mRNA_H-paniculata_contig26539.7246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26539.7246.1
Unique NamemRNA_H-paniculata_contig26539.7246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A6H5L9H3_9PHAE (Asp_protease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9H3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.270e-50
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   10 MSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAG-GGAREV 288
            MS ACAERCGL SRID S+AGRAVGVGFARILGRIHDA+IRIGNSYL CSFTVIEHGEIDLLVGLDVLRAHRC ISLSKN+M+FHAG G A+E 
Sbjct:    1 MSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGNSYLRCSFTVIEHGEIDLLVGLDVLRAHRCVISLSKNRMKFHAGVGPAKEA 94
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: D8LQW7_ECTSI (Peptidase aspartic, catalytic UBA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW7_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.080e-46
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 VTVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGG-AREVIRL 297
            VTVMS ACAERCGL SRID S+AGRAVGVGFARILGRIHDA+IRIGNS L CS TVIEHGEIDLLVGLDVLRAHRC+ISLSKN+M+FHAG G A+EV  L
Sbjct:  233 VTVMSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGNSCLRCSLTVIEHGEIDLLVGLDVLRAHRCEISLSKNRMKFHAGDGPAKEVAFL 332
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A3F2S3S5_9STRA (Ubiquitin-like domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.520e-27
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREVIRL 297
            T+MS +CAERCG+   +D  FAG+AVGVG A I+GR+H A+++IGN +  CSFT+++   +D L GLD+L+ H+C I L KN +R H G    EV  L
Sbjct:  187 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGRVHMAHLKIGNEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLGKNVLRLHEGDQFHEVSFL 284
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A0W8DPB6_PHYNI (DDI1 2 protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DPB6_PHYNI)

HSP 1 Score: 112 bits (279), Expect = 1.200e-26
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREVIRL 297
            T+MS +CAERCG+   +D  FAG+AVGVG A+I+GR+H A ++IGN +  CSFT+++   +D L GLD+L+ H+C I LSKN +R H G    EV  L
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMAPLKIGNEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLSKNVLRLHEGDSFHEVSFL 331
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A8K1C4K2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4K2_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 2.600e-26
Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREV 288
            T+MS +CAERCG+   +D  FAG+AVGVG A+I+GR+H A ++IGN +  CSFT+++   +D L GLD+L+ H+C I L KN +R H   G  EV
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMAPLKIGNYFYNCSFTILDQQNVDFLFGLDMLKRHQCCIDLHKNVLRLHDATGGHEV 328
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A329SNU4_9STRA (Uncharacterized protein n=44 Tax=Phytophthora TaxID=4783 RepID=A0A329SNU4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.680e-26
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREVIRL 297
            T+MS +CAERCG+   +D  FAG+AVGVG A I+G++H A ++IGN +  CSFT+++   +D L GLD+L+ H+C I LSKN +R H G    EV  L
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGKVHMAPLKIGNEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLSKNVLRLHEGDSFHEVSFL 331
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: F0W205_9STRA (DNA damageinducible protein 1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W205_9STRA)

HSP 1 Score: 108 bits (269), Expect = 9.120e-26
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREV 288
            T+MS +CAERCG+   +D  F G+AVGVG A+I+GR+H A ++IG+ +  CSFT++E   +D L GLD+L+ H+C I L KN +R H   G  EV
Sbjct:  236 TIMSSSCAERCGIMKLVDKRFEGKAVGVGTAKIIGRVHMAPLKIGSFFYNCSFTILEEQSVDFLFGLDMLKRHQCCIDLHKNVLRLHEASGFHEV 330
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A024G644_9STRA (UBA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G644_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.340e-25
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREV 288
            T+MS +CAERCG+   +D  F G+AVGVG A+I+GR+H A ++IG  +  CSFT++E   +D L GLD+L+ H+C I L KN +R H   G  EV
Sbjct:  210 TIMSSSCAERCGIMKLVDKRFEGKAVGVGTAKIIGRVHMAPLKIGTFFYNCSFTILEEQTVDFLFGLDMLKRHQCCIDLHKNVLRLHEASGFHEV 304
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: A0A6A3UPT6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UPT6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.300e-25
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREV 288
            T+MS +CAERCG+   +D  FAG AVGVG A I+GR+H A ++IG+ +  CSFT+++   +D L GLD+L+ H+C I L KN +R H G    EV
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGHAVGVGTATIIGRVHMAPLKIGDEFYNCSFTILDQQGVDFLFGLDMLKRHQCCIDLGKNALRLHEGDRFHEV 328
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BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Match: K3WH90_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH90_GLOUD)

HSP 1 Score: 105 bits (263), Expect = 6.050e-25
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    4 TVMSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCSFTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREVIRL 297
            T+MS  CAERCG+   +D  FAG+AVGVG A+I+GR+H A+++IG+++  CSFT+++   +D L GLD+L+ H C I L KN +R   G  + EV  L
Sbjct:  220 TIMSSNCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMASLKIGDNFYNCSFTILDQQSVDFLFGLDMLKRHLCCIDLQKNVLRLQEGAISHEVAFL 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26539.7246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9H3_9PHAE8.270e-5086.17Asp_protease domain-containing protein n=2 Tax=Ect... [more]
D8LQW7_ECTSI1.080e-4684.00Peptidase aspartic, catalytic UBA-like n=1 Tax=Ect... [more]
A0A3F2S3S5_9STRA5.520e-2750.00Ubiquitin-like domain-containing protein n=3 Tax=P... [more]
A0A0W8DPB6_PHYNI1.200e-2651.02DDI1 2 protein n=2 Tax=Phytophthora TaxID=4783 Rep... [more]
A0A8K1C4K2_PYTOL2.600e-2650.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329SNU4_9STRA2.680e-2650.00Uncharacterized protein n=44 Tax=Phytophthora TaxI... [more]
F0W205_9STRA9.120e-2649.47DNA damageinducible protein 1 putative n=1 Tax=Alb... [more]
A0A024G644_9STRA1.340e-2549.47UBA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A6A3UPT6_9STRA5.300e-2549.47Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
K3WH90_GLOUD6.050e-2547.96Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26539contigH-paniculata_contig26539:524..1824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.6e-37
Seed eggNOG ortholog2880.D8LQW7
KEGG koko:K11885
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
Ec32 ortholog descriptionAspartic peptidase, DDI1-type
Ec32 orthologEc-07_001890.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Exons2
Model size300
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26539.7246.1prot_H-paniculata_contig26539.7246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26539 524..1815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.7378213-CDS-H-paniculata_contig26539:523..6921622929795.7378213-CDS-H-paniculata_contig26539:523..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26539 524..692 -
1691481014.3639565-CDS-H-paniculata_contig26539:523..6921691481014.3639565-CDS-H-paniculata_contig26539:523..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26539 524..692 -
1622929795.753388-CDS-H-paniculata_contig26539:1693..18151622929795.753388-CDS-H-paniculata_contig26539:1693..1815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26539 1694..1815 -
1691481014.377217-CDS-H-paniculata_contig26539:1693..18151691481014.377217-CDS-H-paniculata_contig26539:1693..1815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26539 1694..1815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.764904-UTR-H-paniculata_contig26539:1815..18241622929795.764904-UTR-H-paniculata_contig26539:1815..1824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26539 1816..1824 -
1691481014.386602-UTR-H-paniculata_contig26539:1815..18241691481014.386602-UTR-H-paniculata_contig26539:1815..1824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26539 1816..1824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26539.7246.1

>prot_H-paniculata_contig26539.7246.1 ID=prot_H-paniculata_contig26539.7246.1|Name=mRNA_H-paniculata_contig26539.7246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MSEACAERCGLTSRIDTSFAGRAVGVGFARILGRIHDANIRIGNSYLTCS
FTVIEHGEIDLLVGLDVLRAHRCDISLSKNKMRFHAGGGAREVIRL*
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mRNA from alignment at H-paniculata_contig26539:524..1824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26539.7246.1 ID=mRNA_H-paniculata_contig26539.7246.1|Name=mRNA_H-paniculata_contig26539.7246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1301bp|location=Sequence derived from alignment at H-paniculata_contig26539:524..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACGGTCATGTCGGAGGCGTGTGCGGAGCGTTGCGGGCTAACTTCGAG
GATAGACACAAGCTTCGCCGGCCGAGCGGTTGGTGTCGGATTCGCCCGGA
TATTGGGACGGATTCATGATGCCAATATACGGTGAGTATGCAAAATATGC
CGATGCTAAAAAAATCGTTGCGTTTTTTCTCACGTTGGCCACTTTTGTCC
AATCGCTCAGAGCGGCGGTCAGAGGATTACACTTTAAGTATCTGTTTTAG
TTACAGGAGGCATGCTGCAGCTTCTAACTGCGGAATGTGCCTACTGCCAA
TGGAGTGGTGTGTCTTTATTTCGAGCTATATATGTACTGGTGTTGCCACG
CGGTCTATCGTCTGATCGCGGGTCTGTGTAACCGGGCTAAAGTGATAAAA
ATATCAAATAATAATAGTGAAACGTAATATCCAAGGTTTACACGGGAGAA
ACAGACGGGCTAATATGTATCTTGCCGTATGGTAACAACACTTTGTGGAA
ATTGAAAATGAGGAAAAGCATCTGCAAGTAGGCCAGTCCACACACCCAAA
TCACACACATATACTTATAAATGCGAGCCATCTGACGTCTATTTAACCTA
TGAATAACCCAGATCATCCCGTCAGATCCAGGCACTCCGCAGATCTCAGA
TCCTAACGGTCTTTAGTATGGGTGAAACGGTCGAGCTACGGTACCGACGG
AAAATCCGACCGTGCGTGAACAAACCGACCGAAAACCCGAAAAGCGAGCG
AGCCAGGCCACCTCTCACGGAGGACCACCTCGCTTACTTCTTAGCCGAAC
ACGGAATTGAATTAAAGCCTCGACCTACTGGGGCATTGAGCTCACGAAAC
GTCACGCTTCACACGAATGATCTAATAATTTCTGGGGCTTAACCGCCGCT
GTTCTGATCATGTACGTCCTTGTCGGAAGTCAAATGTCCTGCATGATCAT
TTTGTCGAGCGACAAGCTAAATAAGGCCTACAGTTATATCGGGAGAACAT
GTTTTGCGTTTTAAAAGTATACCTTATTCACTGCAATACCTTTTTTGGGT
GTGCCTTACGTAGGGTCACCGACAAGGGATATACTTCGTTTTAAGGGAAA
CGGTCGCCCCTAAACGCCTGCTTTTTTGCCAGGATCGGAAATTCGTATCT
GACTTGCTCGTTCACTGTTATCGAACACGGGGAGATCGACCTGCTGGTGG
GATTGGATGTGCTGAGGGCGCATCGGTGCGACATCAGCCTATCCAAGAAC
AAGATGCGCTTTCACGCGGGGGGGGGAGCTAGAGAGGTGATTAGATTATA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig26539:524..1824-

>mRNA_H-paniculata_contig26539.7246.1 ID=mRNA_H-paniculata_contig26539.7246.1|Name=mRNA_H-paniculata_contig26539.7246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig26539:524..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGAGGCGTGTGCGGAGCGTTGCGGGCTAACTTCGAGGATAGACAC
AAGCTTCGCCGGCCGAGCGGTTGGTGTCGGATTCGCCCGGATATTGGGAC
GGATTCATGATGCCAATATACGATGTCGGAGGCGTGTGCGGAGCGTTGCG
GGCTAACTTCGAGGATAGACACAAGCTTCGCCGGCCGAGCGGTTGGTGTC
GGATTCGCCCGGATATTGGGACGGATTCATGATGCCAATATACGGATCGG
AAATTCGTATCTGACTTGCTCGTTCACTGTTATCGAACACGGGGAGATCG
ACCTGCTGGTGGGATTGGATGTGCTGAGGGCGCATCGGTGCGACATCAGC
CTATCCAAGAACAAGATGCGCTTTCACGCGGGGGGGGGAGCTAGAGAGGT
GATTAGATTATAAGATCGGAAATTCGTATCTGACTTGCTCGTTCACTGTT
ATCGAACACGGGGAGATCGACCTGCTGGTGGGATTGGATGTGCTGAGGGC
GCATCGGTGCGACATCAGCCTATCCAAGAACAAGATGCGCTTTCACGCGG
GGGGGGGAGCTAGAGAGGTGATTAGATTATAA
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