prot_H-paniculata_contig261.7128.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig261.7128.1
Unique Nameprot_H-paniculata_contig261.7128.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1104
Homology
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BLAST of mRNA_H-paniculata_contig261.7128.1 vs. uniprot
Match: D7FIA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA5_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 5.190e-116
Identity = 311/610 (50.98%), Postives = 369/610 (60.49%), Query Frame = 0 
Query:  344 VIKQGRGSWQQALSLYEAFVELVVGQGRQVRAAGPISTPGEGVGSLNSVDSLPGAARRIHMLSESASALEEVCQAALEACCVGGQCERAVEVLNTLRAGGLGGQRSMAAYEKAIVLCGKGRAWEKVLLLMAEMRADDVALSPATFETTLQGCAATGSWSWARSLLR--SVPVNGKHGLSLSSRHYIYALSACAAVVDKPGGKETQGAVKFALALVQDLREAGWLEGKHGGDAYVLAMQTCVRAQDAWSALALLDSAQDDGIRQSAALSTAAMQALSGAGEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVEYPGDKETVTAAYHGAITACAECGQWEKATSLLHRMRQDSLVVVTTXXXXXXXXXXXXXXXXXXXXXXXGDMSIDAGRGRRNRFRSNLNQFGPDEMSYNHVMRAFAQEGRWRTVLDLMVSMCEESGLIPGVSXXXXXXXXXXXXXXXXQALRVLGEMRREGVRPTEFXXXXXXXXXXXXXXXXXXXXLMMDMKEQEDLVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXRNMPGGGGPNLVNYNIAIGACARAGEWELMLKEMDRMKWEDVTPTEMTFVTPLD 951
            V KQG G W+QAL LYE F+EL + Q R   +  P+     G   +  V  L    +++H L E A   E+VCQAALEAC +GGQ E A++VL+ LRAGG G + S AAY +AI +CGKGRAW+ VLLL+AEM +D++ ++ ATFET L+GCAATG+WSWA SLLR  S   NG +G+ L++ HY+ AL +CA VVDKPGG + Q A K AL L+QD+RE GWL G+ G D    AM+T   A+DAW ALALLD  QDDG+ +S  L T AMQA SGAGEW                                             L+ +P D+ TVTAA                      RMRQDSL VVT+                       GDMS+++                 DE SY  VMRAF +EGRWRTV+DLM S+ EE+GL+P VS XXXXXXXXXXXXXXX          +E VRPTEF XXXXXXXXXXXXXXXXXXX     KEQEDLVPD XXXXXXXXXXXXXXXXXXXXXXXXXX  M    GPNLV YNIAIG+CARA +W  ML+EMDRM+ ED+ P E TF  PLD
Sbjct:    4 VCKQGTG-WRQALPLYEGFLELALEQARATTS--PLEETQAGRADVVPVPLLR-QRQQLHRLKEVAPGWEDVCQAALEACNIGGQWEAALKVLSVLRAGGGGAELSEAAYTEAIEVCGKGRAWDMVLLLVAEMSSDEIPMTAATFETALKGCAATGAWSWALSLLRCMSTSTNGPNGIPLNAAHYLDALRSCAGVVDKPGGPKAQAAAKAALGLLQDVRENGWLVGQQGEDLVYCAMKTQAAARDAWGALALLD--QDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAXXXXXXXXXXXXXXXXXXXXXQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVES------------EHCSADETSYVLVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXQERVRPTEFTXXXXXXXXXXXXXXXXXXXXXXXXKEQEDLVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig261.7128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIA5_ECTSI5.190e-11650.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 224..377
e-value: 4.2E-16
score: 61.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 516..678
e-value: 2.5E-14
score: 55.5
coord: 402..515
e-value: 3.2E-11
score: 45.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1026..1097
e-value: 3.0E-9
score: 38.4
coord: 915..1025
e-value: 9.9E-20
score: 72.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 873..899
e-value: 0.0056
score: 16.8
coord: 910..937
e-value: 1.2
score: 9.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 945..975
e-value: 8.7E-4
score: 17.3
coord: 766..798
e-value: 1.6E-4
score: 19.6
coord: 836..870
e-value: 1.5E-4
score: 19.7
coord: 802..835
e-value: 1.2E-7
score: 29.5
coord: 1054..1082
e-value: 1.3E-4
score: 19.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 678..712
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 907..941
score: 9.624
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 870..900
score: 9.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 605..639
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 484..518
score: 5.919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 763..798
score: 9.646
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 570..604
score: 5.426
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 412..446
score: 5.842
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 942..976
score: 8.495
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1047..1081
score: 9.514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 298..332
score: 6.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 834..864
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 799..833
score: 12.595
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 640..670
score: 5.908
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 263..297
score: 7.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1012..1046
score: 6.566
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 227..262
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 449..483
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 977..1011
score: 8.024
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 714..744
score: 5.546
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 675..858
e-value: 1.8E-10
score: 40.5
coord: 949..1084
e-value: 5.9E-7
score: 29.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 906..1092
coord: 418..666
coord: 682..899
coord: 234..364
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..1103
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig261contigH-paniculata_contig261:26963..33369 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig261.7128.1mRNA_H-paniculata_contig261.7128.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig261 26442..33431 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig261.7128.1 ID=prot_H-paniculata_contig261.7128.1|Name=mRNA_H-paniculata_contig261.7128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1104bp
MAPHVQVTCLATMLFFENRTTSSALAFNICGASDLSRGSISCEHRRRRGS
RVRPRSSSHSATTPMLTATNNPEDRMRKMAVPPHKRSVRADIDTCSLNLA
LLNLSQPKLGQGESVGKGTDQVMGKGQGRGKGQGCQTYNKLPTSASGGVP
LQEGGVSNVLDEVQRLVLKGAIAEAIELLGGVARPNLATSAFEQQTALSK
SKAPVPTNIPNSRIDSESEAYNGESIVVDGFMAVLKGCSKRVMWKEARQI
LLRHMPTAGLRPPTEAWILAMDACAGAGGSEQAIYLLHEMSSRGVEINAA
VYQAAVKACACSGGMTRAIFLMKDAMKRGTPVTPAAVAETIIAVIKQGRG
SWQQALSLYEAFVELVVGQGRQVRAAGPISTPGEGVGSLNSVDSLPGAAR
RIHMLSESASALEEVCQAALEACCVGGQCERAVEVLNTLRAGGLGGQRSM
AAYEKAIVLCGKGRAWEKVLLLMAEMRADDVALSPATFETTLQGCAATGS
WSWARSLLRSVPVNGKHGLSLSSRHYIYALSACAAVVDKPGGKETQGAVK
FALALVQDLREAGWLEGKHGGDAYVLAMQTCVRAQDAWSALALLDSAQDD
GIRQSAALSTAAMQALSGAGEWRAALSILDHVLEEGEQPGGAMYVAAMAA
CARGGVVDLALELLERILVEYPGDKETVTAAYHGAITACAECGQWEKATS
LLHRMRQDSLVVVTTAEYNAAILACSRARQSFAALSLLGDMSIDAGRGRR
NRFRSNLNQFGPDEMSYNHVMRAFAQEGRWRTVLDLMVSMCEESGLIPGV
SSYNLVVEALAKAGEWQQALRVLGEMRREGVRPTEFTYNCCMAACEKSGL
WEETLSLMMDMKEQEDLVPDSYAFSTAMMACSKAGRLDDVLNILEEMRNM
PGGGGPNLVNYNIAIGACARAGEWELMLKEMDRMKWEDVTPTEMTFVTPL
DACARSGRVSVALTLLHRMHENSVRVGLGAYTCAVTTACRGGDASSAAKL
LDDMSAAGHLPNEVTYAVAALACRDGANADAAVDLLRRRKAQHLRPDPVF
GGFVVQACCNAGDMERGLGIIKKMKAEGLVPDGDFYNSIIAGISATFSVD
PGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long