mRNA_H-paniculata_contig25785.7023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25785.7023.1
Unique NamemRNA_H-paniculata_contig25785.7023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Match: D7G223_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G223_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.000e-19
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 LVDQVLVACFHPKHAFHGLAKDDVLNYEKRSPHPTINLLR 120
            LVDQVLVACFHP+HAFHGL +DDVLNYEKRSPHPTINLLR
Sbjct:  174 LVDQVLVACFHPRHAFHGLEQDDVLNYEKRSPHPTINLLR 213
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BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Match: A0A6H5KV68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV68_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.390e-18
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 LVDQVLVACFHPKHAFHGLAKDDVLNYEKRSPHPTINLLR 120
            LVDQVLVACFHP+HAFHGL +DDVLNYEKRSPHPTINLLR
Sbjct:  174 LVDQVLVACFHPRHAFHGLEQDDVLNYEKRSPHPTINLLR 213
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BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Match: A0A2V3IJ06_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ06_9FLOR)

HSP 1 Score: 59.7 bits (143), Expect = 1.180e-9
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 LVDQVLVACFHPKHAFHGLAKDDVLNYEKRSPHPTINLLR 120
            LVD VL+A FHP H + G+  D  LN+EKR+P+PTIN+LR
Sbjct:  120 LVDAVLIAAFHPMHRYEGMGADSALNFEKRAPYPTINILR 159
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BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Match: A0A8J6CIB2_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIB2_DIALT)

HSP 1 Score: 56.6 bits (135), Expect = 2.360e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    7 DQVLVACFHPKHAFHGLAKDDVLNYEKRSPHPTINLLR 120
            DQ++V CFHP+H + GLA DD +N+EKRSP   +NLLR
Sbjct:  159 DQIMVVCFHPEHQWAGLATDDPVNFEKRSPFVIVNLLR 196
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BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Match: R7Q3Y7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3Y7_CHOCR)

HSP 1 Score: 53.5 bits (127), Expect = 4.050e-7
Identity = 21/41 (51.22%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LVDQVLVACFHPKHAFHGLAKDDV-LNYEKRSPHPTINLLR 120
            +VD+V++ACFHP+H + G+  +D  LN++KR+P+P IN LR
Sbjct:  215 MVDEVMLACFHPRHEWAGVGDEDAALNFDKRAPYPVINFLR 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25785.7023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G223_ECTSI8.000e-1992.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV68_9PHAE1.390e-1892.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V3IJ06_9FLOR1.180e-960.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A8J6CIB2_DIALT2.360e-860.53Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
R7Q3Y7_CHOCR4.050e-751.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25785contigH-paniculata_contig25785:307..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7G223
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2S8QH@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.1355515-CDS-H-paniculata_contig25785:306..4291622929765.1355515-CDS-H-paniculata_contig25785:306..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25785 307..429 -
1691481001.1269886-CDS-H-paniculata_contig25785:306..4291691481001.1269886-CDS-H-paniculata_contig25785:306..429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25785 307..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25785.7023.1prot_H-paniculata_contig25785.7023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25785 307..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25785.7023.1

>prot_H-paniculata_contig25785.7023.1 ID=prot_H-paniculata_contig25785.7023.1|Name=mRNA_H-paniculata_contig25785.7023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
LVDQVLVACFHPKHAFHGLAKDDVLNYEKRSPHPTINLLR*
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mRNA from alignment at H-paniculata_contig25785:307..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25785.7023.1 ID=mRNA_H-paniculata_contig25785.7023.1|Name=mRNA_H-paniculata_contig25785.7023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig25785:307..429- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTCGACCAGGTTTTGGTAGCGTGCTTCCACCCCAAACACGCCTTCCA
TGGTCTGGCCAAGGACGATGTACTTAACTACGAGAAGCGGTCTCCGCATC
CAACGATCAATCTACTCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25785:307..429-

>mRNA_H-paniculata_contig25785.7023.1 ID=mRNA_H-paniculata_contig25785.7023.1|Name=mRNA_H-paniculata_contig25785.7023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig25785:307..429- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTCGACCAGGTTTTGGTAGCGTGCTTCCACCCCAAACACGCCTTCCA
TGGTCTGGCCAAGGACGATGTACTTAACTACGAGAAGCGGTCTCCGCATC
CAACGATCAATCTACTCAGGTGATTGGTCGACCAGGTTTTGGTAGCGTGC
TTCCACCCCAAACACGCCTTCCATGGTCTGGCCAAGGACGATGTACTTAA
CTACGAGAAGCGGTCTCCGCATCCAACGATCAATCTACTCAGGTGA
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