mRNA_H-paniculata_contig11081.701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11081.701.1
Unique NamemRNA_H-paniculata_contig11081.701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11081.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11081contigH-paniculata_contig11081:6538..7079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size542
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11081.701.1prot_H-paniculata_contig11081.701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11081 6671..7054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.0380087-UTR-H-paniculata_contig11081:6537..66701622928815.0380087-UTR-H-paniculata_contig11081:6537..6670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11081 6538..6670 +
1691480630.6924398-UTR-H-paniculata_contig11081:6537..66701691480630.6924398-UTR-H-paniculata_contig11081:6537..6670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11081 6538..6670 +
1622928815.0603163-UTR-H-paniculata_contig11081:7054..70791622928815.0603163-UTR-H-paniculata_contig11081:7054..7079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11081 7055..7079 +
1691480630.7227283-UTR-H-paniculata_contig11081:7054..70791691480630.7227283-UTR-H-paniculata_contig11081:7054..7079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11081 7055..7079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928815.0511992-CDS-H-paniculata_contig11081:6670..70541622928815.0511992-CDS-H-paniculata_contig11081:6670..7054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11081 6671..7054 +
1691480630.7102969-CDS-H-paniculata_contig11081:6670..70541691480630.7102969-CDS-H-paniculata_contig11081:6670..7054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11081 6671..7054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11081.701.1

>prot_H-paniculata_contig11081.701.1 ID=prot_H-paniculata_contig11081.701.1|Name=mRNA_H-paniculata_contig11081.701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MPHASLTLSSQVISPVAAAAGPSTPHTTPSFSASSQFRTLSCSTASPALF
FAAAVAAAIVAAVAGSSRAKGLHPSSRLCRSGDRLPMLRAMARVKFFIDC
IRCPQGAARVEDFSMFGGRGFPTDGDI*
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mRNA from alignment at H-paniculata_contig11081:6538..7079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11081.701.1 ID=mRNA_H-paniculata_contig11081.701.1|Name=mRNA_H-paniculata_contig11081.701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=542bp|location=Sequence derived from alignment at H-paniculata_contig11081:6538..7079+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGACTGTCGCGGCTGGAGCGGCATCTCTGACGGTAGGGGACAGGTCA
TCGACGCAACCGCCTGCCCCACCGCGTGAAACCCAGGCATTTCTTTCCCA
CACCGCACCGACACGCCGTTCTTCAGCGTGGCCATGCCCCACGCGTCCCT
AACGCTGTCATCGCAAGTCATATCGCCAGTAGCTGCCGCCGCTGGCCCCT
CCACGCCGCACACCACCCCTTCCTTTTCCGCCTCGTCGCAGTTTCGTACG
CTTTCTTGTTCTACTGCCAGTCCTGCGCTATTTTTTGCGGCCGCGGTCGC
TGCCGCCATCGTGGCCGCCGTTGCCGGCAGCTCTCGAGCCAAGGGTCTGC
ACCCGTCCTCGCGGTTGTGTCGGTCGGGTGACCGTCTGCCCATGCTGCGG
GCCATGGCGCGGGTAAAATTTTTCATCGACTGTATTCGCTGTCCACAGGG
CGCGGCACGGGTGGAGGACTTCAGCATGTTCGGAGGCCGTGGATTCCCAA
CGGATGGGGACATTTGATTAGGCTCGGGTTCATGCCTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11081:6538..7079+

>mRNA_H-paniculata_contig11081.701.1 ID=mRNA_H-paniculata_contig11081.701.1|Name=mRNA_H-paniculata_contig11081.701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig11081:6538..7079+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCACGCGTCCCTAACGCTGTCATCGCAAGTCATATCGCCAGTAGC
TGCCGCCGCTGGCCCCTCCACGCCGCACACCACCCCTTCCTTTTCCGCCT
CGTCGCAGTTTCGTACGCTTTCTTGTTCTACTGCCAGTCCTGCGCTATTT
TTTGCGGCCGCGGTCGCTGCCGCCATCGTGGCCGCCGTTGCCGGCAGCTC
TCGAGCCAAGGGTCTGCACCCGTCCTCGCGGTTGTGTCGGTCGGGTGACC
GTCTGCCCATGCTGCGGGCCATGGCGCGGGTAAAATTTTTCATCGACTGT
ATTCGCTGTCCACAGGGCGCGGCACGGGTGGAGGACTTCAGCATGTTCGG
AGGCCGTGGATTCCCAACGGATGGGGACATTTGAATGCCCCACGCGTCCC
TAACGCTGTCATCGCAAGTCATATCGCCAGTAGCTGCCGCCGCTGGCCCC
TCCACGCCGCACACCACCCCTTCCTTTTCCGCCTCGTCGCAGTTTCGTAC
GCTTTCTTGTTCTACTGCCAGTCCTGCGCTATTTTTTGCGGCCGCGGTCG
CTGCCGCCATCGTGGCCGCCGTTGCCGGCAGCTCTCGAGCCAAGGGTCTG
CACCCGTCCTCGCGGTTGTGTCGGTCGGGTGACCGTCTGCCCATGCTGCG
GGCCATGGCGCGGGTAAAATTTTTCATCGACTGTATTCGCTGTCCACAGG
GCGCGGCACGGGTGGAGGACTTCAGCATGTTCGGAGGCCGTGGATTCCCA
ACGGATGGGGACATTTGA
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