mRNA_H-paniculata_contig25429.6930.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25429.6930.1
Unique NamemRNA_H-paniculata_contig25429.6930.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25429.6930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25429contigH-paniculata_contig25429:67..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.770297-CDS-H-paniculata_contig25429:66..5251622929750.770297-CDS-H-paniculata_contig25429:66..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25429 67..525 +
1691480995.4384205-CDS-H-paniculata_contig25429:66..5251691480995.4384205-CDS-H-paniculata_contig25429:66..525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25429 67..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25429.6930.1prot_H-paniculata_contig25429.6930.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25429 67..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25429.6930.1

>prot_H-paniculata_contig25429.6930.1 ID=prot_H-paniculata_contig25429.6930.1|Name=mRNA_H-paniculata_contig25429.6930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
CCCGGGGGGGDGDGGRTLAGLTSAGEDVVTLEWRSGALLLVAGNATRLPL
ATGVEGECPAIVGGGEEAVDLSQGSSCRFIDVPNCSLLLLPTPLLVSLGG
WSLIPAAAAAASAAAAGNASAVALCFPSSLLLFSPGKLLAWPVLLPVAAA
PPP
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mRNA from alignment at H-paniculata_contig25429:67..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25429.6930.1 ID=mRNA_H-paniculata_contig25429.6930.1|Name=mRNA_H-paniculata_contig25429.6930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=460bp|location=Sequence derived from alignment at H-paniculata_contig25429:67..526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGCTGCGGCGGCGGCGGCGGCGGCGGGGACGGTGATGGTGGGCGTAC
TCTGGCTGGACTGACATCTGCAGGCGAAGATGTGGTGACGTTAGAATGGC
GCTCGGGAGCACTCCTACTCGTAGCAGGCAACGCGACGCGGCTGCCTCTC
GCGACTGGCGTAGAGGGCGAGTGTCCTGCGATCGTCGGTGGTGGCGAAGA
AGCAGTTGATCTGTCCCAGGGAAGTTCCTGTCGCTTTATAGATGTACCAA
ACTGCAGCTTGCTGCTGCTTCCAACGCCACTGTTGGTGAGCCTCGGAGGA
TGGTCACTAATACCTGCAGCGGCAGCGGCAGCCTCAGCAGCAGCAGCGGG
CAATGCTTCCGCCGTAGCGTTGTGTTTCCCTTCGTCGTTGCTGTTGTTTT
CTCCAGGAAAACTACTAGCATGGCCAGTATTGCTCCCTGTTGCTGCTGCT
CCTCCTCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig25429:67..526+

>mRNA_H-paniculata_contig25429.6930.1 ID=mRNA_H-paniculata_contig25429.6930.1|Name=mRNA_H-paniculata_contig25429.6930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig25429:67..526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGCTGCGGCGGCGGCGGCGGCGGCGGGGACGGTGATGGTGGGCGTAC
TCTGGCTGGACTGACATCTGCAGGCGAAGATGTGGTGACGTTAGAATGGC
GCTCGGGAGCACTCCTACTCGTAGCAGGCAACGCGACGCGGCTGCCTCTC
GCGACTGGCGTAGAGGGCGAGTGTCCTGCGATCGTCGGTGGTGGCGAAGA
AGCAGTTGATCTGTCCCAGGGAAGTTCCTGTCGCTTTATAGATGTACCAA
ACTGCAGCTTGCTGCTGCTTCCAACGCCACTGTTGGTGAGCCTCGGAGGA
TGGTCACTAATACCTGCAGCGGCAGCGGCAGCCTCAGCAGCAGCAGCGGG
CAATGCTTCCGCCGTAGCGTTGTGTTTCCCTTCGTCGTTGCTGTTGTTTT
CTCCAGGAAAACTACTAGCATGGCCAGTATTGCTCCCTGTTGCTGCTGCT
CCTCCTCCTTGCTGCTGCGGCGGCGGCGGCGGCGGCGGGGACGGTGATGG
TGGGCGTACTCTGGCTGGACTGACATCTGCAGGCGAAGATGTGGTGACGT
TAGAATGGCGCTCGGGAGCACTCCTACTCGTAGCAGGCAACGCGACGCGG
CTGCCTCTCGCGACTGGCGTAGAGGGCGAGTGTCCTGCGATCGTCGGTGG
TGGCGAAGAAGCAGTTGATCTGTCCCAGGGAAGTTCCTGTCGCTTTATAG
ATGTACCAAACTGCAGCTTGCTGCTGCTTCCAACGCCACTGTTGGTGAGC
CTCGGAGGATGGTCACTAATACCTGCAGCGGCAGCGGCAGCCTCAGCAGC
AGCAGCGGGCAATGCTTCCGCCGTAGCGTTGTGTTTCCCTTCGTCGTTGC
TGTTGTTTTCTCCAGGAAAACTACTAGCATGGCCAGTATTGCTCCCTGTT
GCTGCTGCTCCTCCTCCT
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