mRNA_H-paniculata_contig2580.7033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2580.7033.1
Unique NamemRNA_H-paniculata_contig2580.7033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2580.7033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2580contigH-paniculata_contig2580:4012..8975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1236
Cds size1236
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2580.7033.1prot_H-paniculata_contig2580.7033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2580 4012..8975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.9115396-CDS-H-paniculata_contig2580:4011..48041622929766.9115396-CDS-H-paniculata_contig2580:4011..4804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 4012..4804 +
1691481002.0346851-CDS-H-paniculata_contig2580:4011..48041691481002.0346851-CDS-H-paniculata_contig2580:4011..4804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 4012..4804 +
1622929766.9301863-CDS-H-paniculata_contig2580:5344..54951622929766.9301863-CDS-H-paniculata_contig2580:5344..5495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 5345..5495 +
1691481002.042473-CDS-H-paniculata_contig2580:5344..54951691481002.042473-CDS-H-paniculata_contig2580:5344..5495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 5345..5495 +
1622929766.950028-CDS-H-paniculata_contig2580:8683..89751622929766.950028-CDS-H-paniculata_contig2580:8683..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 8684..8975 +
1691481002.0500536-CDS-H-paniculata_contig2580:8683..89751691481002.0500536-CDS-H-paniculata_contig2580:8683..8975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2580 8684..8975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2580.7033.1

>prot_H-paniculata_contig2580.7033.1 ID=prot_H-paniculata_contig2580.7033.1|Name=mRNA_H-paniculata_contig2580.7033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
ARTGAGAACGTGSISSDVSRSTNRGYERDSEAEGDGHDDEEEKGAYAGDV
ERRQRHIQRGVLSPSDLRRRFRDDGGGGGGGLTGDMNSHDWQGAQEVLEG
EDNPNAGPGAGAGVNGGFEGGEDRKDNQRTRSMSAAAATVAVVSPAAAQR
LRHIRARLMSGGGSSGPPRTRSRSRSRSRSRSGSRSRSWSTSRQHVDQNA
SVREDGSRHGGTAAGGAKELSMGARLWSTMGHDARVLGVDASVDGQVVVT
VDYQEAVAAPGKRKYLPSYFGGVRKDWLTTGGRTVTTLRTDWTMTMSQYI
YGAETQQLRHTMEPRLPTASHNFMPPSARGGGGRGVARGEEGRHGQNPRT
SPDRQWHVANGARQQGGERPGVPPGAGPSAAGARAGGGAGDLHHGGMFPF
GGLGLGGLAAAA
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mRNA from alignment at H-paniculata_contig2580:4012..8975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2580.7033.1 ID=mRNA_H-paniculata_contig2580.7033.1|Name=mRNA_H-paniculata_contig2580.7033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4964bp|location=Sequence derived from alignment at H-paniculata_contig2580:4012..8975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGGACTGGGGCCGGGGCTGCGTGCGGGACAGGTTCGATTTCGAGTGA
CGTCAGTCGGTCCACCAACCGCGGTTACGAGAGGGACAGCGAGGCGGAGG
GCGACGGACACGATGACGAGGAAGAAAAGGGCGCCTACGCTGGGGACGTG
GAGCGACGCCAGCGACATATACAGCGGGGGGTGCTTTCTCCTTCGGATCT
TCGCCGCCGGTTCCGAGATGATGGAGGTGGCGGTGGTGGTGGGTTGACCG
GCGACATGAACAGCCACGATTGGCAAGGGGCGCAAGAGGTCCTGGAGGGA
GAAGACAACCCTAATGCTGGTCCTGGTGCTGGTGCTGGTGTTAATGGTGG
CTTTGAAGGAGGCGAGGACAGAAAAGACAACCAACGCACTCGGTCAATGT
CGGCGGCAGCGGCCACTGTCGCTGTGGTGTCTCCCGCCGCTGCGCAGCGC
CTGCGGCACATTCGAGCACGGCTCATGTCCGGCGGAGGCAGCAGCGGTCC
CCCACGGACGAGGTCGCGGTCGAGATCGAGGTCTAGGTCGAGGTCTGGTT
CAAGGTCTAGGTCGTGGTCTACAAGCAGACAGCATGTTGATCAGAATGCG
TCGGTGAGGGAGGACGGTAGTCGCCACGGCGGGACGGCGGCTGGAGGTGC
GAAAGAGCTGTCAATGGGAGCCCGGCTGTGGTCGACCATGGGGCATGATG
CTAGGGTGCTGGGTGTTGATGCTTCCGTGGACGGGCAGGTTGTTGTAACC
GTCGACTACCAGGAGGCGGTGGCGGCGCCTGGCAAGAGAAAATGTGAGAC
TAGAGTTTTTCCACTTTGCATCAGTTGGTCGTGATTCAAGCGGTCTAGAC
AGTGCGCGTGTGGATGGCGGCCAGGAGTGTTTTTGGGCCGAGTCCGGCTC
TCTTGTATTGCTCCTCTAAGAGACGACCCAGGAACCCAGAGCGTCTTCTA
AAGACTGTTGAGATATCCTTCTCGGCAATCTGTAGATATGAAACAAAAAA
ACAAACTCCAAGCTAAGTCTGGCGTTAAGAGCATTTCGATCAACAATCCC
CGTGTGTGTAAAGTAGCTGGCTTATATGAGACGGAAGGGGGGAAATGCGG
GGTCGAAGCCGTAGACGCTACTGGCTTCCCCACAGATGGTGGGGGAGGGT
GTGTGTGAGGCGCTGGCCTGTACAGGGATTTCCTGTACAATCAAGCTTTG
GTAGCCTATAATCACCTGAAACAACTTTTTTTTTTCTGCTGAAAGGTCGC
AAAATGTTTTGGGCTCGATAAACCCAATGCGTCCACTACTTACGTATGTC
CTTTGGTTCCCTCGCCCCTGCCCCTCTCCTCAGATTTACCCTCCTATTTT
GGCGGTGTACGCAAGGACTGGCTTACGACGGGCGGCAGAACGGTTACTAC
GCTACGCACAGACTGGACGATGACTATGTCGCAGTATATATATGGTGCCG
AAACTCAGCAGCTTCGGCACACGATGGAGCCGCGGTAAGAAGTAGGCCTA
TCTACCTAATTATTGACTATTACGGAGACACAGTCCTCGTTGGACCAAAG
TGGTACTCCTTTACCCAGTGTGCTTCCTTCATTTAACGCGGTGTATCTCC
ACAATCATGGGGTTGAATTCGAAAGCCGAAACGTGGGTGCGCACACATGG
CGTGATTGAGAACAGTTACGCGTGTTAGTTAGTTTCGGTGCAATGAGTTT
AGACTTTTCGTTTTTCCCGCTAAAGCAACACTTTGGTCTTACTAATAATA
GGTATTCCATAATATACCACTTTGTTGTCGGAAGTAATGGTTGATGATGA
TGGCACTCTTTTCTTTTCGCTGATTGGCTGATCATGGCTCTTTACTATCT
ATTGATTGGTTGACAATGGCTCTTTACTTTTTATTGGTTGATGGACGCTA
TGTTGTTCTCCGACGGGACACCAGAGTCAACAACACTAGCTCATTTTCTA
GTGCTAACCCCAGTACAACCCGAGCTCTATTCTCCCAATCGTCCAATAAT
TTGGTACGGTTGGCAGAGCTGGAATCGGCGGCGTTGGCGCCGATATTTTA
GCAAAGAAATGCGTGCTGAGTATACTACAGGATGATTGGATCAATGGCGG
TGACTTCATGTTTGACCTCTTCCATGAGTTAATACCGTAAAATCCTGAGG
TATCGATATCATCACCAGGGCGCGAATGCCCTTTGAAACATTATGATTGA
TCGTCTTGAGAACTACGGCGTTATTTATCCGACAACGAAGAGTGTGCCGT
GATAATGATCTTGCTAAGGAAACGTGTCTGTCGATTGACGGCTTATTGAT
TGTCTCTACCGTGTAGTGTTGTCTCCGTTCTCGAGATCGTTGACTGCGTT
CGAAGAAGCGTTCGCACCCCGGTGGTTGGATTGATTCCTATCTTCGGATT
ATACATCCCGTGTGCCGAGTTTTTATGGTGAAGCGTGGAGTTCGAGACGT
TTGTTCAACTCTACCAGCGGTTAAAGGGCACGAGAGAAAAAAAGAGGAAA
ACGTTGCGCGCGCGAGAGAGAAACAAAAAACGCACCGTGGAAGAACGGAC
AGATGGGGAACGTGCGCATGCAGTCATGCGCGCGGACGATTTCTCTTTTT
GATGTATGAGAAAGAAAAGGATAGCGACGGGGATTCTCGTCCTTCCATAC
GAGTACGGGGTAGGTAGTCACCCTCCCTTTTGCGCGCGCGCGGGGGGGGG
GTGGGGAGTTTTAACCCCCGGAAGGCTGAGGTAAAAACCTTGTCCGCTGC
TTCCATATCCAGGCTTTCACCCGGCTATGTCAACACTTCCTTTAACAGAA
CAGAGTTTCCTCTGCGGGATAGGCGCCACCCCGGCTCGGCTAAGAGCCAG
GTAGGCAGTGTGGGATTTTCACCCACTAAAAACCTCTGACTAGACTGCGG
GGGGGGGGGTTACCCTGCTTTTGCTCTATATACCATCTACCCACCTTGTC
TTTGAGGTTGAAAGCGATTGATTTCGTGAAAACACGATGGCGGGTTCGGC
TCCATGTGAAACCCGGGAACTAGACGTCGAGTAAGACATGAGAACAGGAT
TACTGCAGGTATTAACGCGATACAGGGGCGGTATTTTTGGGATCTTATAT
GTTTGCTTTGTTTCGTGTCATCAACGATTATTTTGTTGTAACCCTCCGCC
TCCTTTGTGACGATCACTTGCACGAGCTACGTCGTATGTACGTATGAATC
ATGACCAAGTATGTAGTTCACGCCCCGGACAAACACGGGAATACATGAGA
CAAATAAATACGAGAAATCTGGAGCAAACGCTGTATCTGTTCGAGCTGGG
GCAGACATGTGATGACGCGAATAATATGCATTGTACTCGATATACCATGG
AGCAACGAAAGGCTCGGGTAGATGGAGTATTCAATCTGTACAGTACCATC
CGGAAAACAAACAAGACTTGTATGTGTGACTATTCACCCGGTATACAGAT
AGCGACACCACTTAAGAAATTATTATTTGGGATGAGCCTCGTGGCTTTTG
TTCTCCCGGAGTCGAGCACAATAGCTTCTGAGCCAAGTTCTTTATGTGCG
AAGGGATGTGCAGTCATGATGAAGACCATTTTTTTTTAGTTTGGCCTGGG
ATGGTGGCTGTGCAAGATGGTTTGACTTTTCTTGAATCATTTACCACACG
CCACAACATCTTCTATTCGTGATGATTCATATTTTTATTAAATAATACGC
GTTAGGACAGCGGGCATCGAACTACATTCGTATTACCCCTCTTGGAACGA
CTCCCCTACCGTTCGGTCTACAGTCGCACTGTGCCGCAGCCGGAACGACC
ACTCAGTCAAGCTTCAAGGTCGACATTTCGTAGCCGATTTCTAATTGTGA
TGTTCGCCTCGAAGTGAGCACAATTTCTTAGCTGTAATTGCTTGATGTAA
AAAAATACAGCTTCAACTTTGCGACTGCCAATATCTCAAGTGGTGTCGCT
GTCTGTATGACCACCTGGTGACTATCTGTAGAGTGATCGTTCATAGAATA
GTAAACGAATAAATACGTGTCAACCCAAGATGAAGGTTGATAGTTTGAGA
TAGTTGCGAATGCTCTGTTTTGTGTTTGTCCTGGGGGTGATGAAGTGAAA
AGTGAAGGCACCCCCCGCGCGCTGAAGGAGTAGAATAACGGGTCAAGTAC
TGGCAGAGATTTCCTACCAGCACCCGGTATATCGGTATATACTTGTGCCG
CGCGGCGAAGCCGCAGGCGCCCCCGGACGTTAAAACTTGCGGTGTTATCG
GTATCTTTGTAGATGTTTTTATTTTGCTTCAAGGTTTGTTTTTAGTATAT
ACGCGCTGCTAGCTCCCCAAATTTTGAAGATTCCTCAGCCAGTATCTGGA
TGATTGCCTAGTACCAGTGCTACGGCAAGATTTTCAGGAGAGTAGCTGAA
AGAGCTGTCCCCCTTCTCTTCGTCGAAGGACTCGAGACAGAGAGCGAAAG
AGAGAGGTACTATCGGTTGGTCGTCAGGGCAATGCCACACAACTCTGAAA
GCGTATATAGCATGATCTGTGTGTGTGTTCACATCGAACAAAAAGCAGAT
GAGCGTGTTCTGTTGGTGACTAATGTCTGCGTAAACCTTGGGGGGAAAAA
ATGCAAATCTATCTAACCCCTGCCCCCTCGCCCACCCTCGCCCATCCATA
CCATTCGCCAACAAAAAAACAGTTTGCCGACCGCATCACACAACTTCATG
CCTCCATCGGCACGTGGAGGCGGTGGGCGCGGGGTGGCAAGGGGGGAGGA
AGGAAGGCACGGTCAGAATCCACGGACTTCACCCGACCGACAGTGGCATG
TTGCCAACGGCGCCCGGCAACAGGGAGGGGAGAGACCCGGAGTGCCGCCA
GGAGCGGGCCCGTCGGCGGCAGGTGCGCGTGCGGGGGGTGGGGCAGGCGA
TCTTCATCATGGAGGCATGTTTCCCTTCGGCGGCTTAGGGTTGGGAGGAC
TGGCAGCAGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2580:4012..8975+

>mRNA_H-paniculata_contig2580.7033.1 ID=mRNA_H-paniculata_contig2580.7033.1|Name=mRNA_H-paniculata_contig2580.7033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig2580:4012..8975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGGACTGGGGCCGGGGCTGCGTGCGGGACAGGTTCGATTTCGAGTGA
CGTCAGTCGGTCCACCAACCGCGGTTACGAGAGGGACAGCGAGGCGGAGG
GCGACGGACACGATGACGAGGAAGAAAAGGGCGCCTACGCTGGGGACGTG
GAGCGACGCCAGCGACATATACAGCGGGGGGTGCTTTCTCCTTCGGATCT
TCGCCGCCGGTTCCGAGATGATGGAGGTGGCGGTGGTGGTGGGTTGACCG
GCGACATGAACAGCCACGATTGGCAAGGGGCGCAAGAGGTCCTGGAGGGA
GAAGACAACCCTAATGCTGGTCCTGGTGCTGGTGCTGGTGTTAATGGTGG
CTTTGAAGGAGGCGAGGACAGAAAAGACAACCAACGCACTCGGTCAATGT
CGGCGGCAGCGGCCACTGTCGCTGTGGTGTCTCCCGCCGCTGCGCAGCGC
CTGCGGCACATTCGAGCACGGCTCATGTCCGGCGGAGGCAGCAGCGGTCC
CCCACGGACGAGGTCGCGGTCGAGATCGAGGTCTAGGTCGAGGTCTGGTT
CAAGGTCTAGGTCGTGGTCTACAAGCAGACAGCATGTTGATCAGAATGCG
TCGGTGAGGGAGGACGGTAGTCGCCACGGCGGGACGGCGGCTGGAGGTGC
GAAAGAGCTGTCAATGGGAGCCCGGCTGTGGTCGACCATGGGGCATGATG
CTAGGGTGCTGGGTGTTGATGCTTCCGTGGACGGGCAGGTTGTTGTAACC
GTCGACTACCAGGAGGCGGTGGCGGCGCCTGGCAAGAGAAAATGCGAGGA
CTGGGGCCGGGGCTGCGTGCGGGACAGGTTCGATTTCGAGTGACGTCAGT
CGGTCCACCAACCGCGGTTACGAGAGGGACAGCGAGGCGGAGGGCGACGG
ACACGATGACGAGGAAGAAAAGGGCGCCTACGCTGGGGACGTGGAGCGAC
GCCAGCGACATATACAGCGGGGGGTGCTTTCTCCTTCGGATCTTCGCCGC
CGGTTCCGAGATGATGGAGGTGGCGGTGGTGGTGGGTTGACCGGCGACAT
GAACAGCCACGATTGGCAAGGGGCGCAAGAGGTCCTGGAGGGAGAAGACA
ACCCTAATGCTGGTCCTGGTGCTGGTGCTGGTGTTAATGGTGGCTTTGAA
GGAGGCGAGGACAGAAAAGACAACCAACGCACTCGGTCAATGTCGGCGGC
AGCGGCCACTGTCGCTGTGGTGTCTCCCGCCGCTGCGCAGCGCCTGCGGC
ACATTCGAGCACGGCTCATGTCCGGCGGAGGCAGCAGCGGTCCCCCACGG
ACGAGGTCGCGGTCGAGATCGAGGTCTAGGTCGAGGTCTGGTTCAAGGTC
TAGGTCGTGGTCTACAAGCAGACAGCATGTTGATCAGAATGCGTCGGTGA
GGGAGGACGGTAGTCGCCACGGCGGGACGGCGGCTGGAGGTGCGAAAGAG
CTGTCAATGGGAGCCCGGCTGTGGTCGACCATGGGGCATGATGCTAGGGT
GCTGGGTGTTGATGCTTCCGTGGACGGGCAGGTTGTTGTAACCGTCGACT
ACCAGGAGGCGGTGGCGGCGCCTGGCAAGAGAAAATATTTACCCTCCTAT
TTTGGCGGTGTACGCAAGGACTGGCTTACGACGGGCGGCAGAACGGTTAC
TACGCTACGCACAGACTGGACGATGACTATGTCGCAGTATATATATGGTG
CCGAAACTCAGCAGCTTCGGCACACGATGGAGCCGCGATTTACCCTCCTA
TTTTGGCGGTGTACGCAAGGACTGGCTTACGACGGGCGGCAGAACGGTTA
CTACGCTACGCACAGACTGGACGATGACTATGTCGCAGTATATATATGGT
GCCGAAACTCAGCAGCTTCGGCACACGATGGAGCCGCGTTTGCCGACCGC
ATCACACAACTTCATGCCTCCATCGGCACGTGGAGGCGGTGGGCGCGGGG
TGGCAAGGGGGGAGGAAGGAAGGCACGGTCAGAATCCACGGACTTCACCC
GACCGACAGTGGCATGTTGCCAACGGCGCCCGGCAACAGGGAGGGGAGAG
ACCCGGAGTGCCGCCAGGAGCGGGCCCGTCGGCGGCAGGTGCGCGTGCGG
GGGGTGGGGCAGGCGATCTTCATCATGGAGGCATGTTTCCCTTCGGCGGC
TTAGGGTTGGGAGGACTGGCAGCAGCGGCGTTTGCCGACCGCATCACACA
ACTTCATGCCTCCATCGGCACGTGGAGGCGGTGGGCGCGGGGTGGCAAGG
GGGGAGGAAGGAAGGCACGGTCAGAATCCACGGACTTCACCCGACCGACA
GTGGCATGTTGCCAACGGCGCCCGGCAACAGGGAGGGGAGAGACCCGGAG
TGCCGCCAGGAGCGGGCCCGTCGGCGGCAGGTGCGCGTGCGGGGGGTGGG
GCAGGCGATCTTCATCATGGAGGCATGTTTCCCTTCGGCGGCTTAGGGTT
GGGAGGACTGGCAGCAGCGGCG
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