mRNA_H-paniculata_contig2630.7181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2630.7181.1
Unique NamemRNA_H-paniculata_contig2630.7181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2630.7181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2630contigH-paniculata_contig2630:1636..4479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size901
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2630.7181.1prot_H-paniculata_contig2630.7181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2630 3763..4479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.9311306-UTR-H-paniculata_contig2630:1635..17591622929786.9311306-UTR-H-paniculata_contig2630:1635..1759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 1636..1759 +
1691481010.4527812-UTR-H-paniculata_contig2630:1635..17591691481010.4527812-UTR-H-paniculata_contig2630:1635..1759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 1636..1759 +
1622929786.97557-UTR-H-paniculata_contig2630:3704..37621622929786.97557-UTR-H-paniculata_contig2630:3704..3762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 3705..3762 +
1691481010.462879-UTR-H-paniculata_contig2630:3704..37621691481010.462879-UTR-H-paniculata_contig2630:3704..3762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2630 3705..3762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.9901524-CDS-H-paniculata_contig2630:3762..44791622929786.9901524-CDS-H-paniculata_contig2630:3762..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 3763..4479 +
1691481010.4719832-CDS-H-paniculata_contig2630:3762..44791691481010.4719832-CDS-H-paniculata_contig2630:3762..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2630 3763..4479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2630.7181.1

>prot_H-paniculata_contig2630.7181.1 ID=prot_H-paniculata_contig2630.7181.1|Name=mRNA_H-paniculata_contig2630.7181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MPSRSRSPSRSRPPKRNRNSYSKSRSRSRSTSNSLSLSLSRSRSHSESRS
ESRSESRSRSDSRDHHSSRRRSLTPERRRGDSRGGGSGGYRTPVKSTSTS
RHRTGTPNGRDRSAERRSSGGRREERRGSSRDGGRVGDYGRSSGDRGRDS
RDERGNRIRGVLASSSSNRDRGRDRDRSIDRRDSRDSSRDRPRRGHYKGD
KEERSGNRKEWERDRDKDRDRDRGDKGGRNRDRGDRNYE
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mRNA from alignment at H-paniculata_contig2630:1636..4479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2630.7181.1 ID=mRNA_H-paniculata_contig2630.7181.1|Name=mRNA_H-paniculata_contig2630.7181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig2630:1636..4479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGTGGGCAGGCGGGCCCAGACCGGGTGTAGAGTTTGGAGAGCGAGGG
AATCTGAGCCCGGGATTCAGGTGGAGGGGAGCAGGGGGTTCATCGATAAG
CGGGAGGGGAAATAAGGCTCTGAGGTTAGTCTTTGGTAAATCCTGTCGCA
GGCTCTCTATCGCCGAAAAGGCTGAGGGGGTGTGTCTGTCTCCGAGTATG
GCAGCTCAAAACACTGGTCATCATATATTGAGCCATAATTTTGGTCTACA
GGAGGAAGGACGCAAGGGTGGCGAGGCAGGATAAAAGCGTTTCTTCTTCG
CGTCAGGAGTAGTCCGGTTTTGGGCCATCGGCGTGTGCGTTGGCATGGCT
CTAGCGTTGTTGGGGTTATTTTGGGGACTGTTGTACGTGTTTCTTTGTGA
TCTCGAAAAAACAGGAAACGCGTATCATAAAACAGTTCAGTTTGTGTGCT
GACTGTCACCCCACTGTGTTCTGTCGACAAGAGAAGTCACAGCAGTTACT
GCTGACTGACTTGACCGTCTGTATCGCCGAATTTGGTGTCCGCATCTCGT
GCTGCAAAGTAGTTGATGCAGTCCATATCAATAGTACAGCATGAAGTGTA
CAGAAGCGGCACCGCCTTCGTCAAGCCTGTGGAATAGTAACTTTGGCAGC
TCAACTCGCTTGCGCAAATACATGCACATCCGGCTCCGTTTTTGAGACTC
TTCGAATCTGCCGCGCAACTGACCTTAGAGATAACAGTTACTCGCAGAAA
TATGCCTCCATGTGTTGAGGTTGAACAAGCTTTCAGTTACATACGTTTGT
CTTGCCAGCGTTGGCATATTTCAAGGTGAAATACGTGTATCATGCAACTG
TCTGGTCAGTTCGTGGGTTTGCTACTTTTGTCTGCCAAGACAGTTGTGTG
GCGGGGTAGGGGGCAGGTAGGCGTGTATTGATGGCGATGGGTACGTGTGT
GTGATCGGCATTTTTGGTGAATTGAATTTCAAATCTGATATAACCCGACG
AACTCACGCCGCGACCCCGCCCAACCCATCAACCTAGGGGCGGCGTAGTG
CCGCAGGAGAAGAAGGTAACGGGGACGGAAGAAAAAGCACGAACCATACA
TACAGCATAGGTTGCGCTACGAGTATAGCACCATGCGGAGCCAACAGTAT
GGTCTGTAGGCGAGCTTCATGCACGCGGCAGCATCAAGAATTGATAATCA
GCACAGTCAGATGTACGGTAACAGGAGTAATAACCACAAAACAGTACCGT
GACGGCACAGGCTGTACTGTCTGCGGTCTATAGAACGACGCAGGAACACA
AAGGAAGGTTGAATTAGCTGCGTATAGCAAGTGACAACTGTCTGTACTCC
ATCAATAATCAGTTTGAGATTATTTTTTAAGTATCGTGTACAAACTCAAG
GTCAAAGTAAGCAAGGCAGTTTGCGGAGAGAAGTTGGTCGTCTGTCGCCC
CGTCTCTCAGTTGTCTGCGCTGATGTGTGTGTATCTACTGTGCTCTGTGT
TGGTCTGTCTTGTTGTGGTCTGTTACAAGTTCCCAGTGCTCACGACTCAA
GGCACGTTTTCATATAGGCGAACATGGTCAAAATCTCGGTCTTTGGTCAT
ACGAAGAAATATTTGTGGGAGGTGTTGGGATTTGATGCGCACACCGTCAT
TTTCCATTATTGATAGTAAACCTCCTAGTTATTATGGAGAGCCAATAGAG
TGTACTGCATTATATGCACCCACAGCACCCACCGACCCACCCAGGCTTCG
CCGTGCACCAATCCAACCCTCCAACATCACTAAAGGCTATTTGGTGAATG
GTAAACACTTTTTGCCGGGAAACGTTGGACGTGTACTGTGCAATCAAGCA
AACTATACAGAGTGTTGTATACAATTTATAGTCTTCGCACATCGATTGAT
CGGTGCCGACACCCTACAGACAATACTCGTATGTACGATGGTCATCAGTC
AAGAGAATTGCACAACGACACAAATAACAACGAAGGCGAGCCCAGAAAAG
TTCCCAAACACGCCTTCCCTCTTAGTATGGACTTTCGATGCATATTTGTC
CCTCGCGCCCCTTCTACAGCAGAGAGCTCTAGGGTGGCGCTGTTGTCCCT
CCCTCTGGAGGGGCGCTATCGCTCGGCATGCCTTCTCGCTCCAGGAGCCC
GAGCAGGAGCCGACCTCCGAAACGCAACCGCAATAGCTACAGCAAAAGTA
GGAGTCGCAGTCGCAGTACAAGCAACAGCCTCAGCCTCAGCCTTAGCCGC
AGCCGCAGCCATAGCGAGAGTCGCAGCGAGAGTCGCAGCGAGAGTCGGAG
CCGGAGCGACAGCCGCGATCACCACAGCAGCCGTCGCAGGTCCCTCACCC
CCGAGCGCCGACGAGGGGATAGCAGAGGCGGAGGCAGCGGCGGCTACCGC
ACCCCGGTAAAATCAACGTCAACATCACGCCATCGCACCGGCACTCCAAA
CGGCCGCGATCGGTCAGCGGAACGGCGCTCCTCCGGAGGAAGGCGAGAGG
AAAGAAGAGGCAGCTCTAGGGACGGTGGGCGGGTCGGAGACTATGGTCGA
AGTTCAGGTGACAGAGGACGAGACTCGCGCGACGAACGAGGAAACAGGAT
CCGAGGGGTGCTTGCGTCGAGCAGCAGCAACAGAGACCGAGGGCGAGATA
GGGACCGTAGCATTGACCGGAGGGACAGTAGGGACAGCAGCCGTGACCGC
CCCCGCCGAGGGCACTATAAGGGAGATAAGGAGGAACGATCGGGAAACAG
GAAAGAGTGGGAGAGGGATCGCGACAAAGACCGAGATCGGGATCGAGGAG
ACAAAGGAGGGCGGAATCGAGACAGGGGAGACCGAAATTATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2630:1636..4479+

>mRNA_H-paniculata_contig2630.7181.1 ID=mRNA_H-paniculata_contig2630.7181.1|Name=mRNA_H-paniculata_contig2630.7181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig2630:1636..4479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCTCGCTCCAGGAGCCCGAGCAGGAGCCGACCTCCGAAACGCAA
CCGCAATAGCTACAGCAAAAGTAGGAGTCGCAGTCGCAGTACAAGCAACA
GCCTCAGCCTCAGCCTTAGCCGCAGCCGCAGCCATAGCGAGAGTCGCAGC
GAGAGTCGCAGCGAGAGTCGGAGCCGGAGCGACAGCCGCGATCACCACAG
CAGCCGTCGCAGGTCCCTCACCCCCGAGCGCCGACGAGGGGATAGCAGAG
GCGGAGGCAGCGGCGGCTACCGCACCCCGGTAAAATCAACGTCAACATCA
CGCCATCGCACCGGCACTCCAAACGGCCGCGATCGGTCAGCGGAACGGCG
CTCCTCCGGAGGAAGGCGAGAGGAAAGAAGAGGCAGCTCTAGGGACGGTG
GGCGGGTCGGAGACTATGGTCGAAGTTCAGGTGACAGAGGACGAGACTCG
CGCGACGAACGAGGAAACAGGATCCGAGGGGTGCTTGCGTCGAGCAGCAG
CAACAGAGACCGAGGGCGAGATAGGGACCGTAGCATTGACCGGAGGGACA
GTAGGGACAGCAGCCGTGACCGCCCCCGCCGAGGGCACTATAAGGGAGAT
AAGGAGGAACGATCGGGAAACAGGAAAGAGTGGGAGAGGGATCGCGACAA
AGACCGAGATCGGGATCGAGGAGACAAAGGAGGGCGGAATCGAGACAGGG
GAGACCGAAATTATGAGATGCCTTCTCGCTCCAGGAGCCCGAGCAGGAGC
CGACCTCCGAAACGCAACCGCAATAGCTACAGCAAAAGTAGGAGTCGCAG
TCGCAGTACAAGCAACAGCCTCAGCCTCAGCCTTAGCCGCAGCCGCAGCC
ATAGCGAGAGTCGCAGCGAGAGTCGCAGCGAGAGTCGGAGCCGGAGCGAC
AGCCGCGATCACCACAGCAGCCGTCGCAGGTCCCTCACCCCCGAGCGCCG
ACGAGGGGATAGCAGAGGCGGAGGCAGCGGCGGCTACCGCACCCCGGTAA
AATCAACGTCAACATCACGCCATCGCACCGGCACTCCAAACGGCCGCGAT
CGGTCAGCGGAACGGCGCTCCTCCGGAGGAAGGCGAGAGGAAAGAAGAGG
CAGCTCTAGGGACGGTGGGCGGGTCGGAGACTATGGTCGAAGTTCAGGTG
ACAGAGGACGAGACTCGCGCGACGAACGAGGAAACAGGATCCGAGGGGTG
CTTGCGTCGAGCAGCAGCAACAGAGACCGAGGGCGAGATAGGGACCGTAG
CATTGACCGGAGGGACAGTAGGGACAGCAGCCGTGACCGCCCCCGCCGAG
GGCACTATAAGGGAGATAAGGAGGAACGATCGGGAAACAGGAAAGAGTGG
GAGAGGGATCGCGACAAAGACCGAGATCGGGATCGAGGAGACAAAGGAGG
GCGGAATCGAGACAGGGGAGACCGAAATTATGAG
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