mRNA_H-paniculata_contig2592.7070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2592.7070.1
Unique NamemRNA_H-paniculata_contig2592.7070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: D7FT92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT92_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.420e-61
Identity = 202/245 (82.45%), Postives = 219/245 (89.39%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQV 735
            MEE+DELVPHPDS+G+LNLT              KREL+ LNVSFNNIEYLPPELGDL+LL+ELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GAVITLEE+DCAGNADL+VVPA LHSDT  ILWVCRLH+ HA ++E+L+ LNDALE KAQKIEETKLRLKEEI++LQEQRR LLKERPGAYLAAK++V
Sbjct:    1 MEEVDELVPHPDSNGLLNLT--------------KRELIVLNVSFNNIEYLPPELGDLVLLKELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVITLEELDCAGNADLDVVPAALHSDTAMILWVCRLHKDHAEDAEQLQRLNDALENKAQKIEETKLRLKEEIRILQEQRRALLKERPGAYLAAKRKV 231
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A7S2V5X2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5X2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.160e-22
Identity = 138/246 (56.10%), Postives = 168/246 (68.29%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQVI 738
            MEE D+L+ HPD  G L+L HR WV LD  +WTM  EL  LN+SFNNI  +PP +GDL LLRELD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          I+ +GN +L  +P  L  +T+ I+W+C LH+ H     +L+  N  LE +A+ + E+K+ L + I  L+ +   L ++ P  YL  K + +
Sbjct:    1 MEEFDDLIQHPDDKGCLDLAHRGWVTLDDAVWTMNYELFILNISFNNITAVPPRIGDLNLLRELDCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLENCPLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINVSGNPELRTIPKELQDNTQLIVWICALHKDHRDRMRQLEQANYELENQARFMTESKMILLDNIGKLKSKNEELQEQMPDTYLHYKAKAL 246
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BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A836CI12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI12_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-21
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLREL 192
            MEE DEL+PHPD  G L+LTHR+WV LDSV+WT  +ELL LN++FNNIE LPPELG L LLR+L
Sbjct:    1 MEEYDELIPHPDKAGCLDLTHRSWVELDSVLWTFSKELLVLNIAFNNIERLPPELGHLTLLRDL 64
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BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A8J2SRS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRS9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.360e-20
Identity = 146/236 (61.86%), Postives = 176/236 (74.58%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAV-ITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERP 705
            MEE DEL+P PD DG L L+HRAW  +D V+WTM  E+  L++++N + ++ PELGDL LLRELD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +  V  +LE I+ AGN  L+++P  +  DTE ILWV RLHR + VES+ + +  D LE  ++   E    L+ E++ + E R  LL+  P
