mRNA_H-paniculata_contig2604.7108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2604.7108.1
Unique NamemRNA_H-paniculata_contig2604.7108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: A0A6H5KZ57_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ57_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.760e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   66 RRQRKYRGTMGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSR 227
            RR R+Y  +    +SP  DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV+R
Sbjct:   14 RRSRRYSRSP---ESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVAR 64          
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: D7FMT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.770e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 3
Query:   66 RRQRKYRGTMGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWV 221
            RR R+Y  +    ++P  DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV
Sbjct:   14 RRSRRYSKSP---EAPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ57_9PHAE7.760e-1262.96RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
D7FMT5_ECTSI1.770e-1161.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2604contigH-paniculata_contig2604:9807..16945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size587
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2604.7108.1prot_H-paniculata_contig2604.7108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2604 9909..16853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.9210737-UTR-H-paniculata_contig2604:9806..99081622929776.9210737-UTR-H-paniculata_contig2604:9806..9908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2604 9807..9908 -
1691481006.3643355-UTR-H-paniculata_contig2604:9806..99081691481006.3643355-UTR-H-paniculata_contig2604:9806..9908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2604 9807..9908 -
1622929776.9948368-UTR-H-paniculata_contig2604:16853..169451622929776.9948368-UTR-H-paniculata_contig2604:16853..16945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2604 16854..16945 -
1691481006.398948-UTR-H-paniculata_contig2604:16853..169451691481006.398948-UTR-H-paniculata_contig2604:16853..16945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2604 16854..16945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.944194-CDS-H-paniculata_contig2604:9908..102671622929776.944194-CDS-H-paniculata_contig2604:9908..10267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2604 9909..10267 -
1691481006.373679-CDS-H-paniculata_contig2604:9908..102671691481006.373679-CDS-H-paniculata_contig2604:9908..10267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2604 9909..10267 -
1622929776.9635837-CDS-H-paniculata_contig2604:16819..168531622929776.9635837-CDS-H-paniculata_contig2604:16819..16853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2604 16820..16853 -
1691481006.387085-CDS-H-paniculata_contig2604:16819..168531691481006.387085-CDS-H-paniculata_contig2604:16819..16853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2604 16820..16853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2604.7108.1

>prot_H-paniculata_contig2604.7108.1 ID=prot_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSRDLLGS
SSACMPCRDVGVDISSKETTLLSSLPAHFLCCDELLQLGVTSAMALRCPL
RFASLATTLVHSSFLCTLSFVSFCSRHNFC*
back to top

mRNA from alignment at H-paniculata_contig2604:9807..16945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2604.7108.1 ID=mRNA_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7139bp|location=Sequence derived from alignment at H-paniculata_contig2604:9807..16945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGGTTATGTGCAGTTGTGTCCAGAGGTGCAAAGACCAAAGGGTCGGGT GTGCCAAGGCGTGAGAGGAGGCAGAGGAAATACCGTGGGACCATGGGCAG ACATGACTCGCCCTCCGATGACTGCGGTAAGATAAATAGTTGTTATGATA GAGACCTTTGTCTGCGCCTTCTGGTCAACGGTTGGTGCTGTTTGCCACTA GAAGGCATAAGTCAGTATTTTTCTGCTGGTTGTTTGACGATCAACCACAG GCTCTAGCACATTGCAGCGGTAGACCACTCAAGTGGGTAGGGCTCTAGGC TAGTGCGCGTGGAAACGGTGGGTGGAGCCGTGCAGATTGTCGATGTCTTC TACAAGCATCTTGCATGCATATGGGGGGCGAAGTCATGGAAAAGAACGAG GCCAGTTCTTGTGTGTGGTCAATTGTTTATTTTTGTGCATATCGTCATCT GGTGTTGTGTTCGAACAAATCGTAAACTGTAGAGACGATGAGCTTTTATT ACTAAATAGTGCCACAGCTTTCTGCATGGCCCGAGTTCTCCGGGATAGCG AAGTGCATCCTTATGTGATGTATATAGTTATTAGGAGATAAGATGTTGGG GTGTATTGTATTACACGTGCAGCTGGTACTGCATAGGTTCGTGGGAAAGT AGAACCTTCTGCGGTGTTGGGGTGGGTTGGATCTAAGTTGCAAGTTTTCA ACGAACTCGTTCAACTGACAGATAAGTAGCTCTCTTGGTACAAACCAGTG GAGACCGTCTTTCAGTGGTGCAGGGGCTGGACGTGTGTCTCCATGGTTAT TTACTGCACTTCCCAAACAGCGCAAATGGGCGACACAGGGTTGGGTAACT AGTTGAAAAACACTAGATTGTGCACGAGACACTGCGTTGAAATTGTAGAG GAAAGGATGTTTCGAGTCGCGCAGATGGGAGTAATACAGGCACTTGAGTC ATGCGTCATACAGCCATTTTGAGGCTGGTGTAGGGGACTTTCCCCAAATA CTATGTAATGGTGATCCTTTCTTAACTCTAGTACTCAGCATATTTTCTTG TGCACAATCAACAAAATATCGTATTCAACTATTCTTTTGGACAAAGTTAT AAACACGCCTTGGTGTCAGGACGAAAACCCTACATCACAGGGTCTAATCC TATGAAGCATTGGCAGCATTTCTTACAGTGGTGGACCGACACGCATACAA CGCTGTTGAAGCTAGAAATTACGATGCAGCCTTATAATAAAATAGCCGCG ATGCCGCCCCCGGTCTGCCACGTGAAAAGTGACGGGTGCAAATTTGCAAT TACAAATTCAATCGTGTAGGGTTGACAATTACACTATATTTCCTCTCTGC CAGAAGTAGGATACTCGTGATTGCAGCGGCATTTAATATTTCGAACGTTT TTACTGGAATACTTCGTGTTGTCTGGGTTCATCTCCAAAATTTGGTGTAA ACCGGTTAACTTTTCAACCCCAAAAACATACGCTGCAAAAAAACGACTTT TCGGGTGAATGAAGGCCTTAGTATTCTAAAATATTCGGAGGTTAAACCAA AGAAGACGTAATATTCTATTCAAGAATGAACAATCAGAATTCAGAGATGT TCTTGTGCCTCTGTAATAAAGACTACCCACACTTGCGGAACACAGCAACA TTGAATCAAACGCAAAAAAAACGCTGCAGAAGTCAACATTCGGCTCGTGC AGCGTTGCTAGCTACCTTCCCAGTGCTGTCTTCAGTCGTACGGTCATTAT CCAAATATATTTGACACCCGCGCGCGTTTCACTCCTACGACCCCAACTGG CTCAAGCCTGGCCCTCGCAGACCGTAGTCAATCCCTAAAACGAACTCAAA AGGTGTTTGAATTGCGCGGTAGGTAGGCAGGTGGTGGCTTCTTGTAGAGG GTGTTAAAAGATGCGGCCCACCACTAAAGAGCAGAGGTTGGCCCAAATTT TGGTTCTGCAGAACTGCAAAAGTAAATGTAGAAATTTCGGCATAGGAAAC TGAGTTAAACTTTTTGGGTGGTAAGAGGGTGGGGCTTTACCGGACTTTGT AACGGCCAAAAGGTAGATTTGCCAATGATCATTGGAAATAATGACAAATA CGTCGATAAGATGGAATGTCTTGATCAATTTTGGAAAGCTGGTCAATACA TCTCAGGTGCCAAGTGTTTCGCCGTTTTTGAGATTTCATCTTGGATTCAG TTGTGGGAGAATATGGTACCGTCTCTTCCCCGAACGGCCAAATAAGAAAC AAGCGCTCCACAGGGGGGTGGTCTCATAAAAGGTGGGGCTTCAGCGAGGT CCTCCTTTTTCGCATACCTCTGAATGCCCCTTACAGCACCTCTTTGGGTG TAGGCAAGCTGATGGGCATCTTTGGATACTATGCAAGTGCTACTGCATGT GTGTAGCGCAAGGAGCAGTCAATGCTGCAACACCATCTTCGCAGATACTC ATATGTCCTCGTCTAGGGATGGATTCACAATCTACATATGTGGCATATAT CCTTTTCTTAAATTTTTCGTTATTTTGACTGCGCAGACTCGCAGATAAAG GAAATGATTCAAAAGTAGACTCTGTATATGCTCGGATGGATGCTCGTCTG CTAGGTATCTCAAACAAAATAATATAAACCGGAGAGCTGGGAAAAACTTG AGCACGGCACGTCACGTTTTTTTGCATTTCACAATCTGTTGTTGTATAAT ACTGTAGTCACCATGATGCCGCCAGGATCCCTACACTTTTTGTGGCACCT ACAAATCCACGCGCTCTCTGCCGGCGTGGCAATGCCCACCAAACTTTGGC GGGGTTTGCTTCGGGCACTAGCTTCTTACGACATACGTTTTCACATAAAA ATGCTACTGCTTCACTCTAATGCCAATGTCACACTAGTGCCCAGGTAGGT CGGTGCGAAGAACAACTGATATCCCGCAAAATGCAAAACAAGTAGCCCGA AGACCGGCAGCGCTGCACAAACCTGTTTTGACAACGACGCACAGACCAGC GCATATAGACATGCGCTGAGAGTTGATCAGGTCAAGCCAACAACTTCCTG CTAACCCGCATACAACAGAGTGATGCGGGGGTTGTATGGAACCATTGGTC TTCTGTAGCTTGAAAACTGCCGGGGAGTTACTGCTAGTCATCGAAATCAT AAACCAGACATGATCCAACAGTCATCAGTCTTTTCGGTCCGTACAGTCAG TCAGCCTTGTATATGGGATTTACTACGCAGCCAACGGTGAGAGGTACAGT CAGTTTCATATATATATAGGTTTTTGAGTGCAACATGCCCAACGGACTGA TTCCAACCATCCCAAGAACAAATTATTTCGTCACGGTAGGCCTCTTTTGC ACTCCCTCGCACAAGCGTTGATGGCATCGTGATATCATCCATATTTTCGC GTGCCCCCCAGCAGGTGAATTCTTGCTCTTCAGTGTCGTACAGGCCGAGT TCTGCATGTCGATAAATCACTTTTCGAAGACTCGGTACTTTGGCAAACAC GGAATCCGATGACAATCGCTGCAAACGTGAGGATGTTTCGAGATCATGGA ACCAATCACGAACTTAAAAGGCCCATGTCCAGGTTACCTTGTACCTCTAA TGCGCTCATATATATGGGGGGGCACGGAGGGAAATATGAAAAATACAATG ATCATAGTCTATTCTCGGGTTTGGGCTCTTGGTGGAGAGCTATAGCCGAA TGGACCGTTAATACTCCGTAAAAAACAGATTTTTTTATCGCAAACCTGGT CGTGGTCGGTTCTGTTCGACCTGACCTGGCTGGACCCCTAGAAAAAAATT AAAGCGTTCAAAATTGCACAGTTGTGAGGAGCACTAGGCTTTCAGGAGAG GCTGACCTCGAGAGAGCAACGCCGACTCCAGGGAGTTGATTCTCTCAGTT TTGGGATGTAGTGCGAAGCCGGCACTTGGTCTTACTCTATTGTTTGTAGA ATGTTTGTAGATGAACTGGTCAAGTACAGGGTCGGAGTGAGTTAAAACAA ATGTGCTGATAATGGTAGATGAACGAACGACCTCTGGAGTTGTGTAGGGG ACCGAGGATCATAACCGTCGGGAATATGCTCCCCACAAGTAGATATAGCC TTGCGTTGCATCTTGTCTCGTTTTGATAAAAACGGTATTTGTAATAATCT CCGGAGAAAAACTGGGATTGGACGTCGGGTAGGTCATACTCCAAGGCCGG TCAAGAGTTGAAAGACCCAAATTGGCTTATTTGTCTTTCTAGTTACAAGA TCTGTGCAAACTTTCAGCGTGTGATGCCTCATATTCACCTCGAAATCTTG CGAAGAAGACTTTTGGATATAAAAGAGAAAGACAGTACTGCTCGTGATCC TCGTCAAAAGAGACTTTGAGCTTCACCTGACGAAGAGTTTCTTGTTGTTG GATCACTACTGTAGATATTCGCAGTATTCTCGAAGTGTCCTACTTAAAGG CATGACGCGACCCTGAAGTGATCATGGGTGCTTGTTCTCATACCGAGTGG TAAATCAAATGGCAGTCACTCTCGAATCCAGAAAAACCCTAGCCCGAAAG CTACAAACTCGATTCATAAGTATAATCGACACTCTAGTGTACGCATGACG ACGGTCTTGGGGCGGATTTTTTACTACTGCAATCACTACTCTTCAAAAAC CCAGGGTGTGTAAGTTGTTTCCGAATTGCCTTCTCCCCTGTGTTCGCATA TTTAACGTTTTCAAACCCAATTGTTTTGGAGTAATATGTGCCGGTGTGAA ATATCTCGGATGTTTTCTGTTGTCTCTGTTGAATTTTATTGTGACGGAAG AGTCGCCGTATCCATGAGATTACGTTGATGCCTTCCCATTGCTTCAGCTT TTTACCCTTGGTGGTTTGCCAATACCATGCCTCTCTAAATCGCTAGGGAA TTTTCGGACACCGCTAATAATTGTTATCGTGCTTCCTGAGCCAAGCTTTT TTACGACCAAGTGATGTTGACACGGTGGGTGGATTCCTCAGCGGCCCTTA TAGCTACGTAGTCACACTCAGTCAGAGCCTTCACACTTATTCGTCCTCGC GGCGAGGTCGTCGCGTTTTCGCTGCTACTTTTGGTGCAGGTTGGACGTTG TGTCACTACCTGGGACAATCGTTGGGAGACGACGCATGAACTGCCTTCAT TTGTGCAGTAATATTTCGTCTTGTCAGTTTAGTGTGTTGGTTGCGGCGGC AGGGATCGAGAGAGATGGGTACACGTGAAGGCAGTACAGTGCAGTTAGTA CAGGCCGTCACATATGAGTTCAAGGGGATGTCAATATGTGCATTAGACTT CAGCTTTATGAAACCGAACTGGGACTGTGGTACTTCCGATTACTCCACGT CTGAAGCACCTTCAAGAAGAATATTTGTAAATATGGTAATGCCTCGAACC GCGATCATACGATCCAATGTGAAACCTGGACCTAGATGTAGATAGGTATC ACTGGCGTGCGAATGATTATCTGGATAGTCATTCCGGTACTGACAAGAAA TGTTATTGTGCCGGTGGAAAATCTTGCGGAGATCTGTCGGTTGACGAGTT TTTTCTACGGTCCAATGTCTCTGTTTTTGAGATTGTCGCCGTTTAAAAAC ATTCACACTACCTCTAGGTTGTACGGTAGTCATCCCTCGCAACGCGAACA CCCTGTGGTCAACGGGACTATGTTAGTAGCTGGCTGCGTGAGTGGTGAGG TAGATTTAACGCTCAAAATGGGTTTCGTCTCTCTTCCAGCTTAGACATCA AAACCCCTCAAACGTATCTATGTTCTGAGATGTTGATTGCGGGACGTGAC AGTCATTGTCTAATGTGACGGTTCCATTCCCAATCCCCGGGTTTATGTAA GGTAGTCTCAGTTGAGCTGGAAGCAGGAAGCACGGACCGTGTGACCACCC CACCAACTTACAGACTTGTATCGAACCAGGGCTTTTACTGGCGTACAGCA ATATACAGCTAATACAAGAGACCAGAGCATTGCCAAGGACTACTTCTACC ACCCCAGCCGTACCGCACTGAGAGTATTGTGCTATATGGTCAGTAACAGG AAACAATAACCTACGTGTGTGAGAAACTCCGCAATACAAACAGCAGATAT CACATCTCTCTTCGAATAAAAAAAAATACTGGAGAAACACAACATTACAA CAGCCGTACCATAGAAGGAAGTATGTTTTTCATCTTTAAATTGCTGAAGT GCGTACAACATCCAAAAACCGAACGAGCTTTAGAGGGGATATATGCGGCC ACTGACCGTTTGTCTGAAGTCTCCACATGAGACAATCTGCCATGTGCCTG CCTATGAAGGGGTGGCGGAGTAAAAGTGGAGTATGACACTGCACGTTTAG ATGATGAATAATTGCCTCGAGTGAAGTGTTGGGATCCTGCAGGTGATGTT GGCGTTTACATGGAAGTGGTCTCCGTGCATCATACATTCATATTCGCGGA GCCAGTCTTTTCTTTAATGTTAGAATATGCAGTCAACCATATACATTCAG TATACTTTCAGTCCGGGGTCTCCTGCTTTTTTCAAATCGAGTTTTGAACA TTGACATAAATGGTGGAATGTCCCCTGAAAAAACCCTACGTTAGTGAGTG CATCTTCAATGAACATATCAACTAACCCATCCCACTGCTCCGTTTGACCG CCCCTGCCTGGAACATGACACATGACAGCGAATATTTTCGTGGGCAACAT GAACCCTACTTCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCG GCAAAATTGTCGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCG GCGTGCATGCCTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGAC TACGCTCTTATCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGC TGCAGTTGGGGGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTT GCCTCCCTTGCCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTC CTTCGTTTCTTTTTGCTCCCGCCACAATTTCTGTTGAGATCCTAAGGGTC TTCTGAGCGGCAACACAAGTCATTAGACAGACCTTCAAAAGCTGTTCTGC GTCTTATGTCCAACGCAAGCGAACAGTGACCTTCTCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2604:9807..16945-

>mRNA_H-paniculata_contig2604.7108.1 ID=mRNA_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig2604:9807..16945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAGACATGACTCGCCCTCCGATGACTGCGATGGGCAGACATGACT
CGCCCTCCGATGACTGCGCGAATATTTTCGTGGGCAACATGAACCCTACT
TCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCGGCAAAATTGT
CGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCGGCGTGCATGC
CTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGACTACGCTCTTA
TCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGCTGCAGTTGGG
GGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTTGCCTCCCTTG
CCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTCCTTCGTTTCT
TTTTGCTCCCGCCACAATTTCTGTTGACGAATATTTTCGTGGGCAACATG
AACCCTACTTCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCGG
CAAAATTGTCGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCGG
CGTGCATGCCTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGACT
ACGCTCTTATCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGCT
GCAGTTGGGGGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTTG
CCTCCCTTGCCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTCC
TTCGTTTCTTTTTGCTCCCGCCACAATTTCTGTTGA
back to top