mRNA_H-paniculata_contig2535.6900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2535.6900.1
Unique NamemRNA_H-paniculata_contig2535.6900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A6H5JJT0_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT0_9PHAE)

HSP 1 Score: 420 bits (1079), Expect = 9.080e-131
Identity = 279/567 (49.21%), Postives = 332/567 (58.55%), Query Frame = 2
Query:  704 GGEDRSEKP---LTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLV---GEEE---AAAGEIGSDIRSVGERE-TAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATT------------LVSVDTSDGNT---NIGNDERVGRG------FSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQ---VEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPWE 2302
            G  D+S  P   + VTLLSGFLGAGKTTLM NVLRQAR E LS+A+IVNDMAD+N+DAQ+L    G ++   AAAG  GS          T+VAMQDGCICCTL++EL+LEV A+A+EG++DHLIIESTGISDP PVAEA             VE+  +T                  S G+      G  E VG G      +SLDTLVTVVDSTSFL E+RKAD+L+ERGLE+ E DTRTVADLL+SQ   VEFANVILLNK+DL +  ED+  +E +VRRLNP +RV RTVSS V L EV+GTGEF+LEE S+AAGWL+ L+D  +   +SH                                                               +GI SFTFR+RRPFHPERL  FVMEHLPSV+RSKGFLWLATR D  GVWNQAGGSFATEYGG WD+        A             +        VD   VE G         ++ RNELVFIGL   M E +L  EL RCLL++ EM  G  +W+ + +DPFPPWE
Sbjct:  152 GSSDKSATPAAVMKVTLLSGFLGAGKTTLMSNVLRQAREEQLSLAVIVNDMADINVDAQILTLGNGLDQGGIAAAGASGSXXXXXXSSGVTSVAMQDGCICCTLKDELLLEVGAMAKEGKYDHLIIESTGISDPAPVAEAL------------VESDCSTNDIGYFFNGEDXXXXXXXSTGSAAPLERGESEAVGEGGGEGGMYSLDTLVTVVDSTSFLEEVRKADDLEERGLESGEGDTRTVADLLMSQANTVEFANVILLNKSDLATE-EDMAALEGLVRRLNPTARVERTVSSAVGLTEVLGTGEFDLEEASKAAGWLRGLSDDDEDHPHSH---------------------------------------------------------------YGIESFTFRSRRPFHPERLMGFVMEHLPSVLRSKGFLWLATREDSLGVWNQAGGSFATEYGGLWDD-----FHDADEQXXXXXXXXXXEHGAATAATVDDDGVEGG---------SARRNELVFIGL--GMDEKVLRGELQRCLLSEEEMALGSQEWERRFSDPFPPWE 626          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A7S3Y427_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y427_HETAK)

HSP 1 Score: 310 bits (793), Expect = 9.090e-92
Identity = 212/528 (40.15%), Postives = 283/528 (53.60%), Query Frame = 2
Query:  716 RSEKPLTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPW 2299
            +++K L VT+LSGFLG+GKTTL++N+L     EG+ VA+IVNDMA++NID++L+          +G DI    E+   V M++GC+CCTLRE+L+ EV ++A E ++D+L+IESTGIS+P PVAE F     +    T +E  AT                         LDT+VTVVD+  F  E+R ADEL  RGL A E D RTVADLLV+QVEFA+VILLNK DLV  A D+  +E +++RLNP +R+I+T++S V L +V+GTG F+ ++ +QA GWLQ LN             +H+                                                       E +GI SF FRARRPFHPERL  FV+  + +VIRSKGF WLATR+D  GVW+QAGGS+    GG+W     + +  AA          W +   + +    V +   G            R ELVFIG+  D  +  L   L   LLTD EM  GPA W A + D FP W
Sbjct:   29 QTDKKLPVTVLSGFLGSGKTTLLQNIL--TNKEGMKVAVIVNDMAEINIDSKLIKN--------LGVDITVAPEK--MVEMENGCVCCTLREDLLKEVASLAGENKYDYLVIESTGISEPMPVAETFTFRLED---GTALEDVAT-------------------------LDTMVTVVDAAGFPRELRAADELGARGLAAGEGDGRTVADLLVAQVEFADVILLNKIDLVE-ANDVVLVENMIKRLNPDARIIQTINSKVGLQQVVGTGAFDFDKAAQAPGWLQELNG------------EHVPET----------------------------------------------------EEYGISSFIFRARRPFHPERLMDFVVSDMSTVIRSKGFCWLATRNDQMGVWSQAGGSYTQGPGGAW-----WAATPAAE---------WPE---DPEEAACVREDFEG-------PYGDRRQELVFIGMGMDASQ--LRGRLTNALLTDKEMAAGPASWAA-LEDSFPEW 424          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: D7G7B4_ECTSI (Cobalamin synthesis protein, P47K n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B4_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 9.600e-89
Identity = 197/350 (56.29%), Postives = 234/350 (66.86%), Query Frame = 2
Query:  641 LPAAAGEAGVGEFSETVVAAAGGEDRSEKPLT------VTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLV---GEEE---AAAGEIGSDIRSVGERE---TAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNI----------------GNDERVGRG------FSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLND 1579
            LP AAG          VV    G  RS+K  T      VTLLSGFLGAGKTTLM NVLRQAR E LS+A+IVNDMAD+N+DAQLL    G ++   AAAG  GS +   GE     T+VAMQDGCICCTL++EL+LEV A+A+EG++DHLIIESTGISDP PVAEA             VE+  +T  +    DG                    G  E VG G      +SLDTLVTVVDSTSFL E+RKAD+L+ERGLE+ E DTRT+ADLL+SQVEFANVILLNK+DL +  ED+  +E +VRRLNP +RV RTVSS V LAEV+GTGEF+LEE S+AAGWL+  N+
Sbjct:  140 LPTAAG-------GGAVVKGDSGSGRSDKSATPAAAMKVTLLSGFLGAGKTTLMSNVLRQAREEKLSLAVIVNDMADINVDAQLLTLGNGLDQGDLAAAGASGSAV--AGESSSGVTSVAMQDGCICCTLKDELLLEVGAMAKEGKYDHLIIESTGISDPAPVAEAL------------VESDCSTNDTGYFFDGEXXXXXXXXXXXXXXAPLERGESEAVGGGXGEGGMYSLDTLVTVVDSTSFLDEVRKADDLEERGLESGEGDTRTIADLLMSQVEFANVILLNKSDLATE-EDMAALEGLVRRLNPTARVERTVSSAVGLAEVLGTGEFDLEEASKAAGWLRLANE 467          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A410RP89_CORCK (Metal chaperone YciC n=3 Tax=Corallococcus TaxID=83461 RepID=A0A410RP89_CORCK)

HSP 1 Score: 291 bits (746), Expect = 2.350e-85
Identity = 210/527 (39.85%), Postives = 268/527 (50.85%), Query Frame = 2
Query:  731 LTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFS----LDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPW 2299
            L VT+LSGFLGAGKTTL+ +VL     EGL VA+IVNDM++VNIDA+L+ G   AAA      +  V E+   V + +GCICCTLRE+L+ EV  +AREGR D+L+IESTGIS+P PVAE F  A A                                 G+G S    LDTLVTVVD+ +FL +   AD L ERGL A E D RTV DLLV QVEFA+V++LNK DLV+ AED+  + +V+R+LNP + ++      V LA V+ TG F+ E   +A GWL+ L                                                   R    P               E +GI SF FR+R PFHP RL+ F+ E    V+RSKGF WLATRHD+AG+W QAGG+ + E GG W +    + RS   D              + +   ++    VG            R ELVFI    D   +++  EL  CLLT  E+  GPA W A+M DPFP W
Sbjct:   10 LPVTVLSGFLGAGKTTLLNHVLHNR--EGLRVAVIVNDMSEVNIDAKLVGG---AAA------LSRVDEK--LVELSNGCICCTLREDLLREVARLAREGRFDYLLIESTGISEPLPVAETFTFADAS--------------------------------GQGLSEVARLDTLVTVVDALNFLRDWEAADALAERGLTAAEEDERTVVDLLVEQVEFADVLVLNKTDLVT-AEDVARLAQVLRKLNPEANLVTAERGRVPLAAVLNTGRFDFERARRAPGWLKEL---------------------------------------------------RGEHTPET-------------EEYGIRSFVFRSRVPFHPARLWRFIHESWKGVLRSKGFFWLATRHDLAGLWAQAGGACSFEPGGLWWDA---VPRSEWPD--------------DAEARAEIERERVG-------PHGDRRQELVFI--TQDADHEVMARELEACLLTAEELARGPARW-ARMKDPFPDW 399          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A084SIL2_9DELT (CobW C-terminal domain-containing protein n=2 Tax=Archangium TaxID=47 RepID=A0A084SIL2_9DELT)

HSP 1 Score: 287 bits (734), Expect = 1.090e-83
Identity = 209/523 (39.96%), Postives = 271/523 (51.82%), Query Frame = 2
Query:  731 LTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPW 2299
            L VT+LSGFLGAGKTTL+ +VL     EG  VA+IVNDM++VNIDA+L+ G         G+ +  V E+   V M +GCICCTLRE+L++EV  +AREGR DHL+IESTGIS+P PVAE F          T  + +  +L  V                    LDTLVTVVD+ +FL +     EL+ERGL A + D RTV DLLV QVEFA+V++LNK DLVS  E +  +E ++R+LNP +R++R+    V L+EV+ TG F++E+  +A GWLQTL                                                   R    P               E +GIGSF FRARRPFHP RL+ F+      ++RSKGF WLATR D+ GVW QAGG+ A E  G W +    + R             W +           A++E       GD     R ELVFI     + + +L A L  CLLT  EM  GPA W +++ DPFPPW
Sbjct:    6 LPVTVLSGFLGAGKTTLLNHVLNNR--EGRRVAVIVNDMSEVNIDARLVKG---------GASLSRVDEK--LVEMSNGCICCTLREDLLVEVGRLAREGRFDHLLIESTGISEPMPVAETF----------TFADEQGRSLADVA------------------RLDTLVTVVDAFNFLKDWEDTGELRERGLAAGQEDERTVVDLLVEQVEFADVLVLNKTDLVSP-ERLGELESILRQLNPGARLVRSRHGQVPLSEVLETGLFDMEKAQRAPGWLQTL---------------------------------------------------RGEALPET-------------EEYGIGSFVFRARRPFHPGRLWEFIHGSWKGLLRSKGFFWLATRMDVTGVWAQAGGACAFEPAGLWWDA---VPREE-----------WPE------EPESRAELEREMQAPWGD----RRQELVFI--TRQVDQALLRAALEECLLTGEEMAPGPAGW-SQLEDPFPPW 395          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: UPI000E5BCDDC (zinc metallochaperone GTPase ZigA n=1 Tax=Rubrobacter indicoceani TaxID=2051957 RepID=UPI000E5BCDDC)

HSP 1 Score: 286 bits (733), Expect = 1.700e-83
Identity = 206/527 (39.09%), Postives = 263/527 (49.91%), Query Frame = 2
Query:  722 EKPLTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPWE 2302
            E  L VT+LSGFLGAGKTTL+ ++L  A  EGL VA+IVNDM++VNIDA L+           GS +  V E+   V M +GCICCTLRE+L++EV  +AR+GR D+L++ESTGIS+P PVAE F          T  + +  +L  + T                  LDTLVTVVDS  FL E   AD+L  RGL   E D RTV DLLV QVEFANVI+LNK DL+S +E +  +E  VR LNP +R+IR+    V   EV+GTG F+ EE + A GWL  L                                                   R    P               E +GI SF FR+RRPFHPERL+         V+RSKGF WLA+R D+A +W+QAGG    E  G W     + S   +          W +   + +  + V D EVG            R ELVFIG   DM  + ++ +L   LLTD E+  G   W   + DPFP W+
Sbjct:    6 EGRLPVTVLSGFLGAGKTTLLNHML--ANREGLRVAVIVNDMSEVNIDADLVAS---------GSSLNRVDEK--LVEMTNGCICCTLREDLLVEVARLARDGRFDYLLVESTGISEPLPVAETF----------TFPDEEGRSLSDLAT------------------LDTLVTVVDSLGFLREYEAADDLSARGLALSEEDDRTVTDLLVEQVEFANVIVLNKCDLISDSE-LSVLERAVRSLNPKARIIRSEFGVVPTDEVLGTGLFDFEEAAGAPGWLAEL---------------------------------------------------RGEHTPET-------------EEYGISSFVFRSRRPFHPERLWELTKAEWTGVLRSKGFFWLASRRDVAFLWSQAGGILRFEPSGFW-----WASAPKSE---------WPEHGEDVEEILSVWDEEVG----------DRRQELVFIG--RDMDREAMVGDLEDALLTDEELAFGETVWPY-LEDPFPVWQ 399          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A2M8QE28_9CHLR (CobW C-terminal domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2M8QE28_9CHLR)

HSP 1 Score: 285 bits (730), Expect = 2.960e-83
Identity = 209/539 (38.78%), Postives = 275/539 (51.02%), Query Frame = 2
Query:  719 SEKPLTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFSL------DTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPS--VIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGN----WNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPW 2299
            ++ PL VT+LSGFLGAGKTTL+ +VL     EG  VA+IVNDM++VNIDAQL+           G+ +  V E+   V M +GCICCTLRE+L++EV  +AREGR D+L+IESTGIS+P PVAE F           T E                 + +D+  GR FSL      DT+VTVVD+ +FL +  +A++L+ RGL A E D RT+ DLLV QVEFANVI++NK DLV+ +E I  +E ++RRLNP +R++R     V L  V+ TG F+LE+ +QA GWL+ L                                                   R    P               E +G+ S  +RARRPFHP+RL+  V     S  V+RSKGF WLA+R D AG+W+QAG      Y G W                  Y G     W         +   A+VE       GD     R E+VFIG  +D+K D++ A +  CLLTD EM  GP  W+ +  DPFP W
Sbjct:    4 AQSPLPVTVLSGFLGAGKTTLLNHVLNNR--EGRRVAVIVNDMSEVNIDAQLVRD---------GAQLSRVEEK--LVEMTNGCICCTLREDLLVEVARLAREGRFDYLLIESTGISEPLPVAETF-----------TFE-----------------LADDQ--GRSFSLSDVARLDTMVTVVDAYNFLRDFNEAEDLRARGLAAGEEDERTITDLLVEQVEFANVIVINKTDLVNESELI-RLEGILRRLNPDARIVRASHGRVPLDAVLNTGLFSLEKAAQAPGWLKEL---------------------------------------------------RGEHVPET-------------EAYGVSSLVYRARRPFHPQRLWEAVNADWSSANVLRSKGFFWLASRMDEAGLWSQAGALLRIAYAGRW------------------YAGTPREQW--------PDYARAEVEAHWQEPFGD----RRQEIVFIG--ADLKRDLVQAVMDSCLLTDEEMARGPQAWR-RFPDPFPGW 401          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A023X241_9ACTN (Putative GTPases (G3E family) n=1 Tax=Rubrobacter radiotolerans TaxID=42256 RepID=A0A023X241_9ACTN)

HSP 1 Score: 286 bits (732), Expect = 3.170e-83
Identity = 205/534 (38.39%), Postives = 266/534 (49.81%), Query Frame = 2
Query:  710 EDRSEKPLTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFS----LDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPW 2299
            +D S+  L VT+LSGFLGAGKTTL+ +VL  A  EGL VA+IVNDM++VNIDA L+           G+ +  V ER   V M +GCICCTLRE+L++EV  +AR+GR D+L++ESTGIS+P PVAE F                  T +              +  GR  S    LDTLVTVVDS  FL E + AD+L  RGL   E D RTV DLLV QVEFA+VILLNK DL+   E++D +E+ +R+LNP +RV+RT    V + EV+GTG F+ E  +++ GWL+ L                                                   R    P               E +GI SF FRARRPFHPERL+         V+RSKGF WLA+R D+A +W+QAGG    E  G W          +  ++      +W+++   GDR                      R ELVFIG   D+  + ++  L   LLTD E+  G A W     DPFP W
Sbjct:    6 KDGSDGRLPVTVLSGFLGAGKTTLLNHVL--ANREGLRVAVIVNDMSEVNIDASLVAS---------GASLNRVEER--LVEMTNGCICCTLREDLLVEVARLARDGRFDYLLVESTGISEPLPVAETF------------------TFL--------------DEEGRSLSDLARLDTLVTVVDSPQFLKEYQAADDLSGRGLALSEEDDRTVTDLLVEQVEFADVILLNKCDLIEP-EEVDVLEDAIRKLNPGARVLRTEHGVVPVREVLGTGLFDFERAAESPGWLREL---------------------------------------------------RGESVPET-------------EEYGISSFVFRARRPFHPERLWDLAKFQWKGVLRSKGFFWLASRRDVAFLWSQAGGVLRFEPSGFWWAAAPREEWPSEQESLQEILESWDEV--YGDR----------------------RQELVFIG--QDLDREAMVRSLEDALLTDEELALGEAAWPY-FRDPFPRW 402          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A178MBR4_9CHLR (CobW C-terminal domain-containing protein n=1 Tax=Chloroflexus islandicus TaxID=1707952 RepID=A0A178MBR4_9CHLR)

HSP 1 Score: 283 bits (725), Expect = 1.990e-82
Identity = 204/533 (38.27%), Postives = 270/533 (50.66%), Query Frame = 2
Query:  725 KPLTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKET--FGIGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDNGDGFI-----SRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPWE 2302
            +PL VT+LSGFLG+GKTTL+ +VL  A   GL VA+IVNDM+++NIDAQL+   E A +             E  V + +GCICCTLRE+L+LEV  +AREGR D+L+IESTGI++P PVAE F                     +    DG T       +G    LDT+VTVVD+ +F  ++   DEL++R L A + D R++ DLL+ QVEFA+VI+LNK DLV++A D+D +E ++R+LNPA+R+IR+    V L +++ TG F+ E  +Q  GWLQ L                                                                  RG    ET  +GI SF FRARRPFHP+RL+  + E  P V+RSKG  WLATR +  G+W+QAG +   E GG W            +  AA  A   +   W      GDR                      R ELV IG   +M E  L A+L  CLLTDAEM  GPA W+  + DPF  W+
Sbjct:    9 QPLPVTVLSGFLGSGKTTLLNHVL--ANRAGLRVAVIVNDMSEINIDAQLVRAGEAALSR----------TEERLVELTNGCICCTLREDLLLEVARLAREGRFDYLLIESTGIAEPLPVAETF---------------------TFPGPDGAT-------LGEIARLDTMVTVVDAYNFPRDLASLDELRDRDLAAGDEDDRSIGDLLIEQVEFADVIVLNKVDLVAAA-DLDRLEALLRKLNPAARIIRSAFGNVPLDQILNTGLFSFERAAQMPGWLQEL------------------------------------------------------------------RGAHTPETEEYGISSFVFRARRPFHPQRