.003964-CDS-H-paniculata_contig2665:6330..6570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2665 6331..6570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2665.7282.1prot_H-paniculata_contig2665.7282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2665 6331..6570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2665.7282.1

>prot_H-paniculata_contig2665.7282.1 ID=prot_H-paniculata_contig2665.7282.1|Name=mRNA_H-paniculata_contig2665.7282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
GSAQFAVITGLFKSANYNWRSMTNPGITGLFNHFCLTSAMANLNKCGPGD
NVYDGVHTPVKLVSTSNRFHSIYTSTATNG
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mRNA from alignment at H-paniculata_contig2665:6331..6571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2665.7282.1 ID=mRNA_H-paniculata_contig2665.7282.1|Name=mRNA_H-paniculata_contig2665.7282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=241bp|location=Sequence derived from alignment at H-paniculata_contig2665:6331..6571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCGCGCAGTTCGCTGTGATTACGGGTCTGTTCAAGAGCGCTAACTA
CAACTGGCGAAGCATGACCAATCCCGGCATCACCGGACTCTTTAACCATT
TCTGCCTGACATCTGCCATGGCCAACCTCAACAAGTGCGGGCCCGGCGAC
AACGTATACGACGGCGTGCATACGCCCGTCAAGCTGGTCTCTACGAGCAA
TCGGTTCCACTCGATTTACACTTCGACGGCCACAAATGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2665:6331..6571+

>mRNA_H-paniculata_contig2665.7282.1 ID=mRNA_H-paniculata_contig2665.7282.1|Name=mRNA_H-paniculata_contig2665.7282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig2665:6331..6571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCGCGCAGTTCGCTGTGATTACGGGTCTGTTCAAGAGCGCTAACTA
CAACTGGCGAAGCATGACCAATCCCGGCATCACCGGACTCTTTAACCATT
TCTGCCTGACATCTGCCATGGCCAACCTCAACAAGTGCGGGCCCGGCGAC
AACGTATACGACGGCGTGCATACGCCCGTCAAGCTGGTCTCTACGAGCAA
TCGGTTCCACTCGATTTACACTTCGACGGCCACAAATGGTGGTTCCGCGC
AGTTCGCTGTGATTACGGGTCTGTTCAAGAGCGCTAACTACAACTGGCGA
AGCATGACCAATCCCGGCATCACCGGACTCTTTAACCATTTCTGCCTGAC
ATCTGCCATGGCCAACCTCAACAAGTGCGGGCCCGGCGACAACGTATACG
ACGGCGTGCATACGCCCGTCAAGCTGGTCTCTACGAGCAATCGGTTCCAC
TCGATTTACACTTCGACGGCCACAAATGGT
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