mRNA_H-paniculata_contig2609.7126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2609.7126.1
Unique NamemRNA_H-paniculata_contig2609.7126.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.330e-23
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRL 225
            QNVLENYP+FL+LL +++I RP +A  AGAIRL GFV YV GYRTGNP+KRH GA GYIGL+TMLG ++E A ++
Sbjct:   65 QNVLENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGYRTGNPEKRHKGAFGYIGLITMLGCAIESAVKI 139
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.490e-22
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSME 210
            QNVLENYP+FL+LL +++I RP IA  AGA+RL GFV YV GYRTG+P+KRH GA GYIGLLTMLG ++E
Sbjct:   65 QNVLENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGYRTGDPEKRHRGAFGYIGLLTMLGCAIE 134
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: G4ZNA9_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZNA9_PHYSP)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-20
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLL 228
            QNVLEN P F  +LA SSI RP +AA AG +R+ GFV+YVKGY TG+P KR  G  GY+G L MLGLS+E A RLL
Sbjct:   69 QNVLENLPLFYAMLATSSIYRPKVAAAAGLVRIAGFVMYVKGYSTGDPGKRRKGNFGYLGTLVMLGLSLEAALRLL 144
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: A0A225WXS0_9STRA (Microsomal Glutathione S-transferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.440e-20
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLL 228
            QNVLE+ P F  +LA SSI RP IAA AG +RL GFV+YVKGY +G+P KR  G  GY+G+L MLGLS+E A RLL
Sbjct:   69 QNVLEHLPLFYAMLATSSIYRPTIAAAAGVVRLAGFVMYVKGYSSGDPGKRRKGNFGYLGMLVMLGLSLEAALRLL 144
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM)

HSP 1 Score: 94.4 bits (233), Expect = 1.440e-19
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLL 228
            QNVLEN P F  +LA SSI RP IAA AG +R+ GFV+YVKGY +G+P KR  G  GY+G L MLGLS+E A RLL
Sbjct:   69 QNVLENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGYSSGDPGKRRQGNFGYLGTLVMLGLSLEAALRLL 144
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: A0A835Z1D6_9STRA (Microsomal glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.920e-19
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKR--HGGAVGYIGLLTMLGLSMEVAYRLLTS 234
            QN+LENYP FLMLLA+ S  RP +AA  GA+RL GF+ Y KGY +G+P KR   G AVGY+GL  +LGL  EV  RL+TS
Sbjct:   69 QNILENYPPFLMLLAVGSTYRPALAAAFGALRLFGFISYYKGYSSGDPKKRLNPGTAVGYMGLFGLLGLGFEVVARLITS 148
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: W4FQF1_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQF1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.870e-19
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLLT 231
            QNVLEN PTFL LL +SS+ RP  AA AG +R++GF++Y+  Y +G+P KR  GA GYIGLLT++GL  E A+RL+T
Sbjct:   67 QNVLENLPTFLSLLFVSSVYRPLWAAIAGLVRVIGFIVYIHFYSSGDPAKRQYGAFGYIGLLTLVGLCFEAAFRLIT 143
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BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: A0A6G0XCR5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCR5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.300e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLLTS 234
            QN+LEN P FL +LA SSI RP  A  AG +R+LGF++YV  Y +G+P+KR  GA GY GLL  +GLS E AYRL+T+
Sbjct:   67 QNMLENLPVFLSILATSSIYRPMWATIAGLVRVLGFIVYVASYASGSPEKRQYGAFGYFGLLVSIGLSFEAAYRLITA 144
[Close]
BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: A0A485KKA4_9STRA (Aste57867_8425 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKA4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.550e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLLTSS 237
            QNV+EN P +  LL  SSI RP IAA AG  R LGFV YV GY +GNP+KR  G  GY+GLL  LGLS E AYRL+TS+
Sbjct:   67 QNVVENLPVYYTLLLSSSIFRPEIAAIAGLTRSLGFVAYVIGYSSGNPEKRMWGGFGYLGLLASLGLSFEAAYRLITSA 145
[Close]
BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Match: D0MR46_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0MR46_PHYIT)

HSP 1 Score: 91.3 bits (225), Expect = 1.920e-18
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QNVLENYPTFLMLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGLLTMLGLSMEVAYRLL 228
            QNVLEN P    +LA SSI RP +AA AG +R+ GF++YVKGY TG+P KR  G+ G++G L MLGLS+E + RLL
Sbjct:   69 QNVLENLPLLYAMLATSSIYRPKVAAAAGVVRIAGFIMYVKGYSTGDPGKRTKGSFGHLGTLVMLGLSLEASLRLL 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2609.7126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF61_9PHAE1.330e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN3_ECTSI2.490e-2270.00Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
G4ZNA9_PHYSP2.840e-2063.16Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A225WXS0_9STRA5.440e-2063.16Microsomal Glutathione S-transferase n=1 Tax=Phyto... [more]
H3GBW9_PHYRM1.440e-1963.16Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A835Z1D6_9STRA3.920e-1960.00Microsomal glutathione S-transferase n=1 Tax=Tribo... [more]
W4FQF1_9STRA4.870e-1958.44Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A6G0XCR5_9STRA9.300e-1957.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KKA4_9STRA9.550e-1962.03Aste57867_8425 protein n=1 Tax=Aphanomyces stellat... [more]
D0MR46_PHYIT1.920e-1857.89Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2609contigH-paniculata_contig2609:12771..14397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7e-14
Seed eggNOG ortholog67593.Physo142592
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MAPEG family
EggNOG OGs2CUIV@1,2S4E5@2759,3QFH3@4776
EC2.5.1.18
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons2
Model size1182
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2609.7126.1prot_H-paniculata_contig2609.7126.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2609 12804..13458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.59427-UTR-H-paniculata_contig2609:12770..128031622929778.59427-UTR-H-paniculata_contig2609:12770..12803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2609 12771..12803 +
1691481006.9286737-UTR-H-paniculata_contig2609:12770..128031691481006.9286737-UTR-H-paniculata_contig2609:12770..12803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2609 12771..12803 +
1622929778.6340377-UTR-H-paniculata_contig2609:13458..143971622929778.6340377-UTR-H-paniculata_contig2609:13458..14397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2609 13459..14397 +
1691481006.9546647-UTR-H-paniculata_contig2609:13458..143971691481006.9546647-UTR-H-paniculata_contig2609:13458..14397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2609 13459..14397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.6074524-CDS-H-paniculata_contig2609:12803..129021622929778.6074524-CDS-H-paniculata_contig2609:12803..12902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 12804..12902 +
1691481006.9387078-CDS-H-paniculata_contig2609:12803..129021691481006.9387078-CDS-H-paniculata_contig2609:12803..12902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 12804..12902 +
1622929778.622715-CDS-H-paniculata_contig2609:13347..134581622929778.622715-CDS-H-paniculata_contig2609:13347..13458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 13348..13458 +
1691481006.946567-CDS-H-paniculata_contig2609:13347..134581691481006.946567-CDS-H-paniculata_contig2609:13347..13458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2609 13348..13458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2609.7126.1

>prot_H-paniculata_contig2609.7126.1 ID=prot_H-paniculata_contig2609.7126.1|Name=mRNA_H-paniculata_contig2609.7126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MLLAISSIQRPYIAAGAGAIRLLGFVLYVKGYRTGNPDKRHGGAVGYIGL
LTMLGLSMEVAYRLLTSSD*
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mRNA from alignment at H-paniculata_contig2609:12771..14397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2609.7126.1 ID=mRNA_H-paniculata_contig2609.7126.1|Name=mRNA_H-paniculata_contig2609.7126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1627bp|location=Sequence derived from alignment at H-paniculata_contig2609:12771..14397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAATGTGCTGGAGAACTACCCGACATTCCTAATGCTCCTCGCGATATC
TTCGATCCAACGCCCGTACATCGCGGCCGGCGCCGGCGCAATCCGCTTGT
TGGGCTTTGTTCTCTACGTCAAGGGATATAGGGTAAGTAGGCGTCGCGTG
TTTTCGCTGTGCTAGATTATAGGCGACTAGGGAGGGGTGGGTTAGGTTAT
ATTGTTGCGTATCAAAAATAACGTACGGGAAAACAGCATCCCTACGTGCC
GTAGTCTAGCCATATGTGTTTAATTGACGATGATGCATTGGCTCGTATCT
TGGACAGTTGTGTTCCATGTACTTGAAAAAAACAGAGAATGGTGTAGTTT
AATGGAAAATTAATGCCATCCAGTTAGTCTTCAAGTATTGTGTATCCTGC
CGGTGCCCCAAAACAATCCATTCTATATTTTTATGGTCGCTATTGTGGTT
AGCATGTATCGGCCGCTGGCCAGTTCTTTCCTCGGTTACAACGAGCATAA
CATGAAATTGCGGATCAGCCCACTAGCTCAAGTCACTGATGGATGCCTCA
GTTGTCATTGTTCGCGTTGTTGCACAGACTGGAAACCCGGACAAGCGGCA
CGGTGGAGCGGTCGGCTACATCGGGTTGTTAACAATGCTCGGCCTATCGA
TGGAGGTGGCCTACCGTCTCCTCACCTCATCGGATTAATTTCAGCAGCAA
GCCAACGAAACACGGGGGGAAATTTGTGGCCGATGTGAATAGCACAAATG
AAGAGGCGATGGGATATCGTGCATTGAAAGATAACTATTTCAAGATTATA
TTATTTGAGGTATACCTTGTTGCATGATCATCGCGGTTGCTGAGGAGACG
ACCGAACAGCGATTCAAACAAGGATGCTGTTGTGTGTTGACTGAGCCCAA
TCGTGGTGTAGGAAAAGGCGTGCTCTCTTGTCTCTTTCTTTCCCTCTCTT
CTGTTCCACTTTTCGGTGTTTTTTGGTGATATGCTGGCAGAATATGTCCT
AGAAGTACACGAGCTTTGAGACAACCTCGAGGGGTTTTGTTCGGGGGTAT
GATTCTGGCTACCCCTACCCCCTTCTCCCGGGAAGATACGAAGACAAGAA
CGGCCGGGCAAGTGACTCGATCATCGCTTTCACATGTGCACAAGTATAGA
TTGACATCAAATCTCCAGACCATAATGTCGACGGAAGGTATAGCGCTGTG
CTTTCGGGGCAGGAGTGGCAAATTCGAAAACATGAGATCAACATACGCCT
TTGTCCCGGAGAGTAGTAGTCTAAAGTGGAGTGCGCCCGCGTTGCATCGT
TATTATCCACACTTGAGGGTTTTACGCGGGTTGTGTACGACAGGAGTGTG
ATCGACATCTGTAGTCGCTTGCGGCGTAGTGTCGTGGTATATGGATATAG
CTTATCGTGGTGGTACGATAGCCTTTAGAGAGAGACGATAGATCCCAGGG
ATGTGTTATCCGTTTCTCTTCGAAGGGATTCGGACCTCAATTAATTATTC
AAACAAAAATACACGATTTCACTGTACTCTGGCTGAATTTTTACCGCAAT
TTTCAACTGTACGGTTTGAGATATTCGACTTGAAATAATATATAGTAAGT
CTCGGGTCAAAGAAGGATGTGTTGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2609:12771..14397+

>mRNA_H-paniculata_contig2609.7126.1 ID=mRNA_H-paniculata_contig2609.7126.1|Name=mRNA_H-paniculata_contig2609.7126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig2609:12771..14397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCTCGCGATATCTTCGATCCAACGCCCGTACATCGCGGCCGGCGC
CGGCGCAATCCGCTTGTTGGGCTTTGTTCTCTACGTCAAGGGATATAGGA
TGCTCCTCGCGATATCTTCGATCCAACGCCCGTACATCGCGGCCGGCGCC
GGCGCAATCCGCTTGTTGGGCTTTGTTCTCTACGTCAAGGGATATAGGAC
TGGAAACCCGGACAAGCGGCACGGTGGAGCGGTCGGCTACATCGGGTTGT
TAACAATGCTCGGCCTATCGATGGAGGTGGCCTACCGTCTCCTCACCTCA
TCGGATTAAACTGGAAACCCGGACAAGCGGCACGGTGGAGCGGTCGGCTA
CATCGGGTTGTTAACAATGCTCGGCCTATCGATGGAGGTGGCCTACCGTC
TCCTCACCTCATCGGATTAA
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