mRNA_H-paniculata_contig26042.7109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26042.7109.1
Unique NamemRNA_H-paniculata_contig26042.7109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26042.7109.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-5
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 3 
Query:  531 SRT*QDTTEFFRGLMGDHVEPQEVFLGCTVDQGGNVVNAIDDLGSDV 671
            SR  Q T E+F G MG+ VEP +VFL  TVDQGGNVVNA   LG  V
Sbjct:    2 SRNSQLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQV 48
[Close]
BLAST of mRNA_H-paniculata_contig26042.7109.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-5
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  543 QDTTEFFRGLMGDHVEPQEVFLGCTVDQGGNVVNAIDDLGSDV 671
            Q TTEFF  +MG++V+P++VFL  TVDQGGNVVNA  +L  +V
Sbjct:    2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEV 44
[Close]
BLAST of mRNA_H-paniculata_contig26042.7109.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.800e-5
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  549 TTEFFRGLMGDHVEPQEVFLGCTVDQGGNVVNAIDDLGSDV 671
            TTEFF  +MG++V+P++VFL  TVDQGGNVVNA  +L  +V
Sbjct:  332 TTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEV 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26042.7109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDJ6_9PHAE1.020e-561.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.390e-560.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE3.800e-560.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26042contigH-paniculata_contig26042:1961..3425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size832
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26042.7109.1prot_H-paniculata_contig26042.7109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26042 2039..2470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.0420198-UTR-H-paniculata_contig26042:1960..20381622929777.0420198-UTR-H-paniculata_contig26042:1960..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 1961..2038 +
1691481006.410312-UTR-H-paniculata_contig26042:1960..20381691481006.410312-UTR-H-paniculata_contig26042:1960..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 1961..2038 +
1622929777.1179993-UTR-H-paniculata_contig26042:2470..24921622929777.1179993-UTR-H-paniculata_contig26042:2470..2492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 2471..2492 +
1691481006.4293594-UTR-H-paniculata_contig26042:2470..24921691481006.4293594-UTR-H-paniculata_contig26042:2470..2492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 2471..2492 +
1622929777.1315684-UTR-H-paniculata_contig26042:3125..34251622929777.1315684-UTR-H-paniculata_contig26042:3125..3425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 3126..3425 +
1691481006.4383843-UTR-H-paniculata_contig26042:3125..34251691481006.4383843-UTR-H-paniculata_contig26042:3125..3425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26042 3126..3425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.1047041-CDS-H-paniculata_contig26042:2038..24701622929777.1047041-CDS-H-paniculata_contig26042:2038..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26042 2039..2470 +
1691481006.4200118-CDS-H-paniculata_contig26042:2038..24701691481006.4200118-CDS-H-paniculata_contig26042:2038..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26042 2039..2470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26042.7109.1

>prot_H-paniculata_contig26042.7109.1 ID=prot_H-paniculata_contig26042.7109.1|Name=mRNA_H-paniculata_contig26042.7109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MGAFVTREITPQDRKRASRLFTTWSAINLRRKSMVQDVGFKLFLSNFAAA
YITETTHHSTFTSNLDALVEEAKEDVMTGIKAHKESCTKLGWNGPFLPGE
TDLATTANVEYIIFTTLVHPPGLRRTQARWVGDQAITEQLQCR*
back to top

mRNA from alignment at H-paniculata_contig26042:1961..3425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26042.7109.1 ID=mRNA_H-paniculata_contig26042.7109.1|Name=mRNA_H-paniculata_contig26042.7109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-paniculata_contig26042:1961..3425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAACGGTGGGAGTTCTACACCCGGCAACTCACGCGCAAGGGTTAAGG
GCGCGGCGAAGAGGGGAACTGGGGCCAGATGGGTGCTTTTGTCACCCGTG
AAATCACTCCGCAAGACCGGAAGCGTGCCAGCCGTCTCTTTACTACCTGG
TCAGCCATCAATCTGAGGAGGAAGAGCATGGTTCAGGACGTCGGCTTCAA
GCTGTTTTTGAGCAACTTCGCAGCGGCCTACATCACAGAAACGACGCACC
ACAGCACCTTCACCAGCAACCTTGACGCACTCGTCGAAGAGGCGAAAGAA
GATGTCATGACAGGCATCAAGGCGCACAAGGAATCATGCACCAAGCTCGG
GTGGAACGGCCCGTTCCTACCTGGCGAGACCGATTTGGCGACGACTGCAA
ACGTTGAGTACATCATCTTCACGACCCTCGTGCATCCCCCCGGGCTCAGA
CGAACTCAAGCGCGTTGGGTTGGCGACCAGGCAATTACCGAGCAGCTACA
ATGTAGATGACATTTTATATTGGATGAGAAAGGTAAGGGTTTGGTGGTTC
AAACCTTTCTTGAACATTTATTCCTTCGTCAACCATGCGCTGAATTTGGT
GGAACTGCGGTTTCTTCGCTTTCGTGGGCGTCATTGTATAATTACTCAGG
CAAATGGCTTTCATCAGGGTACCATTGCACTGACGATAAAATTATATGTC
TTCGTTGTCTGTTTTTTCTTGGTTTACTTTCTATAGTTCTATATTTCTAT
TTTTCCTCAGCCTCTGCTGTTTTTGTCCGATATTATGGGGTAGTTTTACC
ATCTGGACATTTGGATTCGGGTACGAAGAATAGCCCAACAATCGTAGGTA
GTTATTGGACCGCAAACAGCGCTATACGGATATTGGCAGTGTTTTATTGT
ACTGAATCTGCCGTTGACTGCAGATGATCCGGTCTTCTGTCGGTCATTAT
CTGGTTCGGATTCTGGATTATGAGTGTCTGAGTTTTTGGCCACATCCCCT
GGCTTGGTTTTGCCGGGTGGAGCCCCTCCACTCTGTCACTTACATCTGCT
TCCCTCAACGAGACCTGTAACAAAGCAGTCGTGTAGAATCCTTTGTCAGT
TCAGACATCGATAGGCTTCAGGAGTCTATGAATGATCAAATAGGTTTTGG
CGTTGTTTTCAAAAGTCGTACCTGACAGGATACCACGGAGTTCTTCCGTG
GACTGATGGGAGACCACGTCGAGCCCCAAGAAGTTTTCCTTGGTTGCACG
GTGGACCAGGGTGGCAATGTTGTTAACGCAATCGACGACCTCGGCAGTGA
CGTGGGTGCTGGGAATTGGCGGCACCGAGAGTATGTCCAAGAACAGGTCA
ATGGAGAAAGTCAAGAAGAAGCTTGCAGCAGTGGCACAATGCTATGAGCA
ACGACAAGCTAGAGCTACTGCAACAGCTGGAGGAAGGGCTGAGTACCGTC
TACGAGTTGGTCAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26042:1961..3425+

>mRNA_H-paniculata_contig26042.7109.1 ID=mRNA_H-paniculata_contig26042.7109.1|Name=mRNA_H-paniculata_contig26042.7109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig26042:1961..3425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCTTTTGTCACCCGTGAAATCACTCCGCAAGACCGGAAGCGTGC
CAGCCGTCTCTTTACTACCTGGTCAGCCATCAATCTGAGGAGGAAGAGCA
TGGTTCAGGACGTCGGCTTCAAGCTGTTTTTGAGCAACTTCGCAGCGGCC
TACATCACAGAAACGACGCACCACAGCACCTTCACCAGCAACCTTGACGC
ACTCGTCGAAGAGGCGAAAGAAGATGTCATGACAGGCATCAAGGCGCACA
AGGAATCATGCACCAAGCTCGGGTGGAACGGCCCGTTCCTACCTGGCGAG
ACCGATTTGGCGACGACTGCAAACGTTGAGTACATCATCTTCACGACCCT
CGTGCATCCCCCCGGGCTCAGACGAACTCAAGCGCGTTGGGTTGGCGACC
AGGCAATTACCGAGCAGCTACAATGTAGATGAATGGGTGCTTTTGTCACC
CGTGAAATCACTCCGCAAGACCGGAAGCGTGCCAGCCGTCTCTTTACTAC
CTGGTCAGCCATCAATCTGAGGAGGAAGAGCATGGTTCAGGACGTCGGCT
TCAAGCTGTTTTTGAGCAACTTCGCAGCGGCCTACATCACAGAAACGACG
CACCACAGCACCTTCACCAGCAACCTTGACGCACTCGTCGAAGAGGCGAA
AGAAGATGTCATGACAGGCATCAAGGCGCACAAGGAATCATGCACCAAGC
TCGGGTGGAACGGCCCGTTCCTACCTGGCGAGACCGATTTGGCGACGACT
GCAAACGTTGAGTACATCATCTTCACGACCCTCGTGCATCCCCCCGGGCT
CAGACGAACTCAAGCGCGTTGGGTTGGCGACCAGGCAATTACCGAGCAGC
TACAATGTAGATGA
back to top