mRNA_H-paniculata_contig26000.7099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26000.7099.1
Unique NamemRNA_H-paniculata_contig26000.7099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26000.7099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26000contigH-paniculata_contig26000:882..3523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003420.1
Exons1
Model size2642
Cds size1740
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26000.7099.1prot_H-paniculata_contig26000.7099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26000 1448..3187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.8960657-UTR-H-paniculata_contig26000:881..14471622929775.8960657-UTR-H-paniculata_contig26000:881..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26000 882..1447 +
1691481006.0287411-UTR-H-paniculata_contig26000:881..14471691481006.0287411-UTR-H-paniculata_contig26000:881..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26000 882..1447 +
1622929775.9377644-UTR-H-paniculata_contig26000:3187..35231622929775.9377644-UTR-H-paniculata_contig26000:3187..3523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26000 3188..3523 +
1691481006.0492768-UTR-H-paniculata_contig26000:3187..35231691481006.0492768-UTR-H-paniculata_contig26000:3187..3523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26000 3188..3523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.9167123-CDS-H-paniculata_contig26000:1447..31871622929775.9167123-CDS-H-paniculata_contig26000:1447..3187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26000 1448..3187 +
1691481006.0389435-CDS-H-paniculata_contig26000:1447..31871691481006.0389435-CDS-H-paniculata_contig26000:1447..3187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26000 1448..3187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26000.7099.1

>prot_H-paniculata_contig26000.7099.1 ID=prot_H-paniculata_contig26000.7099.1|Name=mRNA_H-paniculata_contig26000.7099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=580bp
MKAAAASLLEIMPSLPRVRRPCTAGQEELAVGLSERNAGDYGCEAAGSAA
PKVFLAGGDSFNVGGCYGADVMATRVACAVSSLSSRGGLRVFGEGSRGEG
RTRGGRSAGNGRDLVIVESAERKSAAAIATEIEQAGAIAAAAAGVVMAPI
LNAADNELSSFTRRDDGNHGDIASGSLLFQERVPLLHAEHSEATKAVISQ
VRPRFKVESHAAVDGRTGGGKIRRYAYRCANNALLGLEDSPEELRARWLE
GELSYFAAAAAPAAVTASSAQAVGVTSATSATATTASTRKPQERVPLLHA
ADVSRLLASWDHRTGSWGSLEGGRLESGRRASAAGASVACMDCFVEMRPS
AQRANTSATFATDSIGSTLSAVMEADPVSSGGGDDADKDGGGRSGRVTFA
ENTTFFTSGRLGSAGSSQKKDRRRRRSHHQRRQSSENSSFASLFRQKQEQ
ARILSSSSRMSFSAAKQSQKEEVDDDDDDQDCDDQPLEVAVIPRPAGDGV
EPLLRVIVGRVSALRCRGGGKGTGVSGSGEGAGGRGEMAAPPVIVLQVSV
VGARAVGAGVTLGFAEALRRRLLAAGPDV*
back to top

mRNA from alignment at H-paniculata_contig26000:882..3523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26000.7099.1 ID=mRNA_H-paniculata_contig26000.7099.1|Name=mRNA_H-paniculata_contig26000.7099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2642bp|location=Sequence derived from alignment at H-paniculata_contig26000:882..3523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTCTCGACCTGGACGCCAAGGAACATGATGAGGGAGAAGATTCATCG
CGATATTCCGTCAGTTTCGTGGTGGATGTCAAGTCCCTACAGGCGGAACT
AGACCGTCTTCGGCGTGCAGCAGTAGCGCTGACAGCTAAAGAGGGAAACG
TTGGTAGGGTTTCCGCGCTATCGTCATCATCCACTCTCTCAGCAGTACCC
ACAAATAATCATAATCTTGATAATACTAGTAGTACACGCAGGAGAAGCAG
CGGCGGGGGGTCCCGGTTGTCATTCCCGCGGGGCTTGTTCCGCAATGGCG
CCGGCAGCGGTTCGTCGGATAGCAATATTTGGCCACTAGGCCGCACTGGT
GGAGATGCAACAACAACGACCGCGGTCAGCGCCGACGAAGACTGCTATGA
TGGAGCAGGCGAAGTTGCCGCCGGCGCTAGTACCCGATCTACAGAAGCAT
TTGGATCGGCGGCAAGAAACAGTTTTTCGTCCTCGGTAAATACCGGCCCC
GCACCCGCCACCTCCGGCGACACAGCTGGGGTAGCACCCCCTTCTGTCAC
CGTTCTACACCTGGTCATGAAGGCCGCAGCGGCATCGCTGCTCGAGATTA
TGCCGTCCCTCCCACGCGTCCGTCGTCCTTGCACAGCAGGGCAAGAGGAG
CTAGCGGTAGGATTATCGGAAAGAAACGCTGGAGATTATGGTTGTGAGGC
AGCTGGTTCTGCCGCTCCCAAGGTCTTCCTTGCTGGTGGTGACTCGTTTA
ATGTTGGCGGATGCTACGGCGCGGACGTGATGGCGACCAGAGTAGCCTGC
GCCGTGTCCAGCCTAAGCAGCAGGGGCGGCTTACGCGTGTTCGGGGAGGG
CAGTCGAGGCGAGGGGAGGACGAGAGGTGGTCGGAGCGCGGGTAACGGCC
GCGACCTTGTGATTGTGGAGTCGGCCGAAAGAAAATCGGCTGCAGCAATC
GCGACTGAAATTGAGCAAGCGGGGGCGATCGCGGCGGCGGCGGCGGGTGT
GGTAATGGCACCCATCCTGAATGCCGCTGATAATGAATTGTCGTCTTTTA
CTCGTCGTGACGATGGCAACCATGGTGATATCGCTAGTGGTTCGCTGCTG
TTTCAGGAGAGGGTTCCGCTGTTGCACGCCGAACACAGTGAGGCCACAAA
GGCCGTCATTTCGCAAGTACGACCGCGGTTCAAGGTAGAGTCTCACGCGG
CGGTAGATGGTAGGACGGGTGGCGGCAAGATCAGGAGATACGCCTACAGG
TGTGCCAACAACGCCCTTCTGGGCCTGGAAGACAGCCCTGAAGAGCTCCG
CGCGAGATGGCTCGAAGGGGAATTGTCATACTTCGCAGCAGCAGCAGCTC
CAGCTGCTGTTACTGCCAGCAGTGCGCAAGCCGTCGGTGTAACGAGCGCC
ACCTCCGCCACCGCAACAACGGCGTCCACCCGGAAACCACAAGAACGCGT
CCCCCTCTTGCACGCTGCCGACGTTTCGAGACTACTAGCAAGCTGGGATC
ATCGGACGGGGTCTTGGGGTTCTCTTGAGGGGGGACGTTTGGAGAGTGGG
AGAAGAGCTTCTGCAGCCGGCGCCTCGGTGGCCTGTATGGATTGTTTCGT
GGAGATGCGACCTAGCGCGCAGCGTGCGAATACGTCTGCTACTTTTGCAA
CTGATTCTATCGGGTCGACACTGTCTGCGGTGATGGAGGCGGACCCCGTT
TCGAGTGGTGGCGGTGATGATGCTGATAAGGACGGTGGTGGTCGGTCAGG
CAGAGTTACGTTCGCCGAGAATACCACTTTTTTCACAAGTGGACGGCTTG
GTAGTGCCGGAAGTTCCCAGAAGAAAGATCGCCGTCGGCGTCGGAGCCAT
CATCAGCGCCGTCAATCTTCGGAGAATTCATCTTTTGCCTCTCTCTTTCG
TCAGAAACAAGAGCAAGCAAGGATATTATCGTCCTCATCCAGGATGTCTT
TTTCCGCTGCCAAGCAAAGTCAAAAAGAGGAAGTCGATGATGATGATGAC
GACCAGGACTGTGACGACCAGCCCCTCGAAGTCGCCGTGATTCCACGCCC
CGCGGGTGACGGAGTAGAGCCGCTTCTAAGGGTCATCGTGGGCCGAGTTA
GCGCCTTAAGGTGTAGAGGTGGTGGAAAGGGGACAGGAGTAAGTGGCAGT
GGGGAGGGCGCGGGCGGTCGAGGTGAAATGGCGGCGCCACCGGTTATTGT
GCTGCAAGTATCGGTTGTCGGAGCCCGGGCGGTTGGGGCCGGCGTTACGT
TGGGATTCGCTGAGGCGCTGAGACGTCGACTGCTCGCTGCTGGTCCTGAC
GTGTAGAGGATGTGATACGAAGGGTGGAGAATGTGCTGTCGTGGTGTTGT
TACATCTTGTTTTGCTTGATATGAGGTTTTTTAGTCGTGACTGAGTTTTG
TTGATTCTCCATAACTGCTGCTGTCTTACCAACACTGCCGGTATCCGAGT
CTACTGCCTGCATACTGTTAATAAGTAGCAATGTGATGAAAAGTACTAGG
AGACTATGTCGTGGTAATTCTGATTTATTATCAAGTGAGATGAGAACACG
ATGCTCCCGGGAGAGACTAGCTCTCGAGGGGACACCGCCTGCTCTATGCG
GGTCGGTTCTAGGTCTTGGGATGTAGTGCGGAGCAAGCACTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26000:882..3523+

>mRNA_H-paniculata_contig26000.7099.1 ID=mRNA_H-paniculata_contig26000.7099.1|Name=mRNA_H-paniculata_contig26000.7099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3480bp|location=Sequence derived from alignment at H-paniculata_contig26000:882..3523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCCGCAGCGGCATCGCTGCTCGAGATTATGCCGTCCCTCCCACG
CGTCCGTCGTCCTTGCACAGCAGGGCAAGAGGAGCTAGCGGTAGGATTAT
CGGAAAGAAACGCTGGAGATTATGGTTGTGAGGCAGCTGGTTCTGCCGCT
CCCAAGGTCTTCCTTGCTGGTGGTGACTCGTTTAATGTTGGCGGATGCTA
CGGCGCGGACGTGATGGCGACCAGAGTAGCCTGCGCCGTGTCCAGCCTAA
GCAGCAGGGGCGGCTTACGCGTGTTCGGGGAGGGCAGTCGAGGCGAGGGG
AGGACGAGAGGTGGTCGGAGCGCGGGTAACGGCCGCGACCTTGTGATTGT
GGAGTCGGCCGAAAGAAAATCGGCTGCAGCAATCGCGACTGAAATTGAGC
AAGCGGGGGCGATCGCGGCGGCGGCGGCGGGTGTGGTAATGGCACCCATC
CTGAATGCCGCTGATAATGAATTGTCGTCTTTTACTCGTCGTGACGATGG
CAACCATGGTGATATCGCTAGTGGTTCGCTGCTGTTTCAGGAGAGGGTTC
CGCTGTTGCACGCCGAACACAGTGAGGCCACAAAGGCCGTCATTTCGCAA
GTACGACCGCGGTTCAAGGTAGAGTCTCACGCGGCGGTAGATGGTAGGAC
GGGTGGCGGCAAGATCAGGAGATACGCCTACAGGTGTGCCAACAACGCCC
TTCTGGGCCTGGAAGACAGCCCTGAAGAGCTCCGCGCGAGATGGCTCGAA
GGGGAATTGTCATACTTCGCAGCAGCAGCAGCTCCAGCTGCTGTTACTGC
CAGCAGTGCGCAAGCCGTCGGTGTAACGAGCGCCACCTCCGCCACCGCAA
CAACGGCGTCCACCCGGAAACCACAAGAACGCGTCCCCCTCTTGCACGCT
GCCGACGTTTCGAGACTACTAGCAAGCTGGGATCATCGGACGGGGTCTTG
GGGTTCTCTTGAGGGGGGACGTTTGGAGAGTGGGAGAAGAGCTTCTGCAG
CCGGCGCCTCGGTGGCCTGTATGGATTGTTTCGTGGAGATGCGACCTAGC
GCGCAGCGTGCGAATACGTCTGCTACTTTTGCAACTGATTCTATCGGGTC
GACACTGTCTGCGGTGATGGAGGCGGACCCCGTTTCGAGTGGTGGCGGTG
ATGATGCTGATAAGGACGGTGGTGGTCGGTCAGGCAGAGTTACGTTCGCC
GAGAATACCACTTTTTTCACAAGTGGACGGCTTGGTAGTGCCGGAAGTTC
CCAGAAGAAAGATCGCCGTCGGCGTCGGAGCCATCATCAGCGCCGTCAAT
CTTCGGAGAATTCATCTTTTGCCTCTCTCTTTCGTCAGAAACAAGAGCAA
GCAAGGATATTATCGTCCTCATCCAGGATGTCTTTTTCCGCTGCCAAGCA
AAGTCAAAAAGAGGAAGTCGATGATGATGATGACGACCAGGACTGTGACG
ACCAGCCCCTCGAAGTCGCCGTGATTCCACGCCCCGCGGGTGACGGAGTA
GAGCCGCTTCTAAGGGTCATCGTGGGCCGAGTTAGCGCCTTAAGGTGTAG
AGGTGGTGGAAAGGGGACAGGAGTAAGTGGCAGTGGGGAGGGCGCGGGCG
GTCGAGGTGAAATGGCGGCGCCACCGGTTATTGTGCTGCAAGTATCGGTT
GTCGGAGCCCGGGCGGTTGGGGCCGGCGTTACGTTGGGATTCGCTGAGGC
GCTGAGACGTCGACTGCTCGCTGCTGGTCCTGACGTGTAGATGAAGGCCG
CAGCGGCATCGCTGCTCGAGATTATGCCGTCCCTCCCACGCGTCCGTCGT
CCTTGCACAGCAGGGCAAGAGGAGCTAGCGGTAGGATTATCGGAAAGAAA
CGCTGGAGATTATGGTTGTGAGGCAGCTGGTTCTGCCGCTCCCAAGGTCT
TCCTTGCTGGTGGTGACTCGTTTAATGTTGGCGGATGCTACGGCGCGGAC
GTGATGGCGACCAGAGTAGCCTGCGCCGTGTCCAGCCTAAGCAGCAGGGG
CGGCTTACGCGTGTTCGGGGAGGGCAGTCGAGGCGAGGGGAGGACGAGAG
GTGGTCGGAGCGCGGGTAACGGCCGCGACCTTGTGATTGTGGAGTCGGCC
GAAAGAAAATCGGCTGCAGCAATCGCGACTGAAATTGAGCAAGCGGGGGC
GATCGCGGCGGCGGCGGCGGGTGTGGTAATGGCACCCATCCTGAATGCCG
CTGATAATGAATTGTCGTCTTTTACTCGTCGTGACGATGGCAACCATGGT
GATATCGCTAGTGGTTCGCTGCTGTTTCAGGAGAGGGTTCCGCTGTTGCA
CGCCGAACACAGTGAGGCCACAAAGGCCGTCATTTCGCAAGTACGACCGC
GGTTCAAGGTAGAGTCTCACGCGGCGGTAGATGGTAGGACGGGTGGCGGC
AAGATCAGGAGATACGCCTACAGGTGTGCCAACAACGCCCTTCTGGGCCT
GGAAGACAGCCCTGAAGAGCTCCGCGCGAGATGGCTCGAAGGGGAATTGT
CATACTTCGCAGCAGCAGCAGCTCCAGCTGCTGTTACTGCCAGCAGTGCG
CAAGCCGTCGGTGTAACGAGCGCCACCTCCGCCACCGCAACAACGGCGTC
CACCCGGAAACCACAAGAACGCGTCCCCCTCTTGCACGCTGCCGACGTTT
CGAGACTACTAGCAAGCTGGGATCATCGGACGGGGTCTTGGGGTTCTCTT
GAGGGGGGACGTTTGGAGAGTGGGAGAAGAGCTTCTGCAGCCGGCGCCTC
GGTGGCCTGTATGGATTGTTTCGTGGAGATGCGACCTAGCGCGCAGCGTG
CGAATACGTCTGCTACTTTTGCAACTGATTCTATCGGGTCGACACTGTCT
GCGGTGATGGAGGCGGACCCCGTTTCGAGTGGTGGCGGTGATGATGCTGA
TAAGGACGGTGGTGGTCGGTCAGGCAGAGTTACGTTCGCCGAGAATACCA
CTTTTTTCACAAGTGGACGGCTTGGTAGTGCCGGAAGTTCCCAGAAGAAA
GATCGCCGTCGGCGTCGGAGCCATCATCAGCGCCGTCAATCTTCGGAGAA
TTCATCTTTTGCCTCTCTCTTTCGTCAGAAACAAGAGCAAGCAAGGATAT
TATCGTCCTCATCCAGGATGTCTTTTTCCGCTGCCAAGCAAAGTCAAAAA
GAGGAAGTCGATGATGATGATGACGACCAGGACTGTGACGACCAGCCCCT
CGAAGTCGCCGTGATTCCACGCCCCGCGGGTGACGGAGTAGAGCCGCTTC
TAAGGGTCATCGTGGGCCGAGTTAGCGCCTTAAGGTGTAGAGGTGGTGGA
AAGGGGACAGGAGTAAGTGGCAGTGGGGAGGGCGCGGGCGGTCGAGGTGA
AATGGCGGCGCCACCGGTTATTGTGCTGCAAGTATCGGTTGTCGGAGCCC
GGGCGGTTGGGGCCGGCGTTACGTTGGGATTCGCTGAGGCGCTGAGACGT
CGACTGCTCGCTGCTGGTCCTGACGTGTAG
back to top