mRNA_H-paniculata_contig26296.7179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig26296.7179.1
Unique Name	mRNA_H-paniculata_contig26296.7179.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: D8LGK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 5.200e-50
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVPWPC 282
            R  R+WFNI + CFS+N VI+ YL VWLP+V+ I+VSWN+YSPRAIPTAT VGLICA+ALN+SLWNVWGFLTPLILFAVF+GCLFSLHFVPWPC
Sbjct:  146 RVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A836CLB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.130e-44
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVPWPC 282
            R +R WFN+A  CF++N VIMGYL +WLP V+R+   WN+Y PRAIP ATAVG+IC V+LN++LW+VWGFLTPLIL  VF+GCLF LHFVPWPC
Sbjct:   66 RVKRPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A6G0XCK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.570e-32
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  R++FNI + CF IN  I  YLAVWLPYVK+I + W++Y PR IPTAT VGL+CA+ L I LW VWGF TP ILF +F+G L + HF+P
Sbjct:   80 RVHRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A7S3JQ39_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQ39_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.850e-31
Identity = 54/90 (60.00%), Postives = 62/90 (68.89%), Query Frame = 1

Query:   10 RVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVPWP 279
            R W NIA   F+IN V+  YL +WLPYV RI + WN+Y PR IPT TAVGLICA +L   LW VWG LTPLIL   F+ C+  LHFVP P
Sbjct:   66 RFWLNIAAATFAINAVLCSYLTLWLPYVARIDIEWNIYCPRIIPTMTAVGLICAFSLIRGLWPVWGLLTPLILAITFMACIMLLHFVPAP 155

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A485KKF8_9STRA (Aste57867_8441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.230e-30
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  RV+FNI + CF IN  I  YLAVWLPY+K+I + W++Y PR +PTATAVGL+CA+   I LW VWG  TP ILF +F+G L + HF+P
Sbjct:   85 RVHRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A024UNE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.230e-30
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  RV+FN+ + CF IN  I  YLA+WLPYVK+I + WN+Y PR +PTAT VG++CA+   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   85 RVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: W4FWN3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.680e-30
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  RV+FNI + CF IN  I  YL++WLPYVK+I + W++Y PR +PTAT VG++CA+   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   87 RVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A1W0A176_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.080e-29
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  R++FNI + CF +N  I  YLAVWLPYVK+I + W++Y PR IPTAT +G++CA+   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   73 RVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A1V9ZHJ8_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHJ8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.130e-27
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  R+ FN+ + CF IN  I  YLA+WLPYVK+I + W++Y PR IPTAT  GL CA+     LW +WGF TP ILF +F+G L + HF+P
Sbjct:   80 RVHRLSFNVGLVCFGINCCITAYLAIWLPYVKKIDLEWSVYCPRMIPTATVAGLGCALGFIFGLWPIWGFFTPGILFVLFLGTLMTAHFLP 170

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BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Match: A0A067CEE4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEE4_SAPPC)

HSP 1 Score: 104 bits (259), Expect = 2.460e-26
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1

Query:    1 RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTATAVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVP 273
            R  R++FNI V C  +N  I  YLA+WLPYV+++ + W++Y PR IPTAT VGL+ A+ L + LW VWG  TP ILF +F+G L + HF+P
Sbjct:   78 RVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGALGLILGLWPVWGLFTPGILFVLFLGTLMTAHFLP 168

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig26296.7179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LGK7_ECTSI	5.200e-50	78.72	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CLB2_9STRA	1.130e-44	68.09	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6G0XCK9_9STRA	6.570e-32	59.34	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A7S3JQ39_9STRA	6.850e-31	60.00	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A485KKF8_9STRA	1.230e-30	57.14	Aste57867_8441 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A024UNE8_9STRA	1.230e-30	54.95	Uncharacterized protein n=2 Tax=Aphanomyces invada...	[more]
W4FWN3_9STRA	3.680e-30	53.85	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
A0A1W0A176_9STRA	4.080e-29	53.85	Transmembrane protein n=1 Tax=Thraustotheca clavat...	[more]
A0A1V9ZHJ8_9STRA	1.130e-27	52.75	Transmembrane protein n=1 Tax=Achlya hypogyna TaxI...	[more]
A0A067CEE4_SAPPC	2.460e-26	51.65	Uncharacterized protein n=3 Tax=Saprolegnia TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig26296	contig	H-paniculata_contig26296:184..1203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	167.2
Seed ortholog evalue	3.8e-39
Seed eggNOG ortholog	2880.D8LGK7
Hectar predicted targeting category	signal anchor
EggNOG OGs	2BN0F@1,2S1N7@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	285
Cds size	285
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929785.846434-CDS-H-paniculata_contig26296:183..359	1622929785.846434-CDS-H-paniculata_contig26296:183..359	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig26296 184..359 +
1691481009.829096-CDS-H-paniculata_contig26296:183..359	1691481009.829096-CDS-H-paniculata_contig26296:183..359	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig26296 184..359 +
1622929785.8639956-CDS-H-paniculata_contig26296:1094..1203	1622929785.8639956-CDS-H-paniculata_contig26296:1094..1203	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig26296 1095..1203 +
1691481009.852016-CDS-H-paniculata_contig26296:1094..1203	1691481009.852016-CDS-H-paniculata_contig26296:1094..1203	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig26296 1095..1203 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig26296.7179.1	prot_H-paniculata_contig26296.7179.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig26296 184..1203 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig26296:184..1203+
coding sequence from alignment at H-paniculata_contig26296:184..1203+

