mRNA_H-paniculata_contig26469.7223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26469.7223.1
Unique NamemRNA_H-paniculata_contig26469.7223.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-8
Identity = 35/119 (29.41%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    4 EIWICDNGAMKHMIHDSDFLFDYEQCNG-HVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLQTGRVLSAERFGSLDVMRGS 357
            ++WI D+GA  H+    ++   YEQ +G +V +A+ +   + G+G + ++     + V   L  V  VP ++ +L+SL  F   G  ++     +RI   +  VL+A ++G+L V+RGS
Sbjct:  120 DVWILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGS 235
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI00142D866C (uncharacterized protein LOC117131983 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D866C)

HSP 1 Score: 57.8 bits (138), Expect = 2.750e-7
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
            I D+GA  HMI D++ + D E  +GHV +A+G+R+PI G G+L L F  DS+          F+P  + +LLS+ K +D G EY
Sbjct:  408 IIDSGASHHMIRDNNRIKDIEPAHGHVMIANGDRIPIRGFGKLKL-FDKDSKAF--------FMPEFTSNLLSVKK-SDNGGEY 481
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI0006AB1BB2 (uncharacterized protein LOC106350608 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1BB2)

HSP 1 Score: 57.8 bits (138), Expect = 2.950e-7
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
            + D+GA  HMI DS  + D E  NGHV +A+G+++PI G+G+L L F  DS+   M        P  + +LLS+ K+   G EY
Sbjct:  394 VVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL-FDEDSKAFYM--------PDFTSNLLSVKKYN--GGEY 466
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A078K3E9_BRANA (BnaUnng05000D protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078K3E9_BRANA)

HSP 1 Score: 56.6 bits (135), Expect = 6.890e-7
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGK 240
            I D+GA  HMI D++ + D E  +GHV +A+G+R+PI G+G+L L F  DS+   M        P  + +LLS+ K
Sbjct:  406 IIDSGASHHMISDNNLIKDIEPAHGHVMIANGDRIPIRGIGKLNL-FNKDSKAFYM--------PEFTSNLLSVKK 472
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 56.2 bits (134), Expect = 9.930e-7
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
            I D+GA  HMI D   + + E  +GHV +A+G+R+PI GVG L L F  DS+ + M        P  + +LLS+ K +D G EY
Sbjct:  400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFASNLLSV-KRSDNGGEY 473
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
            I D+GA  HMI D   + + E  +GHV +A+G+R+PI GVG L L F  DS+ + M        P  + +LLS+ K +D G EY
Sbjct:  415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 488
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
            I D+GA  HMI D   + + E  +GHV +A+G+R+PI GVG L L F  DS+ + M        P  + +LLS+ K +D G EY
Sbjct:  414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 487
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 55.8 bits (133), Expect = 1.310e-6
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLQTGRVL 315
            I D+GA  HMI D   + D ++  G V +A+G+R+PIEGVG+L L F  DS+   M        P  + +LLS+ K   D G +     + +   +L+TGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAFYM--------PQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
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BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A4D9AUL3_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AUL3_SALSN)

HSP 1 Score: 55.8 bits (133), Expect = 1.330e-6
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:    4 EIWICDNGAMKHMIHDSDFLFDYEQCN-GHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLQTGRVLSAERFGSLDVMRGS 357
            ++WI D+GA  H+    ++   YEQ + G+V +A+     + G+G + ++     + V   L  V  VP ++ +L+SL  F   G  ++     +RI   +  VL+A ++G+L V+RGS
Sbjct:  125 DVWILDSGASYHLCPHREYFTTYEQIDRGNVTMANSVVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLSTFDSRGFIFKGEGGVMRILKGSKVVLTALKWGTLYVLRGS 240
[Close]
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI0006A74443 (uncharacterized protein LOC106321044 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74443)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-6
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLS 231
            I D+GA  HMI DS  + D E  NGHV +A+G+++PI G+G+L L   +D E      ++  ++P  + +LLS
Sbjct:  394 IVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKE------SKAFYMPDFTSNLLS 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D8ZGL2_SALSN4.400e-829.41Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia sp... [more]
UPI00142D866C2.750e-741.67uncharacterized protein LOC117131983 n=1 Tax=Brass... [more]
UPI0006AB1BB22.950e-740.48uncharacterized protein LOC106350608 n=2 Tax=Brass... [more]
A0A078K3E9_BRANA6.890e-740.79BnaUnng05000D protein (Fragment) n=1 Tax=Brassica ... [more]
UPI000BBEF31C9.930e-741.67uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B1.020e-641.67uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC901.020e-641.67uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
A0A8D9D973_BRACM1.310e-636.89(field mustard) hypothetical protein (Fragment) n=... [more]
A0A4D9AUL3_SALSN1.330e-629.41Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
UPI0006A744431.360e-639.73uncharacterized protein LOC106321044 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26469contigH-paniculata_contig26469:937..1296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.1
Seed ortholog evalue8.3e-07
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.982033-CDS-H-paniculata_contig26469:936..12961622929791.982033-CDS-H-paniculata_contig26469:936..1296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26469 937..1296 +
1691481012.6781552-CDS-H-paniculata_contig26469:936..12961691481012.6781552-CDS-H-paniculata_contig26469:936..1296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26469 937..1296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26469.7223.1prot_H-paniculata_contig26469.7223.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26469 937..1296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26469.7223.1

>prot_H-paniculata_contig26469.7223.1 ID=prot_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MEIWICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQ
FRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLQ
TGRVLSAERFGSLDVMRGSR
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mRNA from alignment at H-paniculata_contig26469:937..1296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26469.7223.1 ID=mRNA_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig26469:937..1296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAATGAAACACATGATCCATGA
TTCAGATTTTCTTTTTGATTACGAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTTCCGATCGAAGGAGTTGGCAGGCTGTTCCTTCAA
TTTCGATATGACTCCGAGGTTGTATTGATGAACTTAACTCAGGTTGCATT
CGTACCACTACTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGACT
TTGGTCACGAATATAGGTGTTCCCGCGAAGGGCTCAGAATTAACCTTCAA
ACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCG
AGGGTCGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26469:937..1296+

>mRNA_H-paniculata_contig26469.7223.1 ID=mRNA_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig26469:937..1296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATGTGATAATGGTGCAATGAAACACATGATCCATGA
TTCAGATTTTCTTTTTGATTACGAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTTCCGATCGAAGGAGTTGGCAGGCTGTTCCTTCAA
TTTCGATATGACTCCGAGGTTGTATTGATGAACTTAACTCAGGTTGCATT
CGTACCACTACTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGACT
TTGGTCACGAATATAGGTGTTCCCGCGAAGGGCTCAGAATTAACCTTCAA
ACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCG
AGGGTCGCGAATGGAGATCTGGATATGTGATAATGGTGCAATGAAACACA
TGATCCATGATTCAGATTTTCTTTTTGATTACGAGCAATGTAATGGGCAT
GTACGCCTTGCAGATGGTAACCGTCTTCCGATCGAAGGAGTTGGCAGGCT
GTTCCTTCAATTTCGATATGACTCCGAGGTTGTATTGATGAACTTAACTC
AGGTTGCATTCGTACCACTACTCAGTCATCACCTCCTATCTCTCGGGAAA
TTCGCGGACTTTGGTCACGAATATAGGTGTTCCCGCGAAGGGCTCAGAAT
TAACCTTCAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTTG
ACGTGATGCGAGGGTCGCGA
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