mRNA_H-paniculata_contig2538.6914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2538.6914.1
Unique NamemRNA_H-paniculata_contig2538.6914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI)

HSP 1 Score: 737 bits (1902), Expect = 1.100e-253
Identity = 418/715 (58.46%), Postives = 493/715 (68.95%), Query Frame = 1
Query:  304 MVGPAPPPEXXAPPVLDKDGNELSKRTKRKVALVVGYVGTDFHGWQQSTD-RGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAEDGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPDEAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTK--------RGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKP----------------------SWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVG-----------KDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVE-------QEREEVGDQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAFTRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEELQAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAGGFNPAD 2301
            M+GP  PP    P + D DGNELSK TKRKVA+VVGYVGT FHGWQQSTD + VRTVEG LETALWKAG IA+SNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLL P ETF   G+SQ+ KD LNE LP D+RCFSVSKVPKSFRGR+ECTLREY+YYLP+ LLPD+ A  KFR LL LFVGTHSFHN+ASTKGRQLKEVR+RV+ASID K    K A   +KA       +   +                      R   +KD+WRT+R+KKK+A DQ  +D+W+GK                         +  +++ S   G  SA     E    GD       G           KD    G    AE A V  +                   QE   VG + +EGPEK ++LRELRTSIYRCEALD +VS+ RPG +  DEF+RIDIRGKAFVYNQIRLMIGGAL EARG+L+ GFV AAL TPY++RVPLAPAEGLVLESQAFTRHTNALVLDPRDL S+GGT+A WG+ S  GN M+TTGRLQTLLT  QL E  RW D+HI+PAVADAW +RG A+ FL  V+KFFVGQQ  E L  AI E+++++  +E+ AEEK+NK+R  +KERGSTKYKDLLPK+IAT I+CKFRLLPGNKVSAIQRGV + M +G+LP LA+ +E+L F+EK+GVD++A+ GGF   D
Sbjct:    1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDEALGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAPGPEKAAGGAVSVSAPGSEXXXXXXXXXXXXXXXXXXXXXRRWVSKDEWRTYRYKKKSAADQKADDAWFGKXXXXXXXXXXXXXXXXXXXXXXXXXAGAEQQASGDEGPESASPRSIEGGTSGDAVGSADAGSAAAVAAAVTPKDVAGAGGXXXAEGAVVKSDGXXXXXXXXXXXXXXAPGAQEAAGVGGE-DEGPEKQILLRELRTSIYRCEALDGIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHTNALVLDPRDLGSIGGTLAVWGE-SKEGNAMKTTGRLQTLLTREQLREAARWSDKHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFLEKIGVDQVALDGGFVAPD 713          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE)

HSP 1 Score: 537 bits (1384), Expect = 2.510e-176
Identity = 337/698 (48.28%), Postives = 406/698 (58.17%), Query Frame = 1
Query:  229 LQCLPLLGIASSFSSSRTVLAA----RTPMVGPAPPPEXXAPPVLDKDGNELSKRTKRKVALVVGYVGTDFHGWQQSTD-RGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAEDGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPDEAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGR-SNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAFTRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEELQAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAGGFNPADI 2304
            L  LPL   +S      T L      R PM+GP  PP    P + D DGNELSK TKRKVA+VVGYVGT FHGWQQSTD + VRTVEG LETALWKAG IA+SNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLL P ETF   G+SQ+ KD LNE+LP D+RCFSVSKVPKSFRGR+ECTLREY+YYLP+ LLPD+ +  KFR LL LFVGTHSFHN+ASTKGRQLKEVR+RV+ASID K    K AQ+     XXXXXX               +G+K+ R  +KD+WRT+R+KKK+  DQ  +D+W+GK             +                             A GD                                   EGPE                   D V     G+      + +  +  A                          A+ ++ P          E    E Q   R             S+GGT+A WGD S  GN M+TTGRLQTLLT  QL E +RW  EHI+PAVADAW +RG A+ FL  V+KFFVGQQ  E L  AI E+++++  +E+ AEEK+NK+R  +KERGSTKYKDLLPK+IAT I+CKFRLLPGNKVSAIQRGV + M +G+LP LA+ +E+L FIEK+GVD++A+ GGF   D+
Sbjct:   51 LSILPLNRCSSGSKRGGTSLTGVRKPRAPMIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDGSLGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAQEAGGTAXXXXXXXXXXXXXXXXXXXXESGSKKRRWVSKDEWRTYRYKKKSTADQKADDAWFGKQ------------SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGD-----------------------------------EGPESA------SPRSVEGGTSGDAVGTADAGSVAAVAAV-VTPKDVASXXXXXXXXXXXXXXXXXXXXXXXXXASVVSAPGAQEAEGVGGEDEGPEKQILLRELRT---------SIGGTLAVWGD-SKEGNAMKTTGRLQTLLTREQLREAERWSYEHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDV 684          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA)

HSP 1 Score: 320 bits (821), Expect = 3.640e-94
Identity = 241/720 (33.47%), Postives = 332/720 (46.11%), Query Frame = 1
Query:  361 GNELSKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSR--------------TDKGVHASKTVAAAKLLYPPETFAEDGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPDEAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQ----ASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLM---LRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQ------IRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAFT--RHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEE-------------------LQAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGK---------------------LPALADNDEVLGFIEKMGVDELAIAGGFNPADIVTA 2313
            G E     KRKVALV+GYVGTDF G Q   + GVRTVE  +ETAL+ AG I  SNYGDL+KIGW RTSR              TDKGVHA+KTV  AKLL     F   GL+   K  +N  LP D+R FSV KVPK FRGR EC+ R+Y YYLP  LL D+ A  KF  LL LF GTHSFHNF S KGR+L++ R+ V     A+ DR+N     A   Q            +AS+   + +A                      + V Q E                              A + P+ +V E    G+   A G+G                                   G E V+M   ++E+ +SIYR E     +S         + F+R+++RG++F+YNQ      IRLM+G AL EA G +  G+VAA L TP  +  PL P +GL+L SQ FT  +  NA VL+P+ L+ VGGT+ ++      G  +   GRLQ L+    ++E + +RD  I+P +A +W+   A                 G++                   L  A++ ++   +  + A   K   YR  + ER S   K+ LPK   T ++ +F +LPGNKV A+++ +   M Q                       LP LA  D++L  +E++G++ +A  GGF P     A
Sbjct:    7 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVP-------EASVGQSDDNA----------------------DVVSQSEASDXXXXXXXXXXXXXXXX-------XXXXASNEPVEEVQEEGDEGEGAAAGGEG---------------------------------AAGGEGVVMRNIMKEMTSSIYRMELEGAPLSV----GGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQY----VGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGFQPGVAAQA 649          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: W7U6V3_9STRA (Pseudouridylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6V3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.320e-52
Identity = 222/744 (29.84%), Postives = 313/744 (42.07%), Query Frame = 1
Query:  340 PPVLDKDGNELSKRTKRKVALVVGYVGTDFHGWQQST----DRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAEDG--LSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLL-------------PDEAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGR--------------------SNKDDW-----------------------------RTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRD--RAESVPIGDVAE-LTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFP-GFVAAALNTPYRIRVPLAPAEGLVLESQAFTRHT-NALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEELQAAI-------KEHMAKVETTEKAAEEKHNKY------RRESKE-------RGSTK-----------YKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMG 2259
            P  +D     L  R KR++ALV+GYVGT + G Q+S     +  V T+E VLE AL+ AG I  SN+GDL+KIGW R SRTDKGVHA++ V +AKL    +    D    S+ A   +N  LP D+R  S +K  KSFR RD  + REY Y +P  LL               EA   +F  LL  F GTH+FHNF   K R L    RR++A        + N Q+  + G       E  AS     T   AG K G                        ++W                             +  R   +N   +++ D    K +  W    V A  G G   +D  R E V IGD A+ +TT   D   +         GV                                  L+ +RT+IYRCE     V  +        +F+ +   G +F+YNQIRL++GGA+  A G LFP   +  AL++PY I  PLAPAEGL L    F R + N +V+D  DL +     A                ++  LL+    +  D +  E I+  +  AW      E +      F +     EE++AA+       +E MAK+E   KAA E   +       +RE  E        G  K           Y+  +P+  AT ++ +FRL PG +V  + RG+A  M +G++P  A ++E+   +E  G
Sbjct:  104 PQTVDVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLI---RRLKAKAGSSRAWVHNNQRGGREGEAIAAGGE--ASTGEDGTGR-AGEKGGEYXXXXXXXXXXXXXXXXXXXXXXEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEERGW----VGA-GGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRY--------QGV----------------------------------LKMVRTNIYRCEGRALQVGGK--------DFVAVTFHGSSFLYNQIRLLVGGAIAVASG-LFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAA------------NCPQVYALLSKEAGQRADNFERERILTEITGAWTPE-LLEEWRRYARAFLID----EEVEAALSKKFRQWRESMAKLEEA-KAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEG 767          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A6A3ZI15_9STRA (PseudoU_synth_1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZI15_9STRA)

HSP 1 Score: 199 bits (506), Expect = 5.410e-51
Identity = 184/665 (27.67%), Postives = 285/665 (42.86%), Query Frame = 1
Query:  349 LDKDGNELSKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAE--DGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPD------------EAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEA--LDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAFTRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQ--DGEELQAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKD--LLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            LD      +K  KRKVA+V GY+GT +HG Q + +  V T+E  +  A++KAG +  SN+ DL KI W R+SRTDKGVHAS  V + KLL   E   +   G  +  K+ LN  LP ++R FS ++V K F  R  C LREY Y++P   L D            + A  +F   L  + G H FHNF  ++    K   +R Q  ++ +                                                       +NA                    E  A+A     + + A+          TT+          DY+E++   E+                      EEG  + L+ R  R SIY C    + D            +  +R+ I G+AF+ NQIR M+GGAL  A   +      AAL T   +RVP+APAEGLVL S +F    + + L P        T+AK               R+  LL   + EE +++R+E I   V ++W      + + + +++ +   Q  D +EL  A+ E    ++  + A + K+  Y  +++   + K +   LLPK  AT++  ++ + PG   S ++R VA+ ++ GK+P  AD DE++ +I+  G + LA  G
Sbjct:   29 LDDGAATPAKLVKRKVAIVSGYMGTGYHGLQMNDN--VETIEDEIRRAIFKAGAMRESNFEDLGKIDWARSSRTDKGVHASCIVFSGKLLIDEENKVDPASGRVKGLKEALNASLPDNIRVFSCTRVNKRFSARKNCVLREYEYFMPLSFLKDSIIGSDGADLDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKRNQWKMEHQ-------------------------------------------------------RNAA-------------------EAQATADDDVVEAEDADDGDAXXXXXPTTID---------DYSEESSQFED----------------------EEGLTRKLLTRH-RRSIYSCSGSLIPDFCG---------EPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVAFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKLHTVSLYPDSNT----TLAK--------ERKDLVHRI--LLNRHEDEEMEKFREEVIYKEVGNSWNMEEKMDRWRAYLERCYEANQLLDEDELSIALYE----LDQVKLARKNKNQSYVEQNRIELAEKGRQGALLPKQFATKLCVRYSVAPGIFTSDLRRAVARHLKSGKIPLTADEDEIMAYIDNYGPEALAHEG 558          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A3F2RKM1_9STRA (PseudoU_synth_1 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKM1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.270e-50
Identity = 191/664 (28.77%), Postives = 285/664 (42.92%), Query Frame = 1
Query:  373 SKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAED--GLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPD---------------EAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEA--LDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEELQAAIKEHMAKVETTEKAAEEKHNKYRRESK------ERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            +K  KRKVA+V GY+GT +HG Q + D  V+T+E  L TA++KAG +  SN+ DL KI W R+SRTDKGVHA   V + KLL   E   +   G  +   + LN  LP+++R FS ++V K F  R  C LREY Y+LP   L +               + A  +F   L  + G H FHNF  ++    K     VQA + +                                                W+  R    +A D D+                       G  D+D    +   D  E +T        GD D+AED       +  GD                EEG  + L+ R  R SIY C    + D    Q         F+R+ I G+AF+ NQIR MIGGAL  A   +      AAL+T   +RVP+APAEGLVL S  F    HT +L  DP        ++AK               R+  LL   + EE  ++R+E I   VA +W      + + + +++ +   +  +E + AI   + +++   +    +   Y R+++       RG      LLP+   T++  ++ + PG   S ++R VA+ +  GK+P  AD D+++ +I+  G + LA  G
Sbjct:   51 TKLVKRKVAIVGGYMGTGYHGLQLNKD--VQTIEDELRTAIFKAGAMRESNFEDLGKIDWSRSSRTDKGVHAGCIVFSGKLLIDEENQVDPTTGRVKGLTEALNASLPSNIRVFSCTRVNKRFSARKNCALREYEYFLPLSFLKECLVESGKIDADSLNMDEAIVEFGRALRRYEGVHDFHNFTRSRSYFYK-----VQAKMMQ------------------------------------------------WKAQR----DAFDTDD-----------------------GGDDQDXLSEIXXSDEEEEST--------GD-DFAEDM------SQFGD----------------EEGLTRKLLPRH-RRSIYSCTGTLISDFSGKQ---------FLRVHIVGQAFLLNQIRCMIGGALAVATKGMSRTAFDAALSTNRIVRVPIAPAEGLVLLSSTFGGKLHTVSLYEDPNT------SLAK--------ERKDLVHRI--LLDHREDEEMTKFREEVIYTEVASSWNKNEDMDRWRAYLERCYESNKHLDEDELAIL--LYELDQANERKRSRSQSYVRQNRIDLAENGRGGA----LLPRQFTTKLCIRYNVAPGIFTSDLRRAVARHLRSGKIPCDADEDQIMAYIDSYGSENLAEEG 569          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A329S330_9STRA (PseudoU_synth_1 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S330_9STRA)

HSP 1 Score: 190 bits (483), Expect = 8.050e-48
Identity = 194/662 (29.31%), Postives = 283/662 (42.75%), Query Frame = 1
Query:  373 SKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAE--DGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPD------------EAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEA--LDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFV--GQQDGEELQAAIKE-HMAKVETTEKAAEEKHNKY----RRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            +K  KRKVA+V GY+GTD HG Q + +  V+T+E  +  A+++AG +  SN+ DL KI W R+SRTDKGVHA   V + KLL   E   +   G     K+ LN  LP ++R FS ++V K F  R  C LREY Y++P   L D            + A  +F   L  + G H FHNF  ++    K   +R Q           NAQ ++ A           A + + N  AV                        D D+ED+          +EE +A       D    ES    D  ELT                                                     +L   R SIY C    + D       G E     +R+ I G+AF+ NQIR M+GGAL  A   +      AAL T   +RVP+APAEGLVL S +F    HT +L  DP  +      +AK               R+  LL  ++ EE  ++R+E I   VA +W      + + S +++ +   G+ D +EL   + E   AK+     A + K+  Y    R E  E G  +   LLPK  AT++  ++ + PG   S ++R V + ++ GK+P  AD+++++ +I+  G   LA  G
Sbjct:   49 TKLVKRKVAIVTGYMGTDHHGLQLNEN--VKTIEDDIRHAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVNGLKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLIGSDGADFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKVQAKRKQY----------NAQNRRNA-----------AEVDTVNDVAV-----------------------EDSDDEDA----------EEEPAA------VDDYSEESSQFEDEEELTRK---------------------------------------------------LLPRHRRSIYSCSGTLVPDF------GGEP---HLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPNTV------LAK--------ERKDVVHRI--LLNPSEDEEMRKFREEVIYKEVASSWDLDEKMDRWRSYLERCYESNGRLDEDELSGVLYELDQAKL-----ATKNKNQSYVEQNRFELTEYG--RQGALLPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKAGKIPLDADDEQIMAYIDSYGPGNLAKEG 565          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A067C0B2_SAPPC (PseudoU_synth_1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0B2_SAPPC)

HSP 1 Score: 186 bits (472), Expect = 8.130e-47
Identity = 196/662 (29.61%), Postives = 274/662 (41.39%), Query Frame = 1
Query:  343 PVLDKDGNELSKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAE-DGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPD--------EAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVV----DKFFVGQQDGEELQAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            P+L     E  KR K KVALV GY+GT +HG Q     GV TVE  +  AL+KAG I  SN  DL+KIGW R+SRTDKGVHAS  V +AKLL   ++  E DG  +   + +N HLP  +R F+ +KV +SFR R++CTLREY Y+LP   L          EA      + L  + G   FHNF   +G   KE  RRV   +       K+A       XXXXXX  D  S+ S N S   GT+R                                                                                                                        L+  R +IYRC           P       ++R+ + G +F+ NQIR M+G A+  A G L P    AAL T   +RVP APAEGLVL S A    R   +LV D    +++   M K+          +   R+  LLT+ + +    +    I   V  AW +  A   + S +    ++F   Q     LQAA+ + + + +T + AA  +  +  R  ++         LP+  +T +  +F L PGN V+ +   V +S+  G +P  A  D++L F+E +GVD+LA  G
Sbjct:   10 PLLRLFSTEAKKR-KVKVALVSGYLGTGYHGVQLQDTNGVPTVENEVRAALFKAGCILESNLADLSKIGWSRSSRTDKGVHASCIVFSAKLLVDSDSINETDGRLRGLPEAINAHLPPSIRMFTATKVHQSFRAREDCTLREYEYFLPLSFLAPLATNGQSVEAMADTILATLPRYEGIFDFHNFTKQRGSFYKEKDRRVAKRM------AKDAMSDXXXXXXXXXXXXD-LSVPS-NISIENGTRRS-----------------------------------------------------------------------------------------------------------------------LQRHRRTIYRCRGSLIQDFHGSP-------YLRVHLTGASFLLNQIRCMVGAAIAVATGHLSPMMFDAALETNQIVRVPTAPAEGLVLSSCALGGKRPLISLVHDHNTPSAL--EMKKF----------EAPHRI--LLTSTESDALGAFCHNVIYKEVDRAWKTSEAVAKWPSTLALFHERFLEQQAHLPVLQAAV-DALRQNDTEKLAASMRVVQQARRDEDPIRC-----LPRAFSTSLCIRFGLTPGNYVTDLLIAVKQSVLSGVVPVDATEDDLLAFVEDVGVDKLAARG 516          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: V9E711_PHYPR (tRNA pseudouridine(38-40) synthase n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E711_PHYPR)

HSP 1 Score: 186 bits (473), Expect = 1.470e-46
Identity = 181/661 (27.38%), Postives = 281/661 (42.51%), Query Frame = 1