protein sequence of mRNA_H-paniculata_contig26296.7179.1

>prot_H-paniculata_contig26296.7179.1 ID=prot_H-paniculata_contig26296.7179.1|Name=mRNA_H-paniculata_contig26296.7179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
RSRRVWFNIAVTCFSINVVIMGYLAVWLPYVKRIKVSWNLYSPRAIPTAT
AVGLICAVALNISLWNVWGFLTPLILFAVFVGCLFSLHFVPWPC*

mRNA from alignment at H-paniculata_contig26296:184..1203+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig26296.7179.1 ID=mRNA_H-paniculata_contig26296.7179.1|Name=mRNA_H-paniculata_contig26296.7179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig26296:184..1203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCTCGCAGGGTTTGGTTCAACATTGCGGTGACTTGCTTCAGCATCAA
CGTTGTTATCATGGGATACTTAGCTGTCTGGCTACCGTACGTGAAGAGAA
TCAAGGTGTCGTGGAATCTGTACAGTCCCCGAGCGATACCCACGGCTACA
GCGGTCGGGCTAATCTGCGCCGTGGCGTGAGTGGAGTATACACATTTTTT
TGTTTGTTTTGCATGGCAAAAAGCGTCTCAATAGGAAATAAATAGGCTAG
CGCCTGGCTAGATACACCCACCCAGCCTTGGCAGGTCCCCTTCTGTCTTC
CCAGCCCGCGTTTTTTTGTTTTTTTTTTCAAGGGGACGAGAAGGGAGGGT
TTGTCCATAATTGGCATTCATTTGTGTGGCGCGTATTTTTTAGACATTAG
GCGTTGGGAGGGGGATAAGGATGAAGTAACACCTCCGGGGGGGTGCAAGA
TAAGCTCGAATCAACCGTTGTTGTTCTTCCGACGGAGCGCAAAAAACGAA
GGGATCAACTAATGATTTTCTCAGACAGGACAAGACATCACTCCGTTGCC
TGTATATTTGCCTCGAGGGCCATTTTCCAGCGTATTAATGTATATGTATA
TGTAGTAGTATATGTGTATACTGTATATGTTTCTCCATTTCTTGCGTAAT
TGACGTATCCTTTGTGACGTTATTTTCCAATTTCTGCGGGAGGGAGAGAA
AAGCCTAGAGAATCATATAATGAATACACAACTCACGAACGCTTGCTTGT
GGGTTTGCTCCAACGGTGAAGACGTGCATGCCCATGCCTCTCTCGGTGTG
GTCACACTTTTCGGACACACTTCCTTGCTCGTTTTCCTTCCTCTCTGCTT
CACTCTGTCTGTTTTGTTTCTTGTTTTCTTCCGTATGGTCGTTGCGTTAA
TTCCTCTGCAGGCTAAACATTTCCTTATGGAACGTATGGGGATTCCTTAC
GCCGCTCATCTTGTTCGCGGTGTTTGTCGGATGCCTGTTCAGCCTACACT
TCGTACCGTGGCCCTGTTGA

Coding sequence (CDS) from alignment at H-paniculata_contig26296:184..1203+

>mRNA_H-paniculata_contig26296.7179.1 ID=mRNA_H-paniculata_contig26296.7179.1|Name=mRNA_H-paniculata_contig26296.7179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig26296:184..1203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCTCGCAGGGTTTGGTTCAACATTGCGGTGACTTGCTTCAGCATCAA
CGTTGTTATCATGGGATACTTAGCTGTCTGGCTACCGTACGTGAAGAGAA
TCAAGGTGTCGTGGAATCTGTACAGTCCCCGAGCGATACCCACGGCTACA
GCGGTCGGGCTAATCTGCGCCGTGGCCGTTCTCGCAGGGTTTGGTTCAAC
ATTGCGGTGACTTGCTTCAGCATCAACGTTGTTATCATGGGATACTTAGC
TGTCTGGCTACCGTACGTGAAGAGAATCAAGGTGTCGTGGAATCTGTACA
GTCCCCGAGCGATACCCACGGCTACAGCGGTCGGGCTAATCTGCGCCGTG
GCGCTAAACATTTCCTTATGGAACGTATGGGGATTCCTTACGCCGCTCAT
CTTGTTCGCGGTGTTTGTCGGATGCCTGTTCAGCCTACACTTCGTACCGT
GGCCCTGTTGAGCTAAACATTTCCTTATGGAACGTATGGGGATTCCTTAC
GCCGCTCATCTTGTTCGCGGTGTTTGTCGGATGCCTGTTCAGCCTACACT
TCGTACCGTGGCCCTGTTGA