Sbjct:    1 MEEFDELMPTPDEDGRLELSHRAWQHVDEVVWTMGLEITALSLAYNRLAHIAPELGDLKLLRELDCSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLADVSASLEHINLAGNPRLDMIPKKIRGDTELILWVLRLHRDNEVESQYVLSCIDTLEGISRGATERHRELRLELKKVDEDRLELLRNLP 236
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: F0Y9Z7_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Z7_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 6.350e-17
Identity = 141/252 (55.95%), Postives = 183/252 (72.62%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVI-TLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQVILRDHV 753
            MEE DEL+P PD++G L L+HRAW+ +D ++WTM  E++ L++++N ++++ PELGDL LL+E D   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  +  TL  I+   N  L+++P  +  DT  I+WVC+LHR + +E + +    D LE  ++  +E   +LK E++   E R  LL+  P     A   V++ DH+
Sbjct:    1 MEEFDELLPTPDAEGKLELSHRAWLDVDEIVWTMGLEVITLSLAYNRLKHIAPELGDLKLLKEFDCSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLADISKTLVTINLRSNPRLDMIPKKIRGDTRLIMWVCKLHRENEMECQFVLGSIDQLEALSRGAQERHKKLKSELKRYDEDRLELLRNLPTGIDRA---VVVYDHL 249
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BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A7R9YGJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGJ9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.000e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELD 195
            MEE D+L+P PD+DG  +L HR W ++DSVIWT+  ELL L++SFN IE LPP++G L LLR L+
Sbjct:    1 MEEFDDLIPQPDADGSCDLAHRGWKVVDSVIWTLGAELLHLDLSFNRIEALPPDVGGLFLLRTLN 65
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A8K1C3I3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3I3_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 6.370e-15
Identity = 130/248 (52.42%), Postives = 165/248 (66.53%), Query Frame = 1 
Query:    1 MEEI--DELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQVI 738
            MEE   D LVP  D++G+L+L  + WV LD ++W+  + LL L VS N + ++PP++ +L+LLREL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            X  XXXXXXXXXXXXXXXXXXXXXXXXXX       LEE+ C  N  L  +P  L  +T+ +LW+C   + H  E +EL  +N  LE  A+  +E +L+L+++I  LQ ++  L  ERP  YL  K  V+
Sbjct:    1 MEEFFDDSLVP--DANGILDLQEKHWVTLDEIVWSFGQSLLVLIVSRNQLVHIPPDVANLVLLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIIDASYNEXATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAKLEEVVCDENPQLQDIPESLRDNTKLVLWICGTMKQHRAEVDELVAINTELERMARLSDEERLQLRQQIATLQREKAALEAERPHHYLFVKHHVL 246
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A2D4C0D4_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0D4_PYTIN)

HSP 1 Score: 84.3 bits (207), Expect = 8.350e-15
Identity = 138/245 (56.33%), Postives = 175/245 (71.43%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQV 735
            MEE+ +    PD++GVL+L  + WV LD V+W+  + LL LNV+ N + ++PP++G+L LLREL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +     LE + C  N DL  +P  L  +T+ +LW+C   + H  + +EL  +N  LE  A+  +E +L+L++EI  L  ++  L  ERP  YL  K+Q+
Sbjct:  684 MEELLDDSLQPDANGVLDLQDKHWVTLDEVVWSFSQSLLVLNVARNQLVHVPPDVGNLHLLRELLLSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTLCDCPQLERVSCQENPDLADIPESLRENTKLVLWICGTMKQHRAQVQELVGINAELERLARLSDEERLQLRQEIARLSREKAALEAERPHHYLFVKRQL 928
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A5D6XR01_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR01_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.140e-13
Identity = 139/242 (57.44%), Postives = 164/242 (67.77%), Query Frame = 1 
Query:   13 DELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQVI 738
            D LVP  D++GVL+L  + WV LD V+W+    LL LNVS N +  +PP++G+LLLLREL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX     X XXXXXXXXXXXXXXXXXXXXXXXXXXX            C GN+ L  VP  L  +T  +LW+C   + H    +EL  +N  LE  A+  +E +LRL+E+I  LQ  +  L  ERP  YL  KQ V+
Sbjct:    7 DSLVP--DANGVLDLQDKHWVTLDDVVWSFTHSLLVLNVSRNQLVVVPPDVGNLLLLRELLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWNEXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCEGNSGLVDVPEALRGNTRLVLWICSTVKTHRAAVDELVAINAELEHIARLGDEERLRLREDIARLQRDKAALEAERPHHYLRVKQHVL 246
[Close]
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Match: A0A7S3GQP2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQP2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.280e-13
Identity = 137/239 (57.32%), Postives = 172/239 (71.97%), Query Frame = 1 
Query:    1 MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEYLPPELGDLLLLRELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGAVITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLNDALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYL 717
            MEE DELVP+ D  G LN+++RAWV LD +IWTM  +++ L++S+N+I  +PP++G+L+++REL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               N +L+ +PA    DT+++L+ C++HR + V   E+   N  L   AQ  E+  L +KE++ +L  Q   L K  P   L
Sbjct:    1 MEEDDELVPNADDRGFLNISNRAWVNLDPIIWTMSLKIVKLDMSYNHIVEIPPQIGELVVMRELIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNLDSIPAKWRGDTDSVLFTCKVHRDYGVRMAEMMRSNVELSRHAQVTEQDNLVMKEKVSILLAQIDDLKKNMPKKML 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2592.7070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FT92_ECTSI1.420e-6182.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S2V5X2_9STRA1.160e-2256.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CI12_9STRA1.420e-2170.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SRS9_9STRA1.360e-2061.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y9Z7_AURAN6.350e-1755.95Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7R9YGJ9_9STRA4.000e-1658.46Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8K1C3I3_PYTOL6.370e-1552.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0D4_PYTIN8.350e-1556.33DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A5D6XR01_9STRA1.140e-1357.44DNA replication licensing factor MCM3 n=1 Tax=Pyth... [more]
A0A7S3GQP2_9STRA7.280e-1357.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2592contigH-paniculata_contig2592:10819..15969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue2.6e-50
Seed eggNOG ortholog2880.D7FT92
KEGG koko:K19613,ko:K22038
KEGG TC1.A.25.3
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons6
Model size765
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2592.7070.1prot_H-paniculata_contig2592.7070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2592 10819..15969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.2287002-CDS-H-paniculata_contig2592:10818..109191622929772.2287002-CDS-H-paniculata_contig2592:10818..10919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 10819..10919 +
1691481004.4354851-CDS-H-paniculata_contig2592:10818..109191691481004.4354851-CDS-H-paniculata_contig2592:10818..10919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 10819..10919 +
1622929772.252296-CDS-H-paniculata_contig2592:11425..115091622929772.252296-CDS-H-paniculata_contig2592:11425..11509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 11426..11509 +
1691481004.448379-CDS-H-paniculata_contig2592:11425..115091691481004.448379-CDS-H-paniculata_contig2592:11425..11509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 11426..11509 +
1622929772.2661824-CDS-H-paniculata_contig2592:12407..125461622929772.2661824-CDS-H-paniculata_contig2592:12407..12546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 12408..12546 +
1691481004.4581308-CDS-H-paniculata_contig2592:12407..125461691481004.4581308-CDS-H-paniculata_contig2592:12407..12546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 12408..12546 +
1622929772.3202221-CDS-H-paniculata_contig2592:13772..140071622929772.3202221-CDS-H-paniculata_contig2592:13772..14007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 13773..14007 +
1691481004.4693599-CDS-H-paniculata_contig2592:13772..140071691481004.4693599-CDS-H-paniculata_contig2592:13772..14007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 13773..14007 +
1622929772.335745-CDS-H-paniculata_contig2592:14374..144661622929772.335745-CDS-H-paniculata_contig2592:14374..14466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 14375..14466 +
1691481004.4854562-CDS-H-paniculata_contig2592:14374..144661691481004.4854562-CDS-H-paniculata_contig2592:14374..14466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 14375..14466 +
1622929772.3518007-CDS-H-paniculata_contig2592:15855..159691622929772.3518007-CDS-H-paniculata_contig2592:15855..15969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 15856..15969 +
1691481004.4960632-CDS-H-paniculata_contig2592:15855..159691691481004.4960632-CDS-H-paniculata_contig2592:15855..15969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2592 15856..15969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2592.7070.1

>prot_H-paniculata_contig2592.7070.1 ID=prot_H-paniculata_contig2592.7070.1|Name=mRNA_H-paniculata_contig2592.7070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MEEIDELVPHPDSDGVLNLTHRAWVLLDSVIWTMKRELLCLNVSFNNIEY
LPPELGDLLLLRELDVSCNKLEALPPEIGKCGRLRKLRANGNYMESIPAE
VGHCALLEELILSENKLGEIPSSLSDLKALRILRLQNNKLKTLPHEIGAV
ITLEEIDCAGNADLNVVPAMLHSDTETILWVCRLHRGHAVESEELKNLND
ALETKAQKIEETKLRLKEEIQLLQEQRRVLLKERPGAYLAAKQQVILRDH
VDIY*
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mRNA from alignment at H-paniculata_contig2592:10819..15969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2592.7070.1 ID=mRNA_H-paniculata_contig2592.7070.1|Name=mRNA_H-paniculata_contig2592.7070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5151bp|location=Sequence derived from alignment at H-paniculata_contig2592:10819..15969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGATCGACGAGCTCGTGCCGCATCCGGACAGCGATGGCGTGTT
AAACCTCACACATCGGGCATGGGTGCTTCTGGACAGCGTGATATGGACCA
TGTGCGTTCGCACCGTTGTCTCTCGGCAAATGTTAATGCGGTGCAGGCGT
GTTGTCATGAGATTCATTTACACAGTCTGATAAGGGGATCAGTGGATATT
TTGAAATGGCCATGTGGCCATGAACTACTGCGAAGTATTTGATGGTGGTA
CGATGAAGGTGCTTTTCAACATGGCTGACGCCGATGTGCTCCTCGCTGAT
GCAGTGTTATACACTCTCATGTAAGTCAACAAAATCGACCCAGGTCTCCA
CGGGATATTCATTGTCTTGCTTTTTCCCTACAGGCGCCCGCAGAGACATT
ATGTAGGAGAGAAAAGCACCCCCGTCTGTGTATGATGTATACAGTACAGT
AGTATGGTATAGTTCTAACGGTACTATTGAATTAATTCCTCTATGGCTGG
TAGTGCAGTTCATGTCAGTAGTTCGCCTACATGTGCAAAGAAAAACCACA
ATATAGTCACATGCCTTCTTTTGGATCCCTTGGGCCCTTCGCTGTCGTAT
CTGACAGGAAGCGGGAACTCCTCTGCCTGAATGTGTCGTTCAACAACATT
GAGTACTTGCCCCCAGAGCTCGGCGATCTCCTCCTTCTTAGGTGATGTTC
ATGGCGAAAACTGTGGCGTATAGTTTAGTCTGCAGATGGCGATGGTCTGT
CTTGTTGTTCGAGAATCTACAGCGCTCGTTCAGCAGGGAGGGGAACCAAA
AATGGCACATTGATGTGCACACCTTCCAGCAGTAGTCGTCGAAGAAATGC
GAAATCTATCATCGTATCGTTCGTGTTGGTAGACAGCCGGCGCACCGCGT
TTCTTTCATGGTCTATTTAATCGTAAATACTATTACAACAGTGAAAGCAG
AATACTGTGCAAGCTTAAAATCGACACTGGACTTTGGTTCGTCTCGAGAA
GAATCACGGTGCGAAGCGTTTCAACTCAAAGGGGGGGCAACACGACGACA
AGTTCTATTTCGGGCTAGACGCATAAGTAGTTTGAATACTGACCTCATCT
TTGGCACCGGCATTGAATAATGCCCAAGGCTTGTGAACAAGATGTGGAAT
TGAACCCGCTATGCTCTAAAGCAACGACCAAAAAACGGTTGTCTCGAAAT
GATTCTATATTGATCAAGTCAAAGTGTCATCGAAAACGGGTATTCGCGCT
CCCCTTCAGTTGAAACGGCTCGCTGTACTCTGTAGTAAGTTGGCTCTATT
CTGGTGTATCCAGTTGTTCCACTCTGCCTCAAGTCGATTCGGCCCGGCCG
GGTGATGTCCATGGATCCACTCACCAAGTTGTTTTCGGGACGAGACCGCA
ACATATTTTCCCAAGTGTCACCGAAATCCATAATGGTGAGCACTGGGGTA
TGAAGAGTCTGTCAATAAAGTGACACATTGTACAGAAACAAAAAGCATTG
TCAGTGACTCACTGGTATTTGACACATTAAAAGACGACTGAGTCCCACTG
CTGCATTCTTTTGCTACCAAAAACAATATATTGTACAAGGGAGTTGGACG
TGTCTTGCAACAAACTGGAGGCTCTGCCACCAGAGATAGGTAAATGCGGT
CGATTGCGAAAATTACGGGCAAACGGAAACTACATGGAGTCTATCCCAGC
GGAAGTTGGTCATTGTGCCTTGCTCGAGGTATGAGTGGTCATATTAAAGC
TTTGTGATGAAAATGATTTGGGCTCTTATGGCATTTTTCGTGAGGCGGGA
TATTGACGTTTCTCTGACTCTGTGGCGCGGCTCCTTCCTCAGACGTGACA
GTCTTTAGCGTGTCCTGGGCAGCAGTTTTACTCAAGAAGTTTCTATACAG
TTTCCTTCCTTCCTTATTATCCTTCCTCCCACAAACGTAGACCCGATTGC
AACTGGTTTCCAATACAGCACCGGTGGTCCTATCGCGGTCAATCCGACAG
AAGTCCTACGCACACGGGACTCAACTGTGCAGACCCCTAGACTCACTTCT
TAGGCTGGGAACTCAGGCTTATCGGCGTCCTTGGGTGAGAGAAAACAGAA
GTGAGCGGCATTGGGTGCTGCTGCTGGTGTACACTCCCTGTTCTCGTTAC
AGTATCATCTTATTTCCCTATGTCCCGCGTAACGTTCCGCAGCAACCCGG
TCACTAAAATCCACTTCTCGAACTAACGTTTACCCCCCGATAAGTCATGT
ATCATTCCCAGATCCTTCTCTGTTATCAATTTATTTTACCAATATCCCGG
CTGCTTCTCAGTCAACAAAAATATGATCAGAATATTATTTCAGCCTGAAT
CACAAGTAGTGGACATCTGCGATGCTGTCTACGACGTTGTTATCATCAAG
TCCATTACTGTTTTCTCATGATTACACTATTCGGTAGAGTACCTTATCTC
AACACAGGATGGGATAAAGTCCTTGCAGAGGAGACAGTCGCCATCCTAAT
GACCTCGCAACAAGGTGATACTAGGAATTGTAGTGGTGGAGTCCTCAATC
GACAGGGGGCTACCACAAAAGTGTCAATGTTCCAAATATGTTTTTTTTTG
CCGAGAAGCTGCGGAATGAAAACGTCTCTCCAGACCATCTTCCAAAATGA
ATGGGTTCATGTGCGCAGATTTGGGAAATAATCCCAATATTAGGCGAGGA
ACCATGACGCGTCTGTATTCACTATACGGCGATGACTGACTAGCATTGGA
CGGTGCAGAGATCCGTTAGGAAGAGATACTCGGTGACAAAATTTGGGGCA
CTCTGAGGTATACATTCGCACAACAGCTCCAGATGCAAGCTGTTGTCAGC
CATGATTTTCGGTGTCGCAGTAGTTTCAACTGAGTACGCAACCCATCAAA
GTCCAATCGCACCCGAAGCATTCGGTCACTTGCTATCTCTCATCACTCCG
ACAGGAGTTAATACTGTCGGAGAACAAACTGGGGGAGATACCCAGTTCTT
TGTCCGATCTCAAAGCTTTGAGGATTTTGCGACTTCAGAACAACAAGCTC
AAGACCCTACCACACGAAATCGGGGCCGTGATTACCCTAGAGGAGATCGA
TTGTGCAGGAAACGCCGACTTAAACGTGGTCCCTGCGATGTTGCATAGTG
ACACAGAAACGATCTTATGGGTGTGCCGATTACATAGAGGTGAGCCTGCT
TAAGGAAGAACCCAGTCTTTGTTGACACCCGGACGGGGTGATGAGGTCGC
GAGGTCACCTGGGTCTGTTTTGCTAGTACCGTAGGTGGCTCACGTTTCAT
TACAAGTACTTCTTTGGTCAATATACGGGTTTCTACTCCAGTTCTTCAGG
TTTGTCGGAGCACAAAGAATTGTTAGCGACGACCGTAAATCAAGTTCCAA
GGAATGAAAGTTACCATGTAATCCTAAGGTTTGTCGCCGTCTTCTTCTGT
ACCCTCGAAGCTTCTATGTCCCTCCATCTCTGTTTATTTTGGAATTCTTC
CTTTGCTTGTCGCGGTGTCGATATGGGACTGAAAACACGAATAATCCGAG
TTTCAGGTCACGCGGTGGAGTCGGAAGAGTTGAAAAATTTAAACGACGCC
CTCGAAACCAAGGCGCAGAAGATAGAGGAAACCAAGCTCCGATTAAAGGT
GGGCATAAATATTGTGCTAGTAGGGCGTGTGTGTCTCCTTAGCGGTAGGT
CCGGGGAAGATATTTCGCAGCTTTGTATTCTGCTGTGTCTTGATGATACT
TGAAGTATGTGGACTTATGATGAAGATAAGTATTGAGTGGGAGAACGGTC
TTTGCCAATGGGATATATGTGGGAAACTTGATGGAATGTTTCTCCTCCCA
GTATACGCGTGGCCAGAGGATACCTTGTGAATATCTTGTTGCGGATATTA
CAACGACCCCACGTAGTGGTGAGGTTGATAGGGTGCATATAACGTGTTAG
GACGTTGTATGTACATTGTCAACCTCATCACAGCGTCCTAATACGTTGTG
TAAACACTGCCAACCTCATCACAGCGTAGATGTTACAATATCCGCAACAA
GGTACCCCTCTGGCCATGTGTGCAAGAAATGTCACACTTTCTCTTATTCC
TCTCACATGGCAACAAATACCATGGCGTTTGACCGTAAACCACGTCGCTT
GATTAGATACGTGATCAAAGGGCGAAGTTCGCGCTTGTAGATGTATTTGT
AGACAATTACATTTGATGCATGTAGCGCGCACTACACGTACAGTGGTGTA
CATCTCGCGGGTCGGTGTATCGAGAATGCCTCCGCAGGTTTGGCTGCCCC
GACTCGTGATTGCACCTTGAGTAGGTACTTGGAGCGGATACTACATGAGC
GATGTATGGGAACATACTATGTGCTGCCCCCAAACAAAGTAAACGGGCCC
AAAAGATTCTTGATATCAATCTTGATAGAACAGAAGAGTTAAGATGACCC
AAAAGTCGTCCGGTCCGAGTATCATTGGGTCGATATGCATTTACCCTGGT
CCTCATGGACCAATAGTGGAGAAATAGGCCATATAAATACAGCAGCTCCA
AGGGGGGACAGGGGGAGATGGTAGACGAACAGCTATGGCCGAACATTCGA
CTTCGCGGCGTCTGCATCGTATTGTCCATGCGCCCATGTGACGATTGGTC
AACTGATCTTCTAGCGATTCCACTCGACGAATCCCAAAGATTTCAGCATG
CTCATTGGTCGAGTGCTCAAAGGCAAGCCGAAAATTAAAACGTTTCCGGT
AAAGAAATGTATTCCCTCAGCCCCCCGAGGTTTGAATGAGACTAACGACA
GAAAACATGTACCCGAGAATTGCTAGAAATCGCCTTTTGTGTCCAGCTGA
TGTTGGAAATTGCGTAAATCAAAACCACCGGCACCTCTAATAGCGTAAGG
CCGTGGATCTATGCAATCTATGTTCTTTCGATACATCAACACCTACGTAC
GAGGCCAGATTACTTCGCCTCCGTGAACTGATAAAAAGCACAAGCTTGTG
CGGCTGCTCTTGTCCCAAACACTATGTACTCTGCTAGGAGGAAATTCAAC
TGTTGCAAGAGCAACGACGAGTTTTGCTGAAAGAGCGGCCAGGAGCATAT
CTTGCCGCGAAGCAACAGGTGATACTTCGTGATCACGTCGATATTTACTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig2592:10819..15969+

>mRNA_H-paniculata_contig2592.7070.1 ID=mRNA_H-paniculata_contig2592.7070.1|Name=mRNA_H-paniculata_contig2592.7070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig2592:10819..15969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGATCGACGAGCTCGTGCCGCATCCGGACAGCGATGGCGTGTT
AAACCTCACACATCGGGCATGGGTGCTTCTGGACAGCGTGATATGGACCA
TATGGAAGAGATCGACGAGCTCGTGCCGCATCCGGACAGCGATGGCGTGT
TAAACCTCACACATCGGGCATGGGTGCTTCTGGACAGCGTGATATGGACC
ATGAAGCGGGAACTCCTCTGCCTGAATGTGTCGTTCAACAACATTGAGTA
CTTGCCCCCAGAGCTCGGCGATCTCCTCCTTCTTAGGAAGCGGGAACTCC
TCTGCCTGAATGTGTCGTTCAACAACATTGAGTACTTGCCCCCAGAGCTC
GGCGATCTCCTCCTTCTTAGGGAGTTGGACGTGTCTTGCAACAAACTGGA
GGCTCTGCCACCAGAGATAGGTAAATGCGGTCGATTGCGAAAATTACGGG
CAAACGGAAACTACATGGAGTCTATCCCAGCGGAAGTTGGTCATTGTGCC
TTGCTCGAGGGAGTTGGACGTGTCTTGCAACAAACTGGAGGCTCTGCCAC
CAGAGATAGGTAAATGCGGTCGATTGCGAAAATTACGGGCAAACGGAAAC
TACATGGAGTCTATCCCAGCGGAAGTTGGTCATTGTGCCTTGCTCGAGGA
GTTAATACTGTCGGAGAACAAACTGGGGGAGATACCCAGTTCTTTGTCCG
ATCTCAAAGCTTTGAGGATTTTGCGACTTCAGAACAACAAGCTCAAGACC
CTACCACACGAAATCGGGGCCGTGATTACCCTAGAGGAGATCGATTGTGC
AGGAAACGCCGACTTAAACGTGGTCCCTGCGATGTTGCATAGTGACACAG
AAACGATCTTATGGGTGTGCCGATTACATAGAGGAGTTAATACTGTCGGA
GAACAAACTGGGGGAGATACCCAGTTCTTTGTCCGATCTCAAAGCTTTGA
GGATTTTGCGACTTCAGAACAACAAGCTCAAGACCCTACCACACGAAATC
GGGGCCGTGATTACCCTAGAGGAGATCGATTGTGCAGGAAACGCCGACTT
AAACGTGGTCCCTGCGATGTTGCATAGTGACACAGAAACGATCTTATGGG
TGTGCCGATTACATAGAGGTCACGCGGTGGAGTCGGAAGAGTTGAAAAAT
TTAAACGACGCCCTCGAAACCAAGGCGCAGAAGATAGAGGAAACCAAGCT
CCGATTAAAGGTCACGCGGTGGAGTCGGAAGAGTTGAAAAATTTAAACGA
CGCCCTCGAAACCAAGGCGCAGAAGATAGAGGAAACCAAGCTCCGATTAA
AGGAGGAAATTCAACTGTTGCAAGAGCAACGACGAGTTTTGCTGAAAGAG
CGGCCAGGAGCATATCTTGCCGCGAAGCAACAGGTGATACTTCGTGATCA
CGTCGATATTTACTAAGAGGAAATTCAACTGTTGCAAGAGCAACGACGAG
TTTTGCTGAAAGAGCGGCCAGGAGCATATCTTGCCGCGAAGCAACAGGTG
ATACTTCGTGATCACGTCGATATTTACTAA
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