Query:  373 SKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAE--DGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLLPD------------EAADRKFRSLLDLFVGTHSFHNFASTKGR--QLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEA--LDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQ--DGEELQAAIKE-HMAKVETTEK-AAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            +K  KRKVA+V GY+GT +HG Q + +  V+T+E  +  A++ AG +  SN+ DL KI W R+SRTDKGVHA   V + KLL   E   +   G     K+ LN  LP ++R FS ++V K F  R  C LREY Y++P   L D            + A  +F   L  + G H FHNF  ++    +++  R+  +A+  R                                                         NA + + +D                       A+    ES  +  V +              DY+E++   E++  L                       + L+LR  R SIY C    + D            +  +R+ I G+AF+ NQIR M+GGAL  A   +      AAL T   +RVP+APAEGLVL S +F    HT +L  DP         +AK               R+  LL+  + EE  ++R+E I   ++ +W      + + + +++ +   +  + +EL A + E   AK+ T  K  A  + N++  E  E G      LLPK  AT++  ++ + PG   S ++R V + ++ GK+P  AD +++LG+I+  G   LA  G
Sbjct:   49 AKLVKRKVAIVTGYMGTGYHGLQLNDN--VKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKRKHYRANYQR---------------------------------------------------------NAAEDESDDV---------------------DAEDVEDESAEVDSVVD--------------DYSEESSQFEDEEEL----------------------TRKLLLRH-RRSIYSCSGTLVPDFCG---------EPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPNT------ELAK--------ERKDVVHRV--LLSRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRF--ELTEYGRKSVGALLPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPANLAKEG 565          
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Match: A0A485KC76_9STRA (Aste57867_2617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC76_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.220e-46
Identity = 191/656 (29.12%), Postives = 271/656 (41.31%), Query Frame = 1
Query:  373 SKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGVLETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPETFAE-DGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYLPKHLL-------PDEAADRKFRSLLDLFVGTHSFHNFAST-----KGRQLKEVRRRVQASIDRKNLDIKNAQQQQKAGXXXXXXTEDQASLRSQNTSAVAGTKRGRSNKDDWRTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVPIGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVGDQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRGKAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVLESQAF--TRHTNALVLD---PRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLTTAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEEL-QAAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVCKFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIAG 2283
            +K+ K KV LV GY GT +HG Q   +  V T+E  +  AL+KAG I  SNY D++KIGW R+SRTDKGVHA+  V +AKLL   +      G      D +N HLP  VR FS +KV +SFR R+EC LREY Y+LP   L       P +AA +     L LF G H FHNF        K ++LKE RR                                             GT R                                                        V I D   ++                       D S+ D                  G  K L     R +IY C     +V      A     +IRI + G +F+ NQIR M+G  +  A G +   F+ AAL+T + +RVP APAEGLVL   +F   +H  +LV D   P++L               S N  Q   R+  LL+  +L +   +RDE I   V  +W     +E+     + F    +  E L + +I   +A V T E+   E   +  +E++E  +  +  LLP+  AT +   + L PGN V+ +  G+ K + +G++PA A  D++   I+ +G+D+LA +G
Sbjct:   20 AKKRKVKVGLVTGYTGTGYHGVQIQENGDVPTIEYDVREALFKAGCILESNYADMSKIGWSRSSRTDKGVHATAIVLSAKLLVHEDRIDPVTGRIAHLVDEVNAHLPDAVRVFSATKVHQSFRAREECILREYEYFLPVEFLDQVCTNVPVDAAVQTVLDTLPLFEGIHDFHNFTKQRRYFYKLQELKEQRR---------------------------------------------GTTRXX-----------------------------------------------XXXXXXXVLINDDEVVSR----------------------DISIAD------------------GTRKPLQRH--RRTIYSCRGT--LVPDLHGRA-----YIRIRLTGASFLLNQIRCMVGAVIGVASGAMDVDFLHAALDTNHIVRVPTAPAEGLVLSGCSFGAKQHLISLVQDYNTPKNLVV-------------SKNPNQAPHRV--LLSRDELAQVHAFRDEVIYKEVDRSWRE---SENVAKWPESFASWMESLETLDRTSIANLLAAVRTNEREKAEYGARVVKEARE--TRDHVRLLPRAFATAVSIHYDLPPGNFVADVVTGLKKVILKGQVPADATQDDLFAAIDAIGLDKLAKSG 514          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2538.6914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDS4_ECTSI1.100e-25358.46Pseudouridylate synthase, putative n=1 Tax=Ectocar... [more]
A0A6H5L6M3_9PHAE2.510e-17648.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLA7_9STRA3.640e-9433.47Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
W7U6V3_9STRA2.320e-5229.84Pseudouridylate synthase n=2 Tax=Monodopsidaceae T... [more]
A0A6A3ZI15_9STRA5.410e-5127.67PseudoU_synth_1 domain-containing protein n=5 Tax=... [more]
A0A3F2RKM1_9STRA1.270e-5028.77PseudoU_synth_1 domain-containing protein n=4 Tax=... [more]
A0A329S330_9STRA8.050e-4829.31PseudoU_synth_1 domain-containing protein n=3 Tax=... [more]
A0A067C0B2_SAPPC8.130e-4729.61PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
V9E711_PHYPR1.470e-4627.38tRNA pseudouridine(38-40) synthase n=7 Tax=Phytoph... [more]
A0A485KC76_9STRA3.220e-4629.12Aste57867_2617 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2538contigH-paniculata_contig2538:2542..14440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score736.9
Seed ortholog evalue9.7e-210
Seed eggNOG ortholog2880.D8LDS4
Preferred namePUS1
KEGG koko:K06173,ko:K14016,ko:K20674
KEGG Pathwayko04141,ko04624,map04141,map04624
KEGG ModuleM00400,M00403
Hectar predicted targeting categorysignal peptide
GOsGO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG2553@2759
Ec32 ortholog descriptionPseudouridine synthase I, TruA, alpha/beta domain
Ec32 orthologEc-08_003150.1
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016
Exons9
Model size2802
Cds size2289
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.549391-UTR-H-paniculata_contig2538:2541..30241622929748.549391-UTR-H-paniculata_contig2538:2541..3024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2538 2542..3024 -
1691480994.378394-UTR-H-paniculata_contig2538:2541..30241691480994.378394-UTR-H-paniculata_contig2538:2541..3024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2538 2542..3024 -
1622929748.7213094-UTR-H-paniculata_contig2538:14410..144401622929748.7213094-UTR-H-paniculata_contig2538:14410..14440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2538 14411..14440 -
1691480994.4987142-UTR-H-paniculata_contig2538:14410..144401691480994.4987142-UTR-H-paniculata_contig2538:14410..14440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2538 14411..14440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.5624673-CDS-H-paniculata_contig2538:3024..31441622929748.5624673-CDS-H-paniculata_contig2538:3024..3144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 3025..3144 -
1691480994.3899832-CDS-H-paniculata_contig2538:3024..31441691480994.3899832-CDS-H-paniculata_contig2538:3024..3144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 3025..3144 -
1622929748.579607-CDS-H-paniculata_contig2538:4639..47541622929748.579607-CDS-H-paniculata_contig2538:4639..4754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 4640..4754 -
1691480994.3997002-CDS-H-paniculata_contig2538:4639..47541691480994.3997002-CDS-H-paniculata_contig2538:4639..4754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 4640..4754 -
1622929748.5933917-CDS-H-paniculata_contig2538:5026..51951622929748.5933917-CDS-H-paniculata_contig2538:5026..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 5027..5195 -
1691480994.4186158-CDS-H-paniculata_contig2538:5026..51951691480994.4186158-CDS-H-paniculata_contig2538:5026..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 5027..5195 -
1622929748.6078856-CDS-H-paniculata_contig2538:6657..68831622929748.6078856-CDS-H-paniculata_contig2538:6657..6883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 6658..6883 -
1691480994.4293716-CDS-H-paniculata_contig2538:6657..68831691480994.4293716-CDS-H-paniculata_contig2538:6657..6883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 6658..6883 -
1622929748.6269183-CDS-H-paniculata_contig2538:8971..91151622929748.6269183-CDS-H-paniculata_contig2538:8971..9115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 8972..9115 -
1691480994.4395745-CDS-H-paniculata_contig2538:8971..91151691480994.4395745-CDS-H-paniculata_contig2538:8971..9115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 8972..9115 -
1622929748.6431231-CDS-H-paniculata_contig2538:11038..111471622929748.6431231-CDS-H-paniculata_contig2538:11038..11147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 11039..11147 -
1691480994.449388-CDS-H-paniculata_contig2538:11038..111471691480994.449388-CDS-H-paniculata_contig2538:11038..11147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 11039..11147 -
1622929748.660546-CDS-H-paniculata_contig2538:11876..125511622929748.660546-CDS-H-paniculata_contig2538:11876..12551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 11877..12551 -
1691480994.4590662-CDS-H-paniculata_contig2538:11876..125511691480994.4590662-CDS-H-paniculata_contig2538:11876..12551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 11877..12551 -
1622929748.6825507-CDS-H-paniculata_contig2538:13386..135901622929748.6825507-CDS-H-paniculata_contig2538:13386..13590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 13387..13590 -
1691480994.4762478-CDS-H-paniculata_contig2538:13386..135901691480994.4762478-CDS-H-paniculata_contig2538:13386..13590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 13387..13590 -
1622929748.7028222-CDS-H-paniculata_contig2538:13883..144101622929748.7028222-CDS-H-paniculata_contig2538:13883..14410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 13884..14410 -
1691480994.4886646-CDS-H-paniculata_contig2538:13883..144101691480994.4886646-CDS-H-paniculata_contig2538:13883..14410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2538 13884..14410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2538.6914.1prot_H-paniculata_contig2538.6914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2538 3025..14410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2538.6914.1

>prot_H-paniculata_contig2538.6914.1 ID=prot_H-paniculata_contig2538.6914.1|Name=mRNA_H-paniculata_contig2538.6914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=763bp
MISRSRSCLAARLTTLLAIPYSSGYRGLYATSGPTPTAPKYMLTVPSGTY
AGTSIQASIQAAPKQRLQCLPLLGIASSFSSSRTVLAARTPMVGPAPPPE
PPAPPVLDKDGNELSKRTKRKVALVVGYVGTDFHGWQQSTDRGVRTVEGV
LETALWKAGGIANSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLYPPE
TFAEDGLSQFAKDTLNEHLPADVRCFSVSKVPKSFRGRDECTLREYSYYL
PKHLLPDEAADRKFRSLLDLFVGTHSFHNFASTKGRQLKEVRRRVQASID
RKNLDIKNAQQQQKAGAGEGTGTEDQASLRSQNTSAVAGTKRGRSNKDDW
RTWRHKKKNAVDQDEEDSWYGKSKPSWRKEEVSASAGAGSADRDRAESVP
IGDVAELTTVGKDCEAFGDGDYAEDAGVDEEDTSLGDDEGEVEQEREEVG
DQVEEGPEKVLMLRELRTSIYRCEALDDMVSFQRPGAEKVDEFIRIDIRG
KAFVYNQIRLMIGGALCEARGELFPGFVAAALNTPYRIRVPLAPAEGLVL
ESQAFTRHTNALVLDPRDLASVGGTMAKWGDGSNSGNNMQTTGRLQTLLT
TAQLEECDRWRDEHIVPAVADAWVSRGAAESFLSVVDKFFVGQQDGEELQ
AAIKEHMAKVETTEKAAEEKHNKYRRESKERGSTKYKDLLPKNIATRIVC
KFRLLPGNKVSAIQRGVAKSMEQGKLPALADNDEVLGFIEKMGVDELAIA
GGFNPADIVTAF*
back to top

mRNA from alignment at H-paniculata_contig2538:2542..14440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2538.6914.1 ID=mRNA_H-paniculata_contig2538.6914.1|Name=mRNA_H-paniculata_contig2538.6914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11899bp|location=Sequence derived from alignment at H-paniculata_contig2538:2542..14440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACGAAGTAGGACGTGAGCAAGTAGTCGGATGATATCTCGCTCCCGGTC GTGCTTAGCCGCTCGCCTGACAACCCTGCTGGCGATACCCTATTCCTCGG GCTATCGCGGTCTCTACGCCACCAGTGGCCCCACACCGACTGCCCCCAAG TACATGCTAACCGTCCCCAGCGGCACCTACGCAGGCACCTCGATCCAAGC ATCCATTCAGGCAGCCCCAAAGCAGCGACTGCAGTGTCTCCCACTTCTAG GGATAGCTTCTTCTTTCTCATCATCGCGTACGGTACTGGCAGCCAGGACG CCTATGGTTGGACCCGCCCCTCCCCCGGAGCCCCCGGCGCCGCCTGTTTT AGATAAGGATGGGAACGAGCTCAGCAAGCGGACGAAGCGCAAGGTCGCCT TGGTTGTCGGGTATGTGGGCACGGACTTTCACGGGTGGCAGCAGAGCACA GACAGGGGGGTACGAACCGTGGAGGGGGTGTTGGAGACTGCCCTGTGGAA GGCGGGTGGGATCGCCAACAGCAACTACGGAGACCTAAATAAGATTGGTT GGGGGAGGTAAGGAGAGGTTTATATTAGGTGTTACTGAATTGCTTTTGAC ACGATGGTGGGTTGAAAGGTCGTTTTCGGGGGTGTACGTATGGGGGGCAC GTGTTTGTCGTTGAGCAGTAGACCGCTGTTAGTGGAGATTGTAGATAGAG AGTTCAAATGTATGTGTGTGTGTGCGTGCGTTCATCTACTCTCGGAGATC ACATCGTTCAGAACGAATCATGTCAGATCAAACATGAACAACATGAGTGT GTTTCCGTTTTTTTTCCTTCCGTAACTGCTCGCCACTTGTAAACACATAG AACAAGCCGCACGGACAAGGGCGTACACGCCTCCAAGACGGTGGCGGCGG CGAAGCTTCTCTATCCCCCGGAAACCTTTGCCGAAGATGGACTGTCGCAA TTTGCCAAGGACACGCTCAATGAACACCTACCGGCGGATGTCCGGTGCTT CAGCGTCTCGAAAGTCCCCAAGTCGTTCCGCGGGCGGGATGAGTGCACCC TGCGGCGAGTGCCATGAATTGTTATTCTCCACTGTCCTACCATGGAGTAT GCCTCCGCTGTTATGACGTATAGTGGTATCTCCCTCAAAGTCGTCGTTGT TCTTCAGACGCTGATTATATCATGCACCATAGGATACTCATCTCTCTCGG GTCACCATTGGCTGTGTTGTCATCTAACCCCCGTTGTGCCTTCTCACCGC TACCTCCTCCCAGCTTTTTTCGGTTATTCATATCGGTGGTTCGAAGATGT CGTCAAGCTAAAGAGGTCTCAAACACTTCGTCTACAGGTACCGTAGTCGG TGGATCTGATTCGTGCTATCTGTGACGAGCATATTTCTGAAATTCCTGAA CCCCCGTCCCCTACTCAATATCCGGAGGCGATTCCGCCCATTTTTGGACC AGCTCTCTAGCTGGCCCATCCCCCCAGGGACATTTCCACCTGGGAGAGAT CTCTCACAACAGATCAAAATGGTGTGTGCTCCACATTACATGCCTGAAGT TAGACCAAAGCTAGAGCAGAGCAGTGCATCCACGTAAGCCGGTCCACCGT GGGAGCGTGGCTGGCTCACATCAATTAGTTATTAGCTACCTTCCCCTCGT ACCTCGATGCATTCCTCCGCCCCAATAGCCCCACATCATTGCTCCAGATC AATATCGCTAGTAACCGCAGGGTCTTGATTTGTCACACTCCCTGTTTAAC GTACCTTTCACTGATGTGCATGCATTCTCAATGTACAACTACCATATCTT CAATATAAGAAGTGTAATACGACTGCCGTGCCCTGCCTCTCGCCTCCCTC GCGCGCTCTGTCGTTAATGATCGCCTGTCAATACCGCAGTGAATACTCAT ACTATCTTCCCAAACACCTCCTGCCGGACGAGGCCGCCGACCGAAAGTTT CGCAGCCTACTCGATCTCTTCGTAGGGACGCACAGCTTCCACAACTTCGC CTCCACTAAAGGTAGACAGCTCAAAGAGGTGCGCAGGAGAGTTCAGGCTT CCATCGATAGGAAAAACCTGGACATCAAGAATGCTCAACAGCAGCAGAAG GCGGGCGCAGGGGAGGGGACGGGGACAGAAGATCAGGCATCCCTTCGTTC ACAAAATACCTCCGCTGTAGCTGGCACCAAACGAGGGCGGTCTAATAAAG ACGACTGGAGGACCTGGCGGCACAAGAAAAAAAACGCAGTAGACCAAGAC GAAGAGGACAGTTGGTACGGCAAGAGCAAGCCTTCGTGGAGAAAGGAAGA AGTGAGTGCTAGCGCTGGTGCGGGAAGCGCTGATAGGGATCGGGCGGAAT CAGTGCCGATTGGAGATGTGGCGGAATTGACGACGGTTGGGAAGGATTGT GAAGCCTTCGGGGATGGGGATTATGCGGAGGATGCGGGTGTCGACGAGGA GGATACTTCTCTGGGAGATGATGAGGGAGAGGTGGAGCAGGAGCGGGAGG AAGTCGGAGACCAAGTTGAAGAGGGTCCCGAGAAGGTTCTCATGCTCAGG GAACTGCGGACAAGGTATGGGAATAATTTTACAGTTTTTTACCTCTATCG TATACGCGAAGTTCTCCACTAATTCGCAACCAATATCGTACGAAAAAGGC ACAAACGAGAGGTCGCAACGGTGGATAAACAAGAACGTATTGATCGCGCC TTGAATCTCGACATTTTATACTAATAAAACTCCTTACGAGGTAACTCCTT CCCGAGATCATCTTCCTTTTCTGGCGATAGGTCCGGCAATGGCAAGTACA CTGGTTTTGCGTATCAATCTATTAGATCTTTGTCGATGGATACGTATCCG CAGAAACGCTTGACCATAAATCCACTCTACTACCATGTGTCAGCCTGAAA TAGGGGCACTGATTTTTGGAGAATTACATTCTCCTGAAAGTAGATACCTA AATCTCTTGATCGCGGCAGCCACCCCTGTGCATGTGTGCGTGTGTTTGTG CTTTCTCTTTTTTGCTTGCTTTCATCAACCGGAGTTTTCAACCTTCGTAC CCCCAATTTTTCATGGTCCATTATCTAATAACTAAGGCACACAAAATTTT AGTACGCCGTCCCCCTAAAAGAAGGTGGGTAGGTACACACTCTAGTGGCA AAAGCGGGTACCTACCTACCTTAATCTATCTACCCCTATCAATACTCATG TTTGCAGCTGTCCTTGTTGCATTGCTCTACTATCGCGCTGATGTGACTTC TCGTCGGTTGCTTGATAACCGTCGAACGCACTGCATAACGCAGCATATAT CGATGCGAAGCTCTGGACGACATGGTATCATTCCAGAGGCCCGGGGCGGA GAAAGTAGACGAGTTCATCCGAATCGACATTCGTGGGAAAGCCTTCGTGT ACGTGAGTATCATTACTGTCAGACAGTGTGTACCCTCGCGGAACTTCAAT AATCATGGTCGTACTTGATGCATGGAATCGTGTTTGTCGTTGTCGTGATT CCAGACTATTTTTTTAAACTCTTTACTCAAGTATATCACGAAAAACAAAT ATTTTGTTCGAGCACAGTCAGTTGTTGTGTGTGGGTCGTGGACAAAGCAC TGGAGTATGACCGTACGGGCGCAGTTCAACTCGCCAACGAGAAACTGAAT TAGGGCCAAGGCTTCAAACCTGATTCCGAGAGGTACCCGGTTGTAGGCTG GATACAGTAGCCCGAATTTGCTTCTTTTTGTTATTACCACAAGTGTAAAA TTGAGGGTAACTGTCCTCGACAGGTGTTAGGTGACCATTGCCTCTTTTAA GGTAACTGTCCTCGACAAACGTTGGGTGATTATTGCCACTTTTAAGGTGT CCTTCAGGTGGTCACCACATTATCTCCCTCTTTCTTCGAGTTTTGCTTTG GAAGAATTCAGTTTAGGGGTGACCCGGACCTGACCGGCTGGCGGCGAGGT GTTACAATTTATTTTCTCCGCATGAGCTCTGAAACGTTTTGCTTTCGTCC CCAACCATAGTTGCGACTTGTGTTTTTGGCTCTTATATTATTTTTTTTCT GGTGTATCGATGCCGGGGTTCAAACCCGTGACCTTGAGGACAAGCAGCAG ACGATTTGTCTATCGGTGTCGTCAATGTGAGAACGAGGGTAACTGTCTTC GACAGACGTTGGGTGATTATTACCCCCCTTTTATGGTGTTCTTAAGGTGG CCACCACACAAGTGCTTGAAGAAACGATATAATATAGCTTCACCCAGAAA CGCGTTGGTTTTGGAAGTTGTGATGCACTCTGACGCTGTGTTATTTTCTC TCAATCTGCAGTACGGGATTCACGTGAGCTTGACTCGTGTATATACCAGT GAATAGTGAGAACGCCTATCATACCGTATGTACCCCATCGCTAAACGTAG TTAGTTTAGTTGTACGCTGGCTGCTTTTCATTTCATGGGGTGGTGGAAAG GTCCGTCACCCAATCTTTTGTGGGGTGAGTCGTACGTGTCATCTTGCGGC ACGAAGCCAACTCTTGGACGTTTCATGCGGTCGATACATGGGGAAAATTT CAGGTGTGGCTCAAACAGTTAAGCTGCCCCGTGTAGTCCTTTGGAACTTG ATGACGAGAGAAGTATAGGTGGCTGTGAGTGCTATCCTACGTGATCTTTG CGTGATAAATGTTCTGATGTGTTCAGCTCAGCTCCTCGGGATTCCAAGTA GGTATCCAACCTAGCGCGGTTTAACCTATCGCCTTCGTCAGTTGCTCTAC TTTTGCTAGTAGATATACACAAAGTACACAGCTTTGATTAAGTATGGATT GCGTATCCTCATCCTCGTTGCCAAAATTGATGTACATGGTGACAAGGAAG GAAGGCAAGGTGGATGGGTGGGTAAGCGAGGAGATTCGAAAGATGGCCAG GTGTTTGCGTTATGCCACGTCTATACACAACACATACGCGAATGCTACGG TTACATCCGCTGGAAAAGGCAACAGTCCAGTGCTCCTGCCGTTCCATAAG CTACCCCCCTGTCGAGTGAATTCACATTGCTGAACAGTGAACACAGCGGA ATTTTTCGGTCTGTTGCATAATGCCAACATGGGAGTGTACAACGGAATTA TCACGTGTGCGTGAGAGCTATCATTATACTGATTGTGGTAAGTGGTTGGT TGACGTACAGATGAGAATCCCGGTGGGTGATAGGTGGGGGTTATTGTAGA GGTGATACGCGTTCATCTAAGAACTACTTCATGTTCATGCACAGTACACA TGCGAGTGATTACTCCCTTGTGAAGATATCCCATCTCCATCCCCCCACCC CTCTTATGTACCTGTAAACGCTCAGAATCAAATCCGATTGATGATAGGCG GAGCCCTGTGCGAAGCTAGGGGCGAGCTTTTCCCCGGGTTTGTGGCAGCG GCGCTCAACACCCCCTACCGGATTAGGGTTCCGCTTGCGCCAGCCGAAGG GTTGGTCCTTGAGTCTCAGGTACAGTGGAAGGAAGGCGTGTTTCCATGCT TCTGGTGTGAAGATATGATGTCTATGGTTGTCGGAGAGGCTATGTGTGAG TTTTTGTCTTTTTAACGCACGCGAACGTGGCATGGGTTTGGTGGGCTTTG TTTCTTGTTTTTAGCGGTGGTGGTGATATTTGGGGTGTGTGCTCTGCTGT TATGTTCTCCATCATTTAGGTGTTATGAAGAAGGCATCAAAAGCACGCCG TTGCTGTATCCATGTTTCATGCGTGCATTTGTGTCGTTCTCCACTAGTTG TATTTACATGACAAAAAAATCGTTGTGTTTTTTTTTTCTTTCTTCTTTTT TTTCCCTCTTTTTTGCATACAACACTCTTTCACACATACGACCGAACGCG CCTAGAAATGTAATAACACCGCAGTTAGAATACTGCGGTCAACACCGGTA TTCGGAAGTCGGCACCGTTACCCTGAAGAACTCGATTTTCCTTGTTTGTT ACCGTGTACGGTACAGCAAAACGTGATTACCGCGGTATCAGCTTCTTTTC CGTTTACCATACCTTGAAAATCGTTCACTGTACAGTGGAACCCCGTTACC GTACCCGTGAGTATCCTGTGAACAAGTGGAAAAGCCGCCACGACCGCGGG TCGTGAACGATTGGAATCGCCAAAGAATTGATCGCGGGTCTGACTGAATG TATTCGTGTACCGCGGCACCATGTCTCATGATAATACATAGGAGTGTCGC GGCTCGTGTGGTACTGCGTACCCATAATGGTGGTCGCCAGGCATCAGCAT AAGTATTAACGCCGCAGTTGCTAGAGATTCTAGCTCGAATGCCGCTGGTT CTTCAACCGTTGCTGACTGTGCAGTCACTGTTGCCGCCTCGCGTGTACAG CAGCTCAGCGTGTTATTGACTGCAATGCAATTTGCCCCGAGTCGGTTTTT TCAATTGCTGTTCATGAAAAAGCTGGCGTTCTTTTTTTGCAGGGCTTTCT TAATGTTCTTGCAACGATCATATATACTGACCATGCCGACAAAGGCGGTT ATTGAATTGCATGCAAGAGTCTTGTGGTGTGGCTTGGTATTTTGCTTCAA ACTTGGAACGTTTTGGGATAGTCACGAAACCAAATCAGATGCCGTACCGT ACCGTATGGTACCATGCAAGGAAAAATGGAGTACCGGTTACGGCGCAAAG TCCGAGAAATCTACACACCGTACCGTTTTACCAGTATCTCGAATACTGTT TTGCCAAAATGATACGGAGGAAATCATATACCACACGGTTTAGTCGTTTT ACATGAAGTCATTACCCAGAACAGCCCTGCATAAATCCGCTTTCCGATAA CCTGCAGCCTCCTCCTAAATCTTGCCAAACCTTATGATGATTGATTCTAT AGGTATGCTGTGTGTGCAACGAGTGATTTCATCACCTTGCGGACGGACTA CTTTTATTTAGTTTCTACATACCAGTCCAATGATCACTCAGACCCGCGAT CAGAGAAACGACTTGCTTAATCAGTTTCCTGGGAATGGACAATCGTACAT AATACACGCGGAATAAGCAGGTAGTGATCTTGCATGTCTAAAAACGGGAA TAGGGGCACGATGCCCACCCCCTGGAAAAAGATTGATAAACCTATATTAA TGAATTCGGGAAATCGAAAGATGCGATAAAGAGGCATTTGGAATCCTGAG ATTGCGAAGGGAGACTAAAGCGGTTCTAGGAGATGGAAATTTACCTGAAA AAGCGAGGATAGAGGTACATGAGGTAGGTAATAATGTTTTTGAGCCCGCA GTTGGCAGCATATGAAAAAGCAATTGGCTATGAGAAATCGCTTTGATAGG AGCAAACTTCCATCCTCTCCAGGGCGCGTGACCAATGGCGTAACAACTAC GACATGCAATGCATGAGTATGCCCCCTCCCCTAATTCCGGGTCAGAGTAT ACATTTTGGCATGGATATCTGTGCCGACATGAACATAGACCCTCTCGAAT ATTTGACCGTTACCACCTTAGGATACGGAACGCTAGGAAATTGTATCTGT ATCTGTTAACGTGTTAATGGATTTACATTATGAGTTCCGGTATTCATGTG TGCGCAGGCGTTCACAAGACATACGAACGCGCTCGTGTTGGATCCACGGG ACCTGGCAAGCGTCGGTGGCACCATGGCCAAGTGGGGAGATGGCAGTAAC TCGGGCAACAACATGCAGACCACCGGCCGCCTCCAGACGTTGTTGACGAC GGCACAGCTGGAAGAGTGCGACCGGTGGAGAGACGAGCACATCGTGCCTG CCGTGGCGGACGCTTGGGTTTCTAGAGGAGCAGGTAAGGGGAGGTGGGGG TGGATCAGCGCACGGGGGGGGGGGAGGGCAGTTTCCATGCAAACAATTAG CACCCCGAAACGAAAAAAAAAATCTCTTTCGCCTTCTGGGATTCTCCTTC GTACGTCAACCCACTTGCTACAGTTGGTTGAACTATAGCTTTAACGCTCA TGTTCTAGCGCCATTGTATGGGTGGGTGTCGCGGTGGTGCAGCTAACTTC AAACCTCAGTAGTGTACACTTATCATTGAAATTAGATCAATGGGGGCGGG CGGGGCGGGGTCATTCATCGCTCTATTACGTGTCACGATTACAGTGTAAA ACTTGTTGAACTCAAGCTGAGTTTACGCAGCAAGTACGAATCATGACTGC GCATACTTGGCCAGCAAATCAGCACAAATACCGGGGGTCGGAGGAAGATT GTTAGCCAGGTAACTAGGGGTGTACATTACCAGAAGGTATGTATTATATG GGATATCAAAAATACACAACGGGCATTTTGGGAAAATACCTGGTTTACTA CCGGTAGGGTTTAGTGTGCTTCGCTAACTAGGTATCAGCGTCATTTGTGG TAAATGTGATGTGTAACCGTGGTATTAATTACTTGGCAAGTACGGCAGTT GGGTCATTAAGCTCTGTACTTGTTATCACGTTGGATCACACCAGCGCAGG TGATGAGTTTTTGTCATGTTCGATATTTTGGATGACTGCTGTATTGGTCA GTTACAGGTGGCCCTAAAAGCTGTGTTGTTGGATATATTTACTCGGGAGA TATATGTCATTAGATAGTCAAGTGTACAGACGTGATATATATTCCGGACT ATTTTAAAGAACCAGTATAATAAAGGTGACTATTGGTGACCCACCCTGGG TATAAGAAGGATGTCAACGTACAAACTTTTGTCACATATATATATATATA TATATATTGCACGTACGGTTACGGTGAATGGGCAGAATTTTATTGTTTCG AATTTGGGCAAGAAATCATAACGTCGTAATTCGTTTTTTTTTTCGTGGCG CCACGCCGACGCCCACGTAGAACAATTCGTTTTTATTTTAGTACGCACCT TTGTGTGGAGAGCAGGAACGTTCCTAATGTTCCTGGTGCTCTCAAACCCC GATGGTATCCTACACTACAATCAGCGGAATTTTTGTCCCATCGTCGGAAA AGCTTTTTTTAGTTGCTCTAGTTTATCCTGGACGCGTCGTCTTCTCACTT GGAAGTATGATTCAATATTAGCCACCTGATACTTCGTACTCAATCTCACA TTTTTTTATCCCCCTATTGATCTAGTTTTTTGGTAATAGACATACACAAC TGATCTTAGAGGTTAGCTGCATAACCTACTTCGATATGGATACGATATAT ATATATATTTTACGAACGTCATAGTTTTACTAATTACGCTGTCACCCCTC CCCTCCCCCACCCCCGCCCATCCCCTCTTTTATGTGTGATGACAGCCGAG TCATTTTTGAGCGTTGTTGATAAGTTTTTTGTGGGTCAGCAGGACGGGGA AGAGCTACAGGCGGCGATCAAGGAGCACATGGCCAAGGTAGAGACGACCG AAAAGGCGGCAGAGGAAAAACACAACAAGTACCGCCGGGAGTCGAAGGAG CGAGGCTCTACCAAGTGCGTCTTACTGTCGCACGGCGAAGTAATAGCAAT AGCAATAGTATTTTGGGAGAGCAGCTGACAATCATTTTAAGCTATTTTTG TTGTGATATCTGCGCCAATTTGACACCAATTTCCCATGACCAGGGTACTG AAAACTCCCCGAAGTCTATCCAGAGCACATTTTACGGATTTTTTTTTAGT GTTCTTGCGTACCGCTCGTTTTTTTGCAAGAGTTTCTACTGACACGCAAC TATTGTGTCGAACTGACCCGGGGACACATGTGTCAGGTACAAAGACCTGC TGCCGAAGAATATCGCGACGCGAATTGTGTGCAAGTTCCGACTTCTCCCC GGAAACAAGGTGTCCGCCATTCAGAGGGGGGTCGCCAAGAGCATGGAACA GGTATATATATAGCTTATTTAGAGAACAGCCTTTATTGATCTAATTATGC TCATGAGATTATACAATTGCAGATAAAAAAACACTCCCCTCTTTAAGTTA AGTGGGTTGTGGAATCAGTCACTCCGTAGTGTGAAACGGACTTTAGTATA CCTTCAATTTTGTGTATGTTTCGCGCACTGTATTCCCCCGTTGTGGTCGA GGCTGCCTCTCTGTCATTGGCCAGGGGCGTGTGGAGTGCGGCGTATCTGC TTTCATAGATATTTTGATATTATGGTCTTGGGGTTCTTGCTTCTGCTTGA CGTTTTTTTTTTTTTTTTCTCAAGTGCTTTATTTAAAGCTATCATGGATC TACAGATTTGATCGGGAGCACTGGTACACATCAAATCAAACACTGTCCAG CATTTCGCGTGCAGATTAAAACACAGTAGCAACATGAGAAGAGGATCTTT GTGAGTGACAGGAGAGCAAGCACTTGTTCGTGTATAGCACTTGTGGCCAA GCGGACATCAACCCTTGAGAATGGCGCCGGCTTGCGTGCTTTATATACAG GGTAAAATGAAATAAATGCGGCGAAACTCACGTTTGATTCGTGCGGCGGT GTTCGTAAATTTCGACTTGGTCCTGTATGGCTATGATGGTGAGCTCTAGG TTCCGAAAATTCAGTCCACCTGCACCAACTTCGCGGCACACAATGAATTC CTTTTCAAGATTCGGAAGTTTCGCGAGTTTAACAGATTCTAAAATGGAAT TCGTTTTCTGGGGGGATGTGGGTGCAGGTGGACTGCGATCCGGGAGATGT AGCTTACTATGAGCCATACAGGACTAGAGAGAATATTTTACATATCTTTA GTTTCGCCAACACCCTAGTTATGAGGGTTGTGCATGTATATATATTAGCC CCCCCTTCCTCTCTCCCCTCCGTCTCTCCCCTCCCCTCGCCCGTGATGAT ACATCCATGCTCGTCACACTACACTACGACATCGCACCAATATTTATAGT AGAAATAGAGGTGGTACTGGAGATGTGGTCAGTAATTCTGGATTTGATGC CTGCTGATGTTGAGATGCGCCAGGTATTTTCGGGTCTTTACACTGGCGAT ACTGAGCCATCTCAATGATTTGCCTGTACCTGCCGGGGCTATCCTCAGTA TGTGCGAGAGCTTATTATTCGTGATAGGAGCACCTACTCTGACAGTGGAT ACTGTAAATATTTGAGCTGTGTTCAGTACATCATACTATACAGTGTCGAC GTTCCATAAATTGTTGAAATTTATCCGGGGTGGCTGTAATTATTGGCATC TCTGAATGTTATACTCCTCTTGTTTTGAAAATTGATCATTTGTACCCTTT TTCTGTTCCAGTAGTTTCTTGTTCTTTATTCCAACATACGGTGAAGAGCG TTTCAAGATGTGAGCTGTTTAGCACGTCCGAAGGTACATCATGACCATAC TTTGTTTTTGCTATGCACGTCGTTTGCCTCCTGTCATGAAAATCAGGGAA AGCTGCCGGCCTTAGCGGACAACGACGAAGTGCTGGGTTTCATAGAGAAA ATGGGCGTGGACGAGCTAGCGATAGCCGGAGGATTCAACCCCGCGGATAT TGTGACGGCGTTCTGACTTGCAAGGTTTTAGAAAATGCAGTATTTCCTCT AGTTTTTTGTGGAGGTTAGTTTTTGTTTTAGGGCAGTTGTTAATGGGGAA AACTCGCACTTGAAACACAGCGCTGTTTGTCTTGTAAAAATCGGATTAAA AAAAAGAAGCAAAATAAACTCCAAATTCAAAAAGTAGAAACATCTTGGCC ACGTAGTGAAGGGGTAGAGGATCACTTGGCAGATACAGGACCTAGGTATC CGCACCGTGCGGACGCCCACCAGGGTCGGGTCCAAGATGAGTATAGACGT GATAACCTATTTGTCTTCAAGTATGTTCTGGGGGTTACTACCTTGTAGCG ATATCATATCCAAATGTTAAGATTGCGAACGACATACTCTTGTGTTCCCC AACACCAGCGTTGGTTTTCATGGGTATGTGACTTTATTCGAAACTGGATT CGAGTTGGTGGGGAAGTTAACCTAATCGAAGAAACAAAATTGTGCAGTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2538:2542..14440-

>mRNA_H-paniculata_contig2538.6914.1 ID=mRNA_H-paniculata_contig2538.6914.1|Name=mRNA_H-paniculata_contig2538.6914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4578bp|location=Sequence derived from alignment at H-paniculata_contig2538:2542..14440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATCTCGCTCCCGGTCGTGCTTAGCCGCTCGCCTGACAACCCTGCT
GGCGATACCCTATTCCTCGGGCTATCGCGGTCTCTACGCCACCAGTGGCC
CCACACCGACTGCCCCCAAGTACATGCTAACCGTCCCCAGCGGCACCTAC
GCAGGCACCTCGATCCAAGCATCCATTCAGGCAGCCCCAAAGCAGCGACT
GCAGTGTCTCCCACTTCTAGGGATAGCTTCTTCTTTCTCATCATCGCGTA
CGGTACTGGCAGCCAGGACGCCTATGGTTGGACCCGCCCCTCCCCCGGAG
CCCCCGGCGCCGCCTGTTTTAGATAAGGATGGGAACGAGCTCAGCAAGCG
GACGAAGCGCAAGGTCGCCTTGGTTGTCGGGTATGTGGGCACGGACTTTC
ACGGGTGGCAGCAGAGCACAGACAGGGGGGTACGAACCGTGGAGGGGGTG
TTGGAGACTGCCCTGTGGAAGGCGGGTGGGATCGCCAACAGCAACTACGG
AGACCTAAATAAGATTGGTTGGGGGAGATGATATCTCGCTCCCGGTCGTG
CTTAGCCGCTCGCCTGACAACCCTGCTGGCGATACCCTATTCCTCGGGCT
ATCGCGGTCTCTACGCCACCAGTGGCCCCACACCGACTGCCCCCAAGTAC
ATGCTAACCGTCCCCAGCGGCACCTACGCAGGCACCTCGATCCAAGCATC
CATTCAGGCAGCCCCAAAGCAGCGACTGCAGTGTCTCCCACTTCTAGGGA
TAGCTTCTTCTTTCTCATCATCGCGTACGGTACTGGCAGCCAGGACGCCT
ATGGTTGGACCCGCCCCTCCCCCGGAGCCCCCGGCGCCGCCTGTTTTAGA
TAAGGATGGGAACGAGCTCAGCAAGCGGACGAAGCGCAAGGTCGCCTTGG
TTGTCGGGTATGTGGGCACGGACTTTCACGGGTGGCAGCAGAGCACAGAC
AGGGGGGTACGAACCGTGGAGGGGGTGTTGGAGACTGCCCTGTGGAAGGC
GGGTGGGATCGCCAACAGCAACTACGGAGACCTAAATAAGATTGGTTGGG
GGAGAACAAGCCGCACGGACAAGGGCGTACACGCCTCCAAGACGGTGGCG
GCGGCGAAGCTTCTCTATCCCCCGGAAACCTTTGCCGAAGATGGACTGTC
GCAATTTGCCAAGGACACGCTCAATGAACACCTACCGGCGGATGTCCGGT
GCTTCAGCGTCTCGAAAGTCCCCAAGTCGTTCCGCGGGCGGGATGAGTGC
ACCCTGCGAACAAGCCGCACGGACAAGGGCGTACACGCCTCCAAGACGGT
GGCGGCGGCGAAGCTTCTCTATCCCCCGGAAACCTTTGCCGAAGATGGAC
TGTCGCAATTTGCCAAGGACACGCTCAATGAACACCTACCGGCGGATGTC
CGGTGCTTCAGCGTCTCGAAAGTCCCCAAGTCGTTCCGCGGGCGGGATGA
GTGCACCCTGCGTGAATACTCATACTATCTTCCCAAACACCTCCTGCCGG
ACGAGGCCGCCGACCGAAAGTTTCGCAGCCTACTCGATCTCTTCGTAGGG
ACGCACAGCTTCCACAACTTCGCCTCCACTAAAGGTAGACAGCTCAAAGA
GGTGCGCAGGAGAGTTCAGGCTTCCATCGATAGGAAAAACCTGGACATCA
AGAATGCTCAACAGCAGCAGAAGGCGGGCGCAGGGGAGGGGACGGGGACA
GAAGATCAGGCATCCCTTCGTTCACAAAATACCTCCGCTGTAGCTGGCAC
CAAACGAGGGCGGTCTAATAAAGACGACTGGAGGACCTGGCGGCACAAGA
AAAAAAACGCAGTAGACCAAGACGAAGAGGACAGTTGGTACGGCAAGAGC
AAGCCTTCGTGGAGAAAGGAAGAAGTGAGTGCTAGCGCTGGTGCGGGAAG
CGCTGATAGGGATCGGGCGGAATCAGTGCCGATTGGAGATGTGGCGGAAT
TGACGACGGTTGGGAAGGATTGTGAAGCCTTCGGGGATGGGGATTATGCG
GAGGATGCGGGTGTCGACGAGGAGGATACTTCTCTGGGAGATGATGAGGG
AGAGGTGGAGCAGGAGCGGGAGGAAGTCGGAGACCAAGTTGAAGAGGGTC
CCGAGAAGGTTCTCATGCTCAGGGAACTGCGGACAAGTGAATACTCATAC
TATCTTCCCAAACACCTCCTGCCGGACGAGGCCGCCGACCGAAAGTTTCG
CAGCCTACTCGATCTCTTCGTAGGGACGCACAGCTTCCACAACTTCGCCT
CCACTAAAGGTAGACAGCTCAAAGAGGTGCGCAGGAGAGTTCAGGCTTCC
ATCGATAGGAAAAACCTGGACATCAAGAATGCTCAACAGCAGCAGAAGGC
GGGCGCAGGGGAGGGGACGGGGACAGAAGATCAGGCATCCCTTCGTTCAC
AAAATACCTCCGCTGTAGCTGGCACCAAACGAGGGCGGTCTAATAAAGAC
GACTGGAGGACCTGGCGGCACAAGAAAAAAAACGCAGTAGACCAAGACGA
AGAGGACAGTTGGTACGGCAAGAGCAAGCCTTCGTGGAGAAAGGAAGAAG
TGAGTGCTAGCGCTGGTGCGGGAAGCGCTGATAGGGATCGGGCGGAATCA
GTGCCGATTGGAGATGTGGCGGAATTGACGACGGTTGGGAAGGATTGTGA
AGCCTTCGGGGATGGGGATTATGCGGAGGATGCGGGTGTCGACGAGGAGG
ATACTTCTCTGGGAGATGATGAGGGAGAGGTGGAGCAGGAGCGGGAGGAA
GTCGGAGACCAAGTTGAAGAGGGTCCCGAGAAGGTTCTCATGCTCAGGGA
ACTGCGGACAAGCATATATCGATGCGAAGCTCTGGACGACATGGTATCAT
TCCAGAGGCCCGGGGCGGAGAAAGTAGACGAGTTCATCCGAATCGACATT
CGTGGGAAAGCCTTCGTGTACCATATATCGATGCGAAGCTCTGGACGACA
TGGTATCATTCCAGAGGCCCGGGGCGGAGAAAGTAGACGAGTTCATCCGA
ATCGACATTCGTGGGAAAGCCTTCGTGTACAATCAAATCCGATTGATGAT
AGGCGGAGCCCTGTGCGAAGCTAGGGGCGAGCTTTTCCCCGGGTTTGTGG
CAGCGGCGCTCAACACCCCCTACCGGATTAGGGTTCCGCTTGCGCCAGCC
GAAGGGTTGGTCCTTGAGTCTCAGAATCAAATCCGATTGATGATAGGCGG
AGCCCTGTGCGAAGCTAGGGGCGAGCTTTTCCCCGGGTTTGTGGCAGCGG
CGCTCAACACCCCCTACCGGATTAGGGTTCCGCTTGCGCCAGCCGAAGGG
TTGGTCCTTGAGTCTCAGGCGTTCACAAGACATACGAACGCGCTCGTGTT
GGATCCACGGGACCTGGCAAGCGTCGGTGGCACCATGGCCAAGTGGGGAG
ATGGCAGTAACTCGGGCAACAACATGCAGACCACCGGCCGCCTCCAGACG
TTGTTGACGACGGCACAGCTGGAAGAGTGCGACCGGTGGAGAGACGAGCA
CATCGTGCCTGCCGTGGCGGACGCTTGGGTTTCTAGAGGAGCAGGCGTTC
ACAAGACATACGAACGCGCTCGTGTTGGATCCACGGGACCTGGCAAGCGT
CGGTGGCACCATGGCCAAGTGGGGAGATGGCAGTAACTCGGGCAACAACA
TGCAGACCACCGGCCGCCTCCAGACGTTGTTGACGACGGCACAGCTGGAA
GAGTGCGACCGGTGGAGAGACGAGCACATCGTGCCTGCCGTGGCGGACGC
TTGGGTTTCTAGAGGAGCAGCCGAGTCATTTTTGAGCGTTGTTGATAAGT
TTTTTGTGGGTCAGCAGGACGGGGAAGAGCTACAGGCGGCGATCAAGGAG
CACATGGCCAAGGTAGAGACGACCGAAAAGGCGGCAGAGGAAAAACACAA
CAAGTACCGCCGGGAGTCGAAGGAGCGAGGCTCTACCAACCGAGTCATTT
TTGAGCGTTGTTGATAAGTTTTTTGTGGGTCAGCAGGACGGGGAAGAGCT
ACAGGCGGCGATCAAGGAGCACATGGCCAAGGTAGAGACGACCGAAAAGG
CGGCAGAGGAAAAACACAACAAGTACCGCCGGGAGTCGAAGGAGCGAGGC
TCTACCAAGTACAAAGACCTGCTGCCGAAGAATATCGCGACGCGAATTGT
GTGCAAGTTCCGACTTCTCCCCGGAAACAAGGTGTCCGCCATTCAGAGGG
GGGTCGCCAAGAGCATGGAACAGGTACAAAGACCTGCTGCCGAAGAATAT
CGCGACGCGAATTGTGTGCAAGTTCCGACTTCTCCCCGGAAACAAGGTGT
CCGCCATTCAGAGGGGGGTCGCCAAGAGCATGGAACAGGGAAAGCTGCCG
GCCTTAGCGGACAACGACGAAGTGCTGGGTTTCATAGAGAAAATGGGCGT
GGACGAGCTAGCGATAGCCGGAGGATTCAACCCCGCGGATATTGTGACGG
CGTTCTGAGGAAAGCTGCCGGCCTTAGCGGACAACGACGAAGTGCTGGGT
TTCATAGAGAAAATGGGCGTGGACGAGCTAGCGATAGCCGGAGGATTCAA
CCCCGCGGATATTGTGACGGCGTTCTGA
back to top