mRNA_H-paniculata_contig26277.7173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26277.7173.1
Unique NamemRNA_H-paniculata_contig26277.7173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26277.7173.1 vs. uniprot
Match: D7FWG2_ECTSI (SAM-dependent methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG2_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 8.160e-52
Identity = 115/218 (52.75%), Postives = 140/218 (64.22%), Query Frame = 1 
Query:    1 GVKTMIQILSEGGRDSSSSSSVGKKSVDKSGSALLTRSALSDLKIDRLVLQPMDARLEYVHNLRMWLRENGWRITQESIASILGKGGRRAFLTLRADSTARHRPPQSKVTTTILS--DWPGG--HQEGADWLGEFLPARATTDSGQLLPHGNLHTRRGVGGREEALTFLAYLKHQRNWLRAIERARRSSSSSFTEEKQEGGRLGDGLDQAIAAVEESL 642
            GVKTMIQILS    DSS   +   +S    G       ALS L + RLVLQPMDARLEY+ +LR+WLRENGWRITQE I S LGKGGR AFLTLRAD T   R  +S       S  +WP G   +E +DWLG+FLP+R T DS QL   G     RG   R+EA TFLAYL+HQR+WL AIERAR  +S   T E+Q+   + +G+D  + AVE+++
Sbjct:  236 GVKTMIQILSTSTSDSSVDVTDSPESSHGRGVP-----ALSRLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADCTETLRSLKSDQGVPPFSGPEWPTGMPQEEWSDWLGDFLPSR-TMDSDQLRIGG-----RGTE-RQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAERQDSTAVSEGVDSVLRAVEDAI 441
[Close]
BLAST of mRNA_H-paniculata_contig26277.7173.1 vs. uniprot
Match: A0A6H5JHI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI9_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 8.010e-48
Identity = 105/217 (48.39%), Postives = 134/217 (61.75%), Query Frame = 1 
Query:    1 GVKTMIQILSEGGRDSSSSSSVGKKSVDKSGSALLTRSALSDLKIDRLVLQPMDARLEYVHNLRMWLRENGWRITQESIASILGKGGRRAFLTLRADSTARHRPPQSKVTTTILS-DWPGGHQEG--ADWLGEFLPARATTDSGQLLPHGNLHTRRGVGGREEALTFLAYLKHQRNWLRAIERARRSSSSSFTEEKQEGGRLGDGLDQAIAAVEESL 642
            GVKT+IQILS    DSS  ++  ++S    G+     SALS L + RLVLQPMDARLEY+ +LR+WLR NGWRI QE I S LGKGGR AFLTLRAD          +  +     +WP G  +G  +DWLG+FLP+R T DS QL   G          R+EA TFLAYL+HQR+WL AIERAR  +S   T E Q+   + + +   + AVE+++
Sbjct:  239 GVKTIIQILSASTSDSSGDAANSQESSHGRGA-----SALSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCMEMSSVKSDQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSR-TMDSNQLRDGGR------DTERQEAFTFLAYLRHQRDWLTAIERARSRTSRRVTAESQDSTAVSEAVGSVLRAVEDAI 443
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26277.7173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWG2_ECTSI8.160e-5252.75SAM-dependent methyltransferase n=1 Tax=Ectocarpus... [more]
A0A6H5JHI9_9PHAE8.010e-4848.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26277contigH-paniculata_contig26277:411..2041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size651
Cds size639
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26277.7173.1prot_H-paniculata_contig26277.7173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26277 423..2041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.3603637-UTR-H-paniculata_contig26277:410..4221622929785.3603637-UTR-H-paniculata_contig26277:410..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26277 411..422 +
