mRNA_H-paniculata_contig2640.7211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2640.7211.1
Unique NamemRNA_H-paniculata_contig2640.7211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: D7FUW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.550e-13
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNTEAHNLQL+ETL+R+E+ELN+KDRLI+KYQ EIRQR DEIEKK+
Sbjct:  450 LNTEAHNLQLKETLRRSEEELNSKDRLIEKYQTEIRQRGDEIEKKM 495
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S3XSM0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM0_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 5.240e-11
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNTEAHN+QLR+TL +  DEL AKD LI+KYQ+EIRQRNDEIEKK+
Sbjct:  340 LNTEAHNVQLRDTLGKLLDELKAKDALIEKYQMEIRQRNDEIEKKM 385
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S1XYJ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYJ4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.510e-10
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNTEAH +QLR TL +  D+L AKDRLI+KYQLEIRQRNDEIEKK+
Sbjct:  456 LNTEAHAVQLRGTLSKILDDLKAKDRLIEKYQLEIRQRNDEIEKKM 501
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S2C2G7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.060e-9
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNT+AHN+QLRE +++   EL  KD+LI+KYQLEIRQRNDEIEKK+
Sbjct:  460 LNTDAHNVQLREMMEKQLTELKDKDKLIEKYQLEIRQRNDEIEKKM 505
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S2SRR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRR0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-8
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNT+AHNLQL+E L +   +L  KD+LI+KYQLEIRQRNDEIEKK+
Sbjct:  169 LNTQAHNLQLKEMLDKQVADLAEKDKLIEKYQLEIRQRNDEIEKKM 214
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S2B495_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B495_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-8
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKV 138
            LNT+AHN QL+E L +  ++L  KD+LI+KYQLEIRQR+DEIEKK+
Sbjct:  175 LNTDAHNTQLKEVLDKHTEDLKEKDKLIEKYQLEIRQRSDEIEKKM 220
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A699ZGD9_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZGD9_HAELA)

HSP 1 Score: 57.0 bits (136), Expect = 6.840e-8
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKK------VSPRKIRFVGDRQMNRQTPL 195
            LNTEAHN +L ETLK  ++ELN K   I+KY+LEI++RNDEIEKK      ++ R  R VG+ +     PL
Sbjct:  364 LNTEAHNARLAETLKMLDEELNDKAGAIEKYELEIKRRNDEIEKKTREIDLLNRRLERMVGNMEDEETGPL 434
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S0S456_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S456_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 9.450e-8
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKVSP-----RKI-RFVGDRQMNRQTPL 195
            LNTE+HN +L+ETLK  ++EL+ K + I+KY+LEI++RNDEIEKK        RK+ R VG   +    PL
Sbjct:  147 LNTESHNARLKETLKLLDEELDDKSKAIEKYELEIKRRNDEIEKKTREIDLLNRKLERMVGGMSIEETGPL 217
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BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A6A0A2Q6_HAELA (Flagellar-associated protein 172 n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A2Q6_HAELA)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKK------VSPRKIRFVGDRQMNRQTPL 195
            LNTEAHN +L ETLK  ++ELN K   I+KY+LEI++RNDEIEKK      ++ R  R VG+ +     PL
Sbjct:  198 LNTEAHNARLVETLKMLDEELNDKAGAIEKYELEIKRRNDEIEKKTREIDLLNRRLERMVGNMEDEETGPL 268
[Close]
BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Match: A0A7S3R2W2_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R2W2_DUNTE)

HSP 1 Score: 54.7 bits (130), Expect = 4.560e-7
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKK 135
            LNTEAHN +L ETLK  +DEL  K   I+KY+LEI++RNDEIE+K
Sbjct:  435 LNTEAHNTRLAETLKLLDDELREKSMAIEKYELEIKRRNDEIERK 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2640.7211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FUW3_ECTSI3.550e-1380.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XSM0_HETAK5.240e-1176.09Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1XYJ4_9STRA2.510e-1076.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C2G7_9STRA3.060e-969.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SRR0_9STRA1.060e-869.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B495_9STRA2.710e-865.22Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A699ZGD9_HAELA6.840e-850.70Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A7S0S456_9CHLO9.450e-849.30Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A6A0A2Q6_HAELA1.290e-750.70Flagellar-associated protein 172 n=1 Tax=Haematoco... [more]
A0A7S3R2W2_DUNTE4.560e-764.44Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2640contigH-paniculata_contig2640:17817..18013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue8.8e-11
Seed eggNOG ortholog2880.D7FUW3
Preferred nameCCDC40
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051641,GO:0051674,GO:0055123,GO:0060271,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072001,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.epithelial cilium movement involved in determination of left/right asymmetry
EggNOG OGs2CJ7Q@1,2QQ91@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.6468265-CDS-H-paniculata_contig2640:17816..180111622929790.6468265-CDS-H-paniculata_contig2640:17816..18011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2640 17817..18011 +
1691481012.082391-CDS-H-paniculata_contig2640:17816..180111691481012.082391-CDS-H-paniculata_contig2640:17816..18011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2640 17817..18011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2640.7211.1prot_H-paniculata_contig2640.7211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2640 17817..18011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2640.7211.1

>prot_H-paniculata_contig2640.7211.1 ID=prot_H-paniculata_contig2640.7211.1|Name=mRNA_H-paniculata_contig2640.7211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
LNTEAHNLQLRETLKRTEDELNAKDRLIDKYQLEIRQRNDEIEKKVSPRK
IRFVGDRQMNRQTPL
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mRNA from alignment at H-paniculata_contig2640:17817..18013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2640.7211.1 ID=mRNA_H-paniculata_contig2640.7211.1|Name=mRNA_H-paniculata_contig2640.7211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=197bp|location=Sequence derived from alignment at H-paniculata_contig2640:17817..18013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTAACACCGAGGCCCACAACTTGCAGCTGCGCGAGACTCTGAAGAGGAC
CGAGGATGAGCTCAACGCAAAGGACCGACTGATCGATAAATACCAGCTGG
AGATTCGGCAGCGCAACGACGAAATTGAGAAGAAGGTTAGTCCGCGGAAA
ATCAGGTTCGTCGGCGACAGACAGATGAATAGGCAAACACCTCTTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2640:17817..18013+

>mRNA_H-paniculata_contig2640.7211.1 ID=mRNA_H-paniculata_contig2640.7211.1|Name=mRNA_H-paniculata_contig2640.7211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig2640:17817..18013+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTAACACCGAGGCCCACAACTTGCAGCTGCGCGAGACTCTGAAGAGGAC
CGAGGATGAGCTCAACGCAAAGGACCGACTGATCGATAAATACCAGCTGG
AGATTCGGCAGCGCAACGACGAAATTGAGAAGAAGGTTAGTCCGCGGAAA
ATCAGGTTCGTCGGCGACAGACAGATGAATAGGCAAACACCTCTTCTTAA
CACCGAGGCCCACAACTTGCAGCTGCGCGAGACTCTGAAGAGGACCGAGG
ATGAGCTCAACGCAAAGGACCGACTGATCGATAAATACCAGCTGGAGATT
CGGCAGCGCAACGACGAAATTGAGAAGAAGGTTAGTCCGCGGAAAATCAG
GTTCGTCGGCGACAGACAGATGAATAGGCAAACACCTCTT
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