mRNA_H-paniculata_contig25868.7049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE) HSP 1 Score: 191 bits (485), Expect = 3.580e-54 Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 336
VMGMRE EG GCILADDMGLGKTLQSIAVLWTLLKQGK +GQPAV+RA+VVCPTSLVKNWEAEIDKWLK GDCRVIALSETTR+QVVQSINLFLASM+Y+VL+VSYE R
Sbjct: 156 VMGMREFEGSGCILADDMGLGKTLQSIAVLWTLLKQGKAKGQPAVRRAVVVCPTSLVKNWEAEIDKWLK---GDCRVIALSETTREQVVQSINLFLASMVYRVLIVSYETFR 264
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA) HSP 1 Score: 156 bits (394), Expect = 7.080e-43 Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 1
Query: 4 MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAV-KRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 336
MG+R G GCILADDMGLGKTLQSIAV+WTLLKQG RG P V KR +VVCPTSLV NWEAE+DKWLK G C+ +ALSET+RDQV+ INL+L+S IYKVL+VSYE R
Sbjct: 1 MGLRNFPGSGCILADDMGLGKTLQSIAVMWTLLKQGTARGGPPVAKRCVVVCPTSLVSNWEAELDKWLK---GACKCVALSETSRDQVISGINLYLSSPIYKVLIVSYETFR 109
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A5B8N0Q2_9CHLO (SNF2-like helicase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0Q2_9CHLO) HSP 1 Score: 131 bits (330), Expect = 2.740e-33 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMI-YKVLVVSYEVRR 336
V G+++ +G+GCILADDMGLGKTLQ + +LWTLLKQG E G+P VKRA++VCPTSLV NW++E DKWLK G RV+AL+E+ RD VV I+ FL+ Y VL+VSYE R
Sbjct: 430 VCGLKDFDGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLK---GKVRVLALAESKRDDVVMGIDQFLSPRRPYDVLIVSYETFR 541
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S2JIU9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIU9_9DINO) HSP 1 Score: 122 bits (305), Expect = 8.200e-33 Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 336
+MG+RE EG GCILADDMGLGKTLQS+AV+WTLL QG G+ A ++A+++CP SLVKNW AE DKWLK G C+ +A++ + V ++ F S +K+L+ SYE R
Sbjct: 58 LMGLREYEGFGCILADDMGLGKTLQSVAVIWTLLTQGGAGGKAACRKAVIICPASLVKNWAAEFDKWLK---GRCKYVAIAVSGTAAVRGTLMTFRGSYEHKILIASYETFR 166
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S3FLG9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLG9_9CHLO) HSP 1 Score: 129 bits (323), Expect = 2.310e-32 Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMI-YKVLVVSYEVRR 336
V G+++ EG+GCILADDMGLGKTLQ + +LWTLLKQG E G+P VKRA++VCPTSLV NW++E DKWLK G RV AL+E+ D V+ I+ FL+ Y VL+VSYE R
Sbjct: 187 VCGLKDFEGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLK---GKVRVCALAESKADDVIMQIDQFLSPRRPYDVLIVSYETFR 298
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7J7QLK4_9CHLO (DNA repair and recombination protein RAD54-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QLK4_9CHLO) HSP 1 Score: 126 bits (317), Expect = 1.550e-31 Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLAS-MIYKVLVVSYEVRR 336
V G+R EG GCILADDMGLGKTLQ I+++WTLL+QG GQP KRAI+VCPTSLV NW++E KWLK G CR +AL E++RD V+ +I F+A Y L++SYE R
Sbjct: 183 VTGLRLAEGRGCILADDMGLGKTLQGISLMWTLLQQGSPALGGQPIAKRAIIVCPTSLVSNWDSECTKWLK---GRCRTLALCESSRDDVIDAITRFIAPHSSYHCLIISYETFR 294
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A090MF34_OSTTA (SNF2-related n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MF34_OSTTA) HSP 1 Score: 125 bits (315), Expect = 2.880e-31 Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASM-IYKVLVVSYEVRR 336
VMG+R+ +G GCILADDMGLGKTLQ I +LWTLLKQG + G PAVKRA++VCPTSLV NW+ E +KWLK G + + + ++TR +VV SI +FLA + +V++VSYE R
Sbjct: 179 VMGLRDFDGTGCILADDMGLGKTLQGITLLWTLLKQGFD-GAPAVKRALIVCPTSLVSNWDDECNKWLK---GRVKTLPICDSTRAEVVSSIKMFLAPRHVAQVMIVSYETFR 287
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A383VN37_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN37_TETOB) HSP 1 Score: 125 bits (315), Expect = 2.910e-31 Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKER--GQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLAS-MIYKVLVVSYEVRR 336
V G+R EG GCILADDMGLGKTLQ IA++WTLL+QG G+P KRAI+VCPTSLV NW++E KWLK G CR +AL E++RD V+ +I F+A Y L++SYE R
Sbjct: 183 VAGLRLAEGRGCILADDMGLGKTLQGIALMWTLLQQGSPALGGKPIAKRAIIVCPTSLVSNWDSECTKWLK---GRCRTLALCESSRDDVIDAITRFVAPHSSYHCLIISYETFR 294
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A516AGA3_LINPO (DNA repair and recombination protein RAD54-like n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AGA3_LINPO) HSP 1 Score: 124 bits (310), Expect = 1.350e-30 Identity = 62/112 (55.36%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 336
+MG++ +G GCILADDMGLGKTLQS+AV+WTLL QG RG+PA ++A+VVCP SLVKNW AE+DKWLK G C+ +A++ + QV + F S ++VL+ SYE R
Sbjct: 173 LMGLKPFDGSGCILADDMGLGKTLQSVAVIWTLLTQGGPRGKPACRKALVVCPASLVKNWGAELDKWLK---GKCKYVAVAVVGQAQVSGTFASFKYSHEHRVLIASYETFR 281
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Match: A0A7S4V9I8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V9I8_9DINO) HSP 1 Score: 123 bits (309), Expect = 1.790e-30 Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 VMGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVCPTSLVKNWEAEIDKWLKVSQGDCRVIALSETTRDQVVQSINLFLASMIYKVLVVSYEVRR 336
+MG++ G GCILADDMGLGKTLQS+AV+WTLL QG +RG+PA ++A+VVCP SLVKNW AE DKWLK G C+ IA++ QV + F S +KVL+ SYE R
Sbjct: 131 LMGLKGFNGCGCILADDMGLGKTLQSVAVVWTLLTQGGQRGKPACRKALVVCPASLVKNWGAEFDKWLK---GRCKYIAVAVAGAAQVAGTFASFKHSREHKVLIASYETFR 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25868.7049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25868.7049.1 >prot_H-paniculata_contig25868.7049.1 ID=prot_H-paniculata_contig25868.7049.1|Name=mRNA_H-paniculata_contig25868.7049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MGMRETEGHGCILADDMGLGKTLQSIAVLWTLLKQGKERGQPAVKRAIVVback to top mRNA from alignment at H-paniculata_contig25868:410..1142+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25868.7049.1 ID=mRNA_H-paniculata_contig25868.7049.1|Name=mRNA_H-paniculata_contig25868.7049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig25868:410..1142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25868:410..1142+ >mRNA_H-paniculata_contig25868.7049.1 ID=mRNA_H-paniculata_contig25868.7049.1|Name=mRNA_H-paniculata_contig25868.7049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig25868:410..1142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |