mRNA_H-paniculata_contig26603.7266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26603.7266.1
Unique NamemRNA_H-paniculata_contig26603.7266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26603.7266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26603contigH-paniculata_contig26603:1272..2736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size259
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26603.7266.1prot_H-paniculata_contig26603.7266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26603 1284..2648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.9708645-UTR-H-paniculata_contig26603:1271..12831622929797.9708645-UTR-H-paniculata_contig26603:1271..1283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26603 1272..1283 +
1691481015.388591-UTR-H-paniculata_contig26603:1271..12831691481015.388591-UTR-H-paniculata_contig26603:1271..1283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26603 1272..1283 +
1622929798.01249-UTR-H-paniculata_contig26603:2648..27361622929798.01249-UTR-H-paniculata_contig26603:2648..2736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26603 2649..2736 +
1691481015.4394503-UTR-H-paniculata_contig26603:2648..27361691481015.4394503-UTR-H-paniculata_contig26603:2648..2736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26603 2649..2736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.9841225-CDS-H-paniculata_contig26603:1283..13051622929797.9841225-CDS-H-paniculata_contig26603:1283..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26603 1284..1305 +
1691481015.4106133-CDS-H-paniculata_contig26603:1283..13051691481015.4106133-CDS-H-paniculata_contig26603:1283..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26603 1284..1305 +
1622929797.9997096-CDS-H-paniculata_contig26603:2511..26481622929797.9997096-CDS-H-paniculata_contig26603:2511..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26603 2512..2648 +
1691481015.422632-CDS-H-paniculata_contig26603:2511..26481691481015.422632-CDS-H-paniculata_contig26603:2511..2648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26603 2512..2648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26603.7266.1

>prot_H-paniculata_contig26603.7266.1 ID=prot_H-paniculata_contig26603.7266.1|Name=mRNA_H-paniculata_contig26603.7266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MSCARLAVRMCLLEARSSERFRRQTACKIRPISPFPIPSLRVPQYSVLWP
KK*
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mRNA from alignment at H-paniculata_contig26603:1272..2736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26603.7266.1 ID=mRNA_H-paniculata_contig26603.7266.1|Name=mRNA_H-paniculata_contig26603.7266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-paniculata_contig26603:1272..2736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGCGTGCGATGTCCTGCGCGAGGCTCGCCGGTGTGTTTGTTGGTTT
GGTGGGTGTTTTGGCTCTTTCGTTCTGCGTGGTTGTTTGTATATTTTGTT
TTTTGGGGGGGTTTTACAGACAGCGGTGGATCGATTGTGCTTTTTATCTC
TGTTTTATCCCCCCCAAGACTTGAAATCATATTCAGTGGGTAGAGTGAGT
GCCATTATTGTTCCACACCTTTTCTCTGGTCTGTCGTGTCTGTGGGGATG
TCCGAACAGGTGAGCCAAGCATAGTCTCTTGGGTAGTCTTGTTGTGTACG
TGGTAGTAATTTAGCAGGTGGGAGCCTCGTTCGTCGTGTTCTCCCCTTGT
TTGTTTTTGGTTTTTCTGACGTTAGTATGTGATGGTGGCCGTCGCAGGTA
GTGAAAATGGGTGATACACCTATATCCGAATGTCAGGTGTTTGGTGTGAG
GGGCAGCGTTGCAGCTTTTTTTGCTGTTTCTGTGTGTCGACCTCTCTGTT
TGGAACTGACTGGAGAAGCGCACCCACCCCCTTGATCACGTAGCAGTATT
TTGAGTGCATTTCCCGTTCTCTTCTTTCCTGTATGTACTTGTTTTTCGTT
GAAAATTCTAGCCGCGAAGGGTAATACAGTAGGTGCTTATTGCCGCGGCT
ATGTAGTCGTGAGTAGTGATTTTTTTAGTATGGCAATAGTACAGAAAAAC
GTGAAATCCGAACATCTGTCTGGCGTCCTCGCACCTAGATGGCGTGGTTA
TTATTATGCACATTATTTTTTATTGTTTTTTTTTCCCATGTCGACTGGGT
ACTTGCTGTATGCAAATATGGTTCGAGTGCGTTGATGGAAGAACGCGAAA
ATGATCTGCTCTTGTAAAGCGCGGCTTCAATCGTGTTGTTTGGTTTGTAT
TTTTCGGGGCTTTTTTGGCGGGAGCCACCACAGAAGAGTTGGTTGTGATG
TAATACCGTCTTAACCCAGGACGACTCGAATGTAGAGCCCAGAGCTAATA
ATCTTGAAGAAATTGCCAAGCGCATCATACTGTTCTCGCTGGATGACCGC
ACGATCAGGTTTAGGCTCTGTTGAGGAGCAAACGTGATGGAGACGAATAT
ATCTCGAAATGTAAAGGTACACACACACACACTCAACACACAAATGCGTC
ACCGGCCCGTAACTAACATATTTTTGTATTGCTTTCTTCTCGTCGCTTCT
CTCTTCTTTTTTCTTGATATCTATTACAAAATGGTCCAAGTGCGCATGTG
TTTGCTTGAGGCGCGCTCCTCGGAGCGATTTCGAAGACAAACGGCTTGCA
AAATTCGGCCGATTTCGCCGTTTCCGATCCCCTCCCTGAGAGTGCCCCAG
TACAGTGTTCTTTGGCCAAAAAAATGAAAGCCACCATTTCTGAGGGTCTG
ATTTTTCATGAGTGAGAGGTGCCAATCAGTGCCGAGGAACGAATTAGTTG
GGACGCCGGGGCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig26603:1272..2736+

>mRNA_H-paniculata_contig26603.7266.1 ID=mRNA_H-paniculata_contig26603.7266.1|Name=mRNA_H-paniculata_contig26603.7266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig26603:1272..2736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTGCGCGAGGCTCGCCGATGTCCTGCGCGAGGCTCGCCGTGCGCA
TGTGTTTGCTTGAGGCGCGCTCCTCGGAGCGATTTCGAAGACAAACGGCT
TGCAAAATTCGGCCGATTTCGCCGTTTCCGATCCCCTCCCTGAGAGTGCC
CCAGTACAGTGTTCTTTGGCCAAAAAAATGATGCGCATGTGTTTGCTTGA
GGCGCGCTCCTCGGAGCGATTTCGAAGACAAACGGCTTGCAAAATTCGGC
CGATTTCGCCGTTTCCGATCCCCTCCCTGAGAGTGCCCCAGTACAGTGTT
CTTTGGCCAAAAAAATGA
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