mRNA_H-paniculata_contig25993.7094.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25993.7094.1
Unique NamemRNA_H-paniculata_contig25993.7094.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.190e-31
Identity = 87/254 (34.25%), Postives = 132/254 (51.97%), Query Frame = 2 
Query:  131 RGIARELAGLTVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTWYGEGKKAGKGMATKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVNIALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQRLDEASATEENLEQSTLADGSQGVGNLNVSRLPTPREAM--KTLEQFIRQLTLEGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAF 886
            R + +++A L   IP    +LP  +  ++ L E +R    W   L+ W  +GK+ GKG AT++ R+FFLC +D SLAECG  G+GY +     W  K +PFA+    + +IAL+   GL+IP        G     ALS   E++  +  ++  S   +RLD   A  E L Q   A G+Q          P+P +    +TL++ I+   ++G++  S   PF  FD  M LVD+  +GE W+WVR KN+  F
Sbjct: 1005 RSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLGTVAGGALSKFAEESLNSGIESVASIAGERLDGGRA--EGLPQGAGAHGAQ-------QGWPSPVQGFTYETLKEVIKSFEVDGMRGRS---PFPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
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BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.880e-26
Identity = 93/283 (32.86%), Postives = 130/283 (45.94%), Query Frame = 2 
Query:  104 LEPHRSSHLRGIARELAGLTVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTW-------------------YGEGKKAGKGMATKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVNIALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQRLD--EASATEENLEQSTL-ADGSQGVGNLNVSRLPTPREAMKTLEQFIRQLTLEGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAF 886
            L P     L G+ARE+A L   IP    +LP R      L+E +R    W   LK W                    G  K   +G+ T+E RLFFLCG D SLAECG DG+GY ++    WV K  P AK  L + +IALK   GL++  +      G S D  +S+ VED   A  +   S    RLD  + S   E L  + +  DG Q +       +P        L++ I+   ++  ++    +P   FDTTM +VD+   G  W+WVR +N+  F
Sbjct:  868 LRPTERDILVGVAREVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSED--MSAFVEDALSAGIEGTTSKAGNRLDRLQNSGPSERLPHAGVRGDGMQTL-------IPLEGFDYDKLKEVIKSFEVDRTQRDGSRYP--SFDTTMNIVDRRGHGVEWAWVRNRNIDQF 1136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25993.7094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU35_ECTSI1.190e-3134.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI1.880e-2632.86LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25993contigH-paniculata_contig25993:1493..3223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue9.1e-31
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1518
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25993.7094.1prot_H-paniculata_contig25993.7094.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25993 1503..2600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.9174008-UTR-H-paniculata_contig25993:1492..15021622929774.9174008-UTR-H-paniculata_contig25993:1492..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25993 1493..1502 +
1691481005.5692146-UTR-H-paniculata_contig25993:1492..15021691481005.5692146-UTR-H-paniculata_contig25993:1492..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25993 1493..1502 +
1622929774.96788-UTR-H-paniculata_contig25993:2600..32231622929774.96788-UTR-H-paniculata_contig25993:2600..3223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25993 2601..3223 +
1691481005.6008914-UTR-H-paniculata_contig25993:2600..32231691481005.6008914-UTR-H-paniculata_contig25993:2600..3223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25993 2601..3223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929774.9315946-CDS-H-paniculata_contig25993:1502..21831622929774.9315946-CDS-H-paniculata_contig25993:1502..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25993 1503..2183 +
1691481005.5825498-CDS-H-paniculata_contig25993:1502..21831691481005.5825498-CDS-H-paniculata_contig25993:1502..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25993 1503..2183 +
1622929774.9508028-CDS-H-paniculata_contig25993:2396..26001622929774.9508028-CDS-H-paniculata_contig25993:2396..2600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25993 2397..2600 +
1691481005.590695-CDS-H-paniculata_contig25993:2396..26001691481005.590695-CDS-H-paniculata_contig25993:2396..2600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25993 2397..2600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25993.7094.1

>prot_H-paniculata_contig25993.7094.1 ID=prot_H-paniculata_contig25993.7094.1|Name=mRNA_H-paniculata_contig25993.7094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
MAKDVKDVVESQKTMLETVASIEDQVKEMRRLEPHRSSHLRGIARELAGL
TVRIPSHAVLLPPRQDESQVLTEDERGEANWRGRLKTWYGEGKKAGKGMA
TKEFRLFFLCGHDNSLAECGVDGKGYRIETHRKWVTKCLPFAKALLVVVN
IALKNFAGLSIPIEGIAGVGGQSLDKALSSMVEDTAEALADNACSAGVQR
LDEASATEENLEQSTLADGSQGVGNLNVSRLPTPREAMKTLEQFIRQLTL
EGLKKSSRSHPFLCFDTTMQLVDKAQKGEVWSWVREKNVRAFTS*
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mRNA from alignment at H-paniculata_contig25993:1493..3223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25993.7094.1 ID=mRNA_H-paniculata_contig25993.7094.1|Name=mRNA_H-paniculata_contig25993.7094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1731bp|location=Sequence derived from alignment at H-paniculata_contig25993:1493..3223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTATCTATGGCGAAGGATGTCAAGGACGTGGTAGAGTCCCAAAAGA
CTATGTTGGAGACTGTGGCGAGTATAGAAGATCAGGTGAAGGAGATGAGA
CGTTTGGAACCGCATCGGTCTTCCCACCTGCGAGGGATTGCGAGGGAATT
AGCTGGCCTGACGGTTCGCATTCCAAGCCATGCGGTGCTCTTACCTCCGC
GGCAAGACGAGTCTCAAGTGCTGACAGAGGATGAAAGAGGGGAAGCAAAC
TGGAGGGGGAGGTTGAAGACGTGGTATGGTGAGGGCAAGAAGGCCGGGAA
AGGCATGGCAACGAAAGAGTTTAGACTGTTCTTTCTCTGTGGACACGACA
ACAGCCTTGCAGAATGTGGGGTGGACGGAAAGGGATACCGGATAGAGACT
CACCGAAAGTGGGTGACAAAATGTCTCCCGTTCGCTAAGGCCCTACTGGT
CGTTGTAAACATCGCGCTGAAGAACTTCGCAGGGTTAAGCATTCCCATTG
AAGGGATCGCAGGGGTAGGTGGGCAATCGTTGGACAAAGCCCTCTCATCG
ATGGTGGAGGATACGGCAGAAGCATTGGCAGACAATGCTTGTTCTGCTGG
GGTACAGAGGCTAGACGAAGCAAGTGCGACCGAGGAAAATCTGGAACAGA
GCACCCTTGCGGACGGCTCTCAAGGCGTGGGCAATTTGAATGTAAGTGAC
ACTGTGTACGATGGGTGTTGGACGCAGCGATTTGCCCACGTAGCGAAACA
AACCTTCCCCCCGATACAACGATAGTAGTAACTTGACACCCGGTGGTAAC
TCCAGCTGCAGGTAAGATTTGTTCGCACCACCACACTGTGGATTTTGAAT
GCTCTAAACCTTGCGTCTCTGACCACAACTTTGGTGTAACCAATGCCCCC
ACAGGTCAGCCGATTGCCCACGCCAAGGGAAGCAATGAAAACGCTGGAGC
AATTTATACGGCAACTCACCCTTGAAGGGCTCAAGAAGAGCAGCCGCAGC
CACCCGTTTTTGTGCTTTGACACCACAATGCAATTGGTTGACAAAGCACA
AAAAGGAGAGGTGTGGTCGTGGGTGAGAGAGAAGAACGTTCGGGCCTTCA
CATCCTGAACTCGTGAGTGTGGACATCCGATTACTCGCCACGGCAGCGTC
GGGTGTCCCAGCTACGGCGCACCGAAGAGCGATTGGCGGCTAGTTTCTTG
CAGGATTGTACCTACAACATTTTTGCGTCGATCGGAGATAGTAGTTAGTC
GTGTGTTTCGGAAGACAGTGAGCACCCGTTCTAGATGTAGCGGTGCCGTA
CAGTAGGGTGCGGAGTAGGAAAACATGGAGGATTGAATTCCGGTCCGAGA
TGCAACTGTTTGAGCTGAGCACTTGCTCGCGATATTAGTAGTAGGCGAAA
GATTTGGCAAATGTGAGTTAAGACTGGTATGGATTGTGGGCCGCTATGTT
GACAAGGCCAGAAGTGGTGAGCAAACTGTATCCGATATGTATGTAATAGT
GTTGGTGTCGCTAAACGTGCATTGTATATCGCTTGAGAGTAAAACTACCG
TGTGCGCGTGCCACTACTAACAGTAGGCAACTATCAAACGCGATGAACTA
CATGGCCCTGGTCGGTAGTACCCTCTGTGCATGGCCCTGGTTGGTACCCT
CTGTGTCGAACCATCTCTTCGAGTGAAAGCAAATCGAGCGATACCAGATA
GGCGATACCCCGAAGAATCGAAAGAGCTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig25993:1493..3223+

>mRNA_H-paniculata_contig25993.7094.1 ID=mRNA_H-paniculata_contig25993.7094.1|Name=mRNA_H-paniculata_contig25993.7094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig25993:1493..3223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGATGTCAAGGACGTGGTAGAGTCCCAAAAGACTATGTTGGA
GACTGTGGCGAGTATAGAAGATCAGGTGAAGGAGATGAGACGTTTGGAAC
CGCATCGGTCTTCCCACCTGCGAGGGATTGCGAGGGAATTAGCTGGCCTG
ACGGTTCGCATTCCAAGCCATGCGGTGCTCTTACCTCCGCGGCAAGACGA
GTCTCAAGTGCTGACAGAGGATGAAAGAGGGGAAGCAAACTGGAGGGGGA
GGTTGAAGACGTGGTATGGTGAGGGCAAGAAGGCCGGGAAAGGCATGGCA
ACGAAAGAGTTTAGACTGTTCTTTCTCTGTGGACACGACAACAGCCTTGC
AGAATGTGGGGTGGACGGAAAGGGATACCGGATAGAGACTCACCGAAAGT
GGGTGACAAAATGTCTCCCGTTCGCTAAGGCCCTACTGGTCGTTGTAAAC
ATCGCGCTGAAGAACTTCGCAGGGTTAAGCATTCCCATTGAAGGGATCGC
AGGGGTAGGTGGGCAATCGTTGGACAAAGCCCTCTCATCGATGGTGGAGG
ATACGGCAGAAGCATTGGCAGACAATGCTTGTTCTGCTGGGGTACAGAGG
CTAGACGAAGCAAGTGCGACCGAGGAAAATCTGGAACAGAGCACCCTTGC
GGACGGCTCTCAAGGCGTGGGCAATTTGAATATGGCGAAGGATGTCAAGG
ACGTGGTAGAGTCCCAAAAGACTATGTTGGAGACTGTGGCGAGTATAGAA
GATCAGGTGAAGGAGATGAGACGTTTGGAACCGCATCGGTCTTCCCACCT
GCGAGGGATTGCGAGGGAATTAGCTGGCCTGACGGTTCGCATTCCAAGCC
ATGCGGTGCTCTTACCTCCGCGGCAAGACGAGTCTCAAGTGCTGACAGAG
GATGAAAGAGGGGAAGCAAACTGGAGGGGGAGGTTGAAGACGTGGTATGG
TGAGGGCAAGAAGGCCGGGAAAGGCATGGCAACGAAAGAGTTTAGACTGT
TCTTTCTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGGTGGACGGA
AAGGGATACCGGATAGAGACTCACCGAAAGTGGGTGACAAAATGTCTCCC
GTTCGCTAAGGCCCTACTGGTCGTTGTAAACATCGCGCTGAAGAACTTCG
CAGGGTTAAGCATTCCCATTGAAGGGATCGCAGGGGTAGGTGGGCAATCG
TTGGACAAAGCCCTCTCATCGATGGTGGAGGATACGGCAGAAGCATTGGC
AGACAATGCTTGTTCTGCTGGGGTACAGAGGCTAGACGAAGCAAGTGCGA
CCGAGGAAAATCTGGAACAGAGCACCCTTGCGGACGGCTCTCAAGGCGTG
GGCAATTTGAATGTCAGCCGATTGCCCACGCCAAGGGAAGCAATGAAAAC
GCTGGAGCAATTTATACGGCAACTCACCCTTGAAGGGCTCAAGAAGAGCA
GCCGCAGCCACCCGTTTTTGTGCTTTGACACCACAATGCAATTGGTTGAC
AAAGCACAAAAAGGAGAGGTGTGGTCGTGGGTGAGAGAGAAGAACGTTCG
GGCCTTCACATCCTGAGTCAGCCGATTGCCCACGCCAAGGGAAGCAATGA
AAACGCTGGAGCAATTTATACGGCAACTCACCCTTGAAGGGCTCAAGAAG
AGCAGCCGCAGCCACCCGTTTTTGTGCTTTGACACCACAATGCAATTGGT
TGACAAAGCACAAAAAGGAGAGGTGTGGTCGTGGGTGAGAGAGAAGAACG
TTCGGGCCTTCACATCCTGA
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