1691481009.6410828-UTR-H-paniculata_contig26277:410..4221691481009.6410828-UTR-H-paniculata_contig26277:410..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26277 411..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.376276-CDS-H-paniculata_contig26277:422..6381622929785.376276-CDS-H-paniculata_contig26277:422..638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 423..638 +
1691481009.65915-CDS-H-paniculata_contig26277:422..6381691481009.65915-CDS-H-paniculata_contig26277:422..638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 423..638 +
1622929785.3994548-CDS-H-paniculata_contig26277:1582..19431622929785.3994548-CDS-H-paniculata_contig26277:1582..1943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 1583..1943 +
1691481009.671494-CDS-H-paniculata_contig26277:1582..19431691481009.671494-CDS-H-paniculata_contig26277:1582..1943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 1583..1943 +
1622929785.415991-CDS-H-paniculata_contig26277:1979..20411622929785.415991-CDS-H-paniculata_contig26277:1979..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 1980..2041 +
1691481009.6812897-CDS-H-paniculata_contig26277:1979..20411691481009.6812897-CDS-H-paniculata_contig26277:1979..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26277 1980..2041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26277.7173.1

>prot_H-paniculata_contig26277.7173.1 ID=prot_H-paniculata_contig26277.7173.1|Name=mRNA_H-paniculata_contig26277.7173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MIQILSEGGRDSSSSSSVGKKSVDKSGSALLTRSALSDLKIDRLVLQPMD
ARLEYVHNLRMWLRENGWRITQESIASILGKGGRRAFLTLRADSTARHRP
PQSKVTTTILSDWPGGHQEGADWLGEFLPARATTDSGQLLPHGNLHTRRG
VGGREEALTFLAYLKHQRNWLRAIERARRSSSSSFTEEKQEGGRLGDGLD
QAIAAVEESLSLA
back to top

mRNA from alignment at H-paniculata_contig26277:411..2041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26277.7173.1 ID=mRNA_H-paniculata_contig26277.7173.1|Name=mRNA_H-paniculata_contig26277.7173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-paniculata_contig26277:411..2041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGTCAAGACCATGATTCAAATCCTCAGTGAGGGAGGCCGAGACAGCAG
CAGCAGCAGCAGCGTCGGAAAAAAATCTGTAGACAAGAGCGGATCTGCTT
TGTTGACCCGGTCCGCCTTGTCCGATCTGAAGATCGACCGTCTGGTGCTG
CAGCCAATGGACGCCCGTTTGGAGTACGTTCATAATTTACGCATGTGGCT
CCGAGAAAATGGTTGGCGGATAACCCAGGTGTGTGTGCGCGCACATGAGT
GTATTTAGTAGAATAGCAGAACTACTTCTACGCCAGCGCAATCTGTGCGT
CATCATCAGGGCTCACGGGTCGCTGCCGCTCCGCAGGTCGGTATGCAGGC
AGGCACGGCGTCCATGAAAAATCATAATTCGTGATAGTTACTTGAATACA
TATCACAAAATTAGTGTTCGGGACTTTAACAGTTACTTGAGTGCAGATTT
GAATAATGTGTTGTGAATTTTCGTGGTTACTTGGGTACAGATTTGGAAAA
TCTTTTCTAATCTTTTTTAAGTTACTCGAGTGCATAGTTGACAATGTTGT
GAAATAACGTCCATGACTATTGCTTTGCGGCTTATTTTGTATTAGGTGCA
GATATGTGTTTCGCTCGCAGGAAATACTTCCGCGCGATGAAAAACTCACG
AAGGAAGCGTTTCTCAGCTGAGATGTGTCGACCAGTTGGGGAAAAATCCC
GTATCTCAACTACTCGATTTTTTCAATATATATATATATATATATATCAT
GTGCTTCGTGTGTATTCATGTTTGCTTCGCCAGTCGTAGCATACGCCTCT
TTGTAATTGTTCCTCGATTACGGCGGCATGTCGCTCGGTAGTGTCTGTAG
TGCTACCGTTGTCCCTCCGTCGAAATGACTAGTAACCCTCTGTGCACTCT
CGCCCTCACCCATTCCCCTATTGGTCATTTTCTAATTTTGCTGATAAGCA
TAAACAACTGAAGTTTGAAGTCAACTCCATCACCTCAACATGGGTATAAT
CGCAGACCGCCCCCCCCCCCCCCGCCTCCCGCTTTTTGTCTCTGCCTTTT
TTTATCTCTTTCTGACTTTCGCCTGCCTGACTCTCTCTTTCTCGATCTTC
TTGTCTCCTTCTTTCTCTGTCGCTGTCACTATCTCCGTCTCCGATATCCC
GACACACCCAAATGCCTTGAAGGAATCCATTGCATCAATTCTCGGAAAGG
GAGGTAGGCGTGCATTTTTAACCCTGCGGGCAGATTCAACCGCGCGCCAT
CGTCCACCCCAGTCAAAGGTCACCACCACCATTCTCTCCGATTGGCCGGG
GGGTCACCAGGAGGGCGCTGATTGGCTTGGCGAATTCCTACCAGCCCGCG
CGACGACGGACTCTGGACAATTACTGCCCCACGGAAACCTGCATACTCGC
CGCGGCGTGGGAGGTCGAGAGGAGGCGTTGACGTTCCTGGCGTACCTGAA
GCACCAGCGAAACTGGCTGCGGGCTATCGAGCGCGCGAGGCGCTCCTCTT
CGTCCTCATTCACGGAAGAAAAGCAAGAAGGTGGTGGCGGTGGTGGCAGT
GGTGGCAAGGGCATCCAAGGGCGCTTAGGCGACGGATTGGATCAGGCGAT
TGCCGCCGTGGAGGAATCCCTTTCGCTTGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26277:411..2041+

>mRNA_H-paniculata_contig26277.7173.1 ID=mRNA_H-paniculata_contig26277.7173.1|Name=mRNA_H-paniculata_contig26277.7173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig26277:411..2041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCAAATCCTCAGTGAGGGAGGCCGAGACAGCAGCAGCAGCAGCAG
CGTCGGAAAAAAATCTGTAGACAAGAGCGGATCTGCTTTGTTGACCCGGT
CCGCCTTGTCCGATCTGAAGATCGACCGTCTGGTGCTGCAGCCAATGGAC
GCCCGTTTGGAGTACGTTCATAATTTACGCATGTGGCTCCGAGAAAATGG
TTGGCGGATAACCCAGATGATTCAAATCCTCAGTGAGGGAGGCCGAGACA
GCAGCAGCAGCAGCAGCGTCGGAAAAAAATCTGTAGACAAGAGCGGATCT
GCTTTGTTGACCCGGTCCGCCTTGTCCGATCTGAAGATCGACCGTCTGGT
GCTGCAGCCAATGGACGCCCGTTTGGAGTACGTTCATAATTTACGCATGT
GGCTCCGAGAAAATGGTTGGCGGATAACCCAGGAATCCATTGCATCAATT
CTCGGAAAGGGAGGTAGGCGTGCATTTTTAACCCTGCGGGCAGATTCAAC
CGCGCGCCATCGTCCACCCCAGTCAAAGGTCACCACCACCATTCTCTCCG
ATTGGCCGGGGGGTCACCAGGAGGGCGCTGATTGGCTTGGCGAATTCCTA
CCAGCCCGCGCGACGACGGACTCTGGACAATTACTGCCCCACGGAAACCT
GCATACTCGCCGCGGCGTGGGAGGTCGAGAGGAGGCGTTGACGTTCCTGG
CGTACCTGAAGCACCAGCGAAACTGGCTGCGGGCTATCGAGCGCGCGAGG
CGCTCCTCTTCGTCCTCATTCACGGAAGAAAAGCAAGAAGGTGGAATCCA
TTGCATCAATTCTCGGAAAGGGAGGTAGGCGTGCATTTTTAACCCTGCGG
GCAGATTCAACCGCGCGCCATCGTCCACCCCAGTCAAAGGTCACCACCAC
CATTCTCTCCGATTGGCCGGGGGGTCACCAGGAGGGCGCTGATTGGCTTG
GCGAATTCCTACCAGCCCGCGCGACGACGGACTCTGGACAATTACTGCCC
CACGGAAACCTGCATACTCGCCGCGGCGTGGGAGGTCGAGAGGAGGCGTT
GACGTTCCTGGCGTACCTGAAGCACCAGCGAAACTGGCTGCGGGCTATCG
AGCGCGCGAGGCGCTCCTCTTCGTCCTCATTCACGGAAGAAAAGCAAGAA
GGTGGGCGCTTAGGCGACGGATTGGATCAGGCGATTGCCGCCGTGGAGGA
ATCCCTTTCGCTTGCGGGCGCTTAGGCGACGGATTGGATCAGGCGATTGC
CGCCGTGGAGGAATCCCTTTCGCTTGCG
back to top