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Homology
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: A0A6H5KZ57_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ57_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 7.760e-12 Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query: 66 RRQRKYRGTMGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSR 227
RR R+Y + +SP DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV+R
Sbjct: 14 RRSRRYSRSP---ESPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWVAR 64
BLAST of mRNA_H-paniculata_contig2604.7108.1 vs. uniprot
Match: D7FMT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT5_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.770e-11 Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 3
Query: 66 RRQRKYRGTMGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWV 221
RR R+Y + ++P DCANIF GNMNPTSNK+DLE +F ++GKIVDIWV
Sbjct: 14 RRSRRYSKSP---EAPPSDCANIFCGNMNPTSNKHDLEHIFKRYGKIVDIWV 62
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 587 |
| Cds size | 393 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2604.7108.1 >prot_H-paniculata_contig2604.7108.1 ID=prot_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MGRHDSPSDDCANIFVGNMNPTSNKYDLEGMFAKFGKIVDIWVSRDLLGS SSACMPCRDVGVDISSKETTLLSSLPAHFLCCDELLQLGVTSAMALRCPL RFASLATTLVHSSFLCTLSFVSFCSRHNFC* back to topmRNA from alignment at H-paniculata_contig2604:9807..16945- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2604.7108.1 ID=mRNA_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7139bp|location=Sequence derived from alignment at H-paniculata_contig2604:9807..16945- (Halopteris paniculata Hal_grac_a_UBK monoicous) CGTGGTTATGTGCAGTTGTGTCCAGAGGTGCAAAGACCAAAGGGTCGGGT
GTGCCAAGGCGTGAGAGGAGGCAGAGGAAATACCGTGGGACCATGGGCAG
ACATGACTCGCCCTCCGATGACTGCGGTAAGATAAATAGTTGTTATGATA
GAGACCTTTGTCTGCGCCTTCTGGTCAACGGTTGGTGCTGTTTGCCACTA
GAAGGCATAAGTCAGTATTTTTCTGCTGGTTGTTTGACGATCAACCACAG
GCTCTAGCACATTGCAGCGGTAGACCACTCAAGTGGGTAGGGCTCTAGGC
TAGTGCGCGTGGAAACGGTGGGTGGAGCCGTGCAGATTGTCGATGTCTTC
TACAAGCATCTTGCATGCATATGGGGGGCGAAGTCATGGAAAAGAACGAG
GCCAGTTCTTGTGTGTGGTCAATTGTTTATTTTTGTGCATATCGTCATCT
GGTGTTGTGTTCGAACAAATCGTAAACTGTAGAGACGATGAGCTTTTATT
ACTAAATAGTGCCACAGCTTTCTGCATGGCCCGAGTTCTCCGGGATAGCG
AAGTGCATCCTTATGTGATGTATATAGTTATTAGGAGATAAGATGTTGGG
GTGTATTGTATTACACGTGCAGCTGGTACTGCATAGGTTCGTGGGAAAGT
AGAACCTTCTGCGGTGTTGGGGTGGGTTGGATCTAAGTTGCAAGTTTTCA
ACGAACTCGTTCAACTGACAGATAAGTAGCTCTCTTGGTACAAACCAGTG
GAGACCGTCTTTCAGTGGTGCAGGGGCTGGACGTGTGTCTCCATGGTTAT
TTACTGCACTTCCCAAACAGCGCAAATGGGCGACACAGGGTTGGGTAACT
AGTTGAAAAACACTAGATTGTGCACGAGACACTGCGTTGAAATTGTAGAG
GAAAGGATGTTTCGAGTCGCGCAGATGGGAGTAATACAGGCACTTGAGTC
ATGCGTCATACAGCCATTTTGAGGCTGGTGTAGGGGACTTTCCCCAAATA
CTATGTAATGGTGATCCTTTCTTAACTCTAGTACTCAGCATATTTTCTTG
TGCACAATCAACAAAATATCGTATTCAACTATTCTTTTGGACAAAGTTAT
AAACACGCCTTGGTGTCAGGACGAAAACCCTACATCACAGGGTCTAATCC
TATGAAGCATTGGCAGCATTTCTTACAGTGGTGGACCGACACGCATACAA
CGCTGTTGAAGCTAGAAATTACGATGCAGCCTTATAATAAAATAGCCGCG
ATGCCGCCCCCGGTCTGCCACGTGAAAAGTGACGGGTGCAAATTTGCAAT
TACAAATTCAATCGTGTAGGGTTGACAATTACACTATATTTCCTCTCTGC
CAGAAGTAGGATACTCGTGATTGCAGCGGCATTTAATATTTCGAACGTTT
TTACTGGAATACTTCGTGTTGTCTGGGTTCATCTCCAAAATTTGGTGTAA
ACCGGTTAACTTTTCAACCCCAAAAACATACGCTGCAAAAAAACGACTTT
TCGGGTGAATGAAGGCCTTAGTATTCTAAAATATTCGGAGGTTAAACCAA
AGAAGACGTAATATTCTATTCAAGAATGAACAATCAGAATTCAGAGATGT
TCTTGTGCCTCTGTAATAAAGACTACCCACACTTGCGGAACACAGCAACA
TTGAATCAAACGCAAAAAAAACGCTGCAGAAGTCAACATTCGGCTCGTGC
AGCGTTGCTAGCTACCTTCCCAGTGCTGTCTTCAGTCGTACGGTCATTAT
CCAAATATATTTGACACCCGCGCGCGTTTCACTCCTACGACCCCAACTGG
CTCAAGCCTGGCCCTCGCAGACCGTAGTCAATCCCTAAAACGAACTCAAA
AGGTGTTTGAATTGCGCGGTAGGTAGGCAGGTGGTGGCTTCTTGTAGAGG
GTGTTAAAAGATGCGGCCCACCACTAAAGAGCAGAGGTTGGCCCAAATTT
TGGTTCTGCAGAACTGCAAAAGTAAATGTAGAAATTTCGGCATAGGAAAC
TGAGTTAAACTTTTTGGGTGGTAAGAGGGTGGGGCTTTACCGGACTTTGT
AACGGCCAAAAGGTAGATTTGCCAATGATCATTGGAAATAATGACAAATA
CGTCGATAAGATGGAATGTCTTGATCAATTTTGGAAAGCTGGTCAATACA
TCTCAGGTGCCAAGTGTTTCGCCGTTTTTGAGATTTCATCTTGGATTCAG
TTGTGGGAGAATATGGTACCGTCTCTTCCCCGAACGGCCAAATAAGAAAC
AAGCGCTCCACAGGGGGGTGGTCTCATAAAAGGTGGGGCTTCAGCGAGGT
CCTCCTTTTTCGCATACCTCTGAATGCCCCTTACAGCACCTCTTTGGGTG
TAGGCAAGCTGATGGGCATCTTTGGATACTATGCAAGTGCTACTGCATGT
GTGTAGCGCAAGGAGCAGTCAATGCTGCAACACCATCTTCGCAGATACTC
ATATGTCCTCGTCTAGGGATGGATTCACAATCTACATATGTGGCATATAT
CCTTTTCTTAAATTTTTCGTTATTTTGACTGCGCAGACTCGCAGATAAAG
GAAATGATTCAAAAGTAGACTCTGTATATGCTCGGATGGATGCTCGTCTG
CTAGGTATCTCAAACAAAATAATATAAACCGGAGAGCTGGGAAAAACTTG
AGCACGGCACGTCACGTTTTTTTGCATTTCACAATCTGTTGTTGTATAAT
ACTGTAGTCACCATGATGCCGCCAGGATCCCTACACTTTTTGTGGCACCT
ACAAATCCACGCGCTCTCTGCCGGCGTGGCAATGCCCACCAAACTTTGGC
GGGGTTTGCTTCGGGCACTAGCTTCTTACGACATACGTTTTCACATAAAA
ATGCTACTGCTTCACTCTAATGCCAATGTCACACTAGTGCCCAGGTAGGT
CGGTGCGAAGAACAACTGATATCCCGCAAAATGCAAAACAAGTAGCCCGA
AGACCGGCAGCGCTGCACAAACCTGTTTTGACAACGACGCACAGACCAGC
GCATATAGACATGCGCTGAGAGTTGATCAGGTCAAGCCAACAACTTCCTG
CTAACCCGCATACAACAGAGTGATGCGGGGGTTGTATGGAACCATTGGTC
TTCTGTAGCTTGAAAACTGCCGGGGAGTTACTGCTAGTCATCGAAATCAT
AAACCAGACATGATCCAACAGTCATCAGTCTTTTCGGTCCGTACAGTCAG
TCAGCCTTGTATATGGGATTTACTACGCAGCCAACGGTGAGAGGTACAGT
CAGTTTCATATATATATAGGTTTTTGAGTGCAACATGCCCAACGGACTGA
TTCCAACCATCCCAAGAACAAATTATTTCGTCACGGTAGGCCTCTTTTGC
ACTCCCTCGCACAAGCGTTGATGGCATCGTGATATCATCCATATTTTCGC
GTGCCCCCCAGCAGGTGAATTCTTGCTCTTCAGTGTCGTACAGGCCGAGT
TCTGCATGTCGATAAATCACTTTTCGAAGACTCGGTACTTTGGCAAACAC
GGAATCCGATGACAATCGCTGCAAACGTGAGGATGTTTCGAGATCATGGA
ACCAATCACGAACTTAAAAGGCCCATGTCCAGGTTACCTTGTACCTCTAA
TGCGCTCATATATATGGGGGGGCACGGAGGGAAATATGAAAAATACAATG
ATCATAGTCTATTCTCGGGTTTGGGCTCTTGGTGGAGAGCTATAGCCGAA
TGGACCGTTAATACTCCGTAAAAAACAGATTTTTTTATCGCAAACCTGGT
CGTGGTCGGTTCTGTTCGACCTGACCTGGCTGGACCCCTAGAAAAAAATT
AAAGCGTTCAAAATTGCACAGTTGTGAGGAGCACTAGGCTTTCAGGAGAG
GCTGACCTCGAGAGAGCAACGCCGACTCCAGGGAGTTGATTCTCTCAGTT
TTGGGATGTAGTGCGAAGCCGGCACTTGGTCTTACTCTATTGTTTGTAGA
ATGTTTGTAGATGAACTGGTCAAGTACAGGGTCGGAGTGAGTTAAAACAA
ATGTGCTGATAATGGTAGATGAACGAACGACCTCTGGAGTTGTGTAGGGG
ACCGAGGATCATAACCGTCGGGAATATGCTCCCCACAAGTAGATATAGCC
TTGCGTTGCATCTTGTCTCGTTTTGATAAAAACGGTATTTGTAATAATCT
CCGGAGAAAAACTGGGATTGGACGTCGGGTAGGTCATACTCCAAGGCCGG
TCAAGAGTTGAAAGACCCAAATTGGCTTATTTGTCTTTCTAGTTACAAGA
TCTGTGCAAACTTTCAGCGTGTGATGCCTCATATTCACCTCGAAATCTTG
CGAAGAAGACTTTTGGATATAAAAGAGAAAGACAGTACTGCTCGTGATCC
TCGTCAAAAGAGACTTTGAGCTTCACCTGACGAAGAGTTTCTTGTTGTTG
GATCACTACTGTAGATATTCGCAGTATTCTCGAAGTGTCCTACTTAAAGG
CATGACGCGACCCTGAAGTGATCATGGGTGCTTGTTCTCATACCGAGTGG
TAAATCAAATGGCAGTCACTCTCGAATCCAGAAAAACCCTAGCCCGAAAG
CTACAAACTCGATTCATAAGTATAATCGACACTCTAGTGTACGCATGACG
ACGGTCTTGGGGCGGATTTTTTACTACTGCAATCACTACTCTTCAAAAAC
CCAGGGTGTGTAAGTTGTTTCCGAATTGCCTTCTCCCCTGTGTTCGCATA
TTTAACGTTTTCAAACCCAATTGTTTTGGAGTAATATGTGCCGGTGTGAA
ATATCTCGGATGTTTTCTGTTGTCTCTGTTGAATTTTATTGTGACGGAAG
AGTCGCCGTATCCATGAGATTACGTTGATGCCTTCCCATTGCTTCAGCTT
TTTACCCTTGGTGGTTTGCCAATACCATGCCTCTCTAAATCGCTAGGGAA
TTTTCGGACACCGCTAATAATTGTTATCGTGCTTCCTGAGCCAAGCTTTT
TTACGACCAAGTGATGTTGACACGGTGGGTGGATTCCTCAGCGGCCCTTA
TAGCTACGTAGTCACACTCAGTCAGAGCCTTCACACTTATTCGTCCTCGC
GGCGAGGTCGTCGCGTTTTCGCTGCTACTTTTGGTGCAGGTTGGACGTTG
TGTCACTACCTGGGACAATCGTTGGGAGACGACGCATGAACTGCCTTCAT
TTGTGCAGTAATATTTCGTCTTGTCAGTTTAGTGTGTTGGTTGCGGCGGC
AGGGATCGAGAGAGATGGGTACACGTGAAGGCAGTACAGTGCAGTTAGTA
CAGGCCGTCACATATGAGTTCAAGGGGATGTCAATATGTGCATTAGACTT
CAGCTTTATGAAACCGAACTGGGACTGTGGTACTTCCGATTACTCCACGT
CTGAAGCACCTTCAAGAAGAATATTTGTAAATATGGTAATGCCTCGAACC
GCGATCATACGATCCAATGTGAAACCTGGACCTAGATGTAGATAGGTATC
ACTGGCGTGCGAATGATTATCTGGATAGTCATTCCGGTACTGACAAGAAA
TGTTATTGTGCCGGTGGAAAATCTTGCGGAGATCTGTCGGTTGACGAGTT
TTTTCTACGGTCCAATGTCTCTGTTTTTGAGATTGTCGCCGTTTAAAAAC
ATTCACACTACCTCTAGGTTGTACGGTAGTCATCCCTCGCAACGCGAACA
CCCTGTGGTCAACGGGACTATGTTAGTAGCTGGCTGCGTGAGTGGTGAGG
TAGATTTAACGCTCAAAATGGGTTTCGTCTCTCTTCCAGCTTAGACATCA
AAACCCCTCAAACGTATCTATGTTCTGAGATGTTGATTGCGGGACGTGAC
AGTCATTGTCTAATGTGACGGTTCCATTCCCAATCCCCGGGTTTATGTAA
GGTAGTCTCAGTTGAGCTGGAAGCAGGAAGCACGGACCGTGTGACCACCC
CACCAACTTACAGACTTGTATCGAACCAGGGCTTTTACTGGCGTACAGCA
ATATACAGCTAATACAAGAGACCAGAGCATTGCCAAGGACTACTTCTACC
ACCCCAGCCGTACCGCACTGAGAGTATTGTGCTATATGGTCAGTAACAGG
AAACAATAACCTACGTGTGTGAGAAACTCCGCAATACAAACAGCAGATAT
CACATCTCTCTTCGAATAAAAAAAAATACTGGAGAAACACAACATTACAA
CAGCCGTACCATAGAAGGAAGTATGTTTTTCATCTTTAAATTGCTGAAGT
GCGTACAACATCCAAAAACCGAACGAGCTTTAGAGGGGATATATGCGGCC
ACTGACCGTTTGTCTGAAGTCTCCACATGAGACAATCTGCCATGTGCCTG
CCTATGAAGGGGTGGCGGAGTAAAAGTGGAGTATGACACTGCACGTTTAG
ATGATGAATAATTGCCTCGAGTGAAGTGTTGGGATCCTGCAGGTGATGTT
GGCGTTTACATGGAAGTGGTCTCCGTGCATCATACATTCATATTCGCGGA
GCCAGTCTTTTCTTTAATGTTAGAATATGCAGTCAACCATATACATTCAG
TATACTTTCAGTCCGGGGTCTCCTGCTTTTTTCAAATCGAGTTTTGAACA
TTGACATAAATGGTGGAATGTCCCCTGAAAAAACCCTACGTTAGTGAGTG
CATCTTCAATGAACATATCAACTAACCCATCCCACTGCTCCGTTTGACCG
CCCCTGCCTGGAACATGACACATGACAGCGAATATTTTCGTGGGCAACAT
GAACCCTACTTCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCG
GCAAAATTGTCGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCG
GCGTGCATGCCTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGAC
TACGCTCTTATCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGC
TGCAGTTGGGGGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTT
GCCTCCCTTGCCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTC
CTTCGTTTCTTTTTGCTCCCGCCACAATTTCTGTTGAGATCCTAAGGGTC
TTCTGAGCGGCAACACAAGTCATTAGACAGACCTTCAAAAGCTGTTCTGC
GTCTTATGTCCAACGCAAGCGAACAGTGACCTTCTCAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2604:9807..16945- >mRNA_H-paniculata_contig2604.7108.1 ID=mRNA_H-paniculata_contig2604.7108.1|Name=mRNA_H-paniculata_contig2604.7108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig2604:9807..16945- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCAGACATGACTCGCCCTCCGATGACTGCGATGGGCAGACATGACT CGCCCTCCGATGACTGCGCGAATATTTTCGTGGGCAACATGAACCCTACT TCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCGGCAAAATTGT CGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCGGCGTGCATGC CTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGACTACGCTCTTA TCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGCTGCAGTTGGG GGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTTGCCTCCCTTG CCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTCCTTCGTTTCT TTTTGCTCCCGCCACAATTTCTGTTGACGAATATTTTCGTGGGCAACATG AACCCTACTTCGAACAAGTACGACCTGGAAGGCATGTTCGCCAAGTTCGG CAAAATTGTCGACATCTGGGTGAGTCGCGATCTCTTGGGGTCCAGTTCGG CGTGCATGCCTTGCAGGGATGTCGGGGTGGATATTTCATCAAAGGAGACT ACGCTCTTATCTTCGTTGCCAGCGCACTTTTTGTGTTGTGACGAGCTGCT GCAGTTGGGGGTTACGTCAGCTATGGCATTGCGTTGCCCTCTTCGATTTG CCTCCCTTGCCACCACCCTCGTTCACTCCTCTTTCTTGTGTACCTTGTCC TTCGTTTCTTTTTGCTCCCGCCACAATTTCTGTTGA back to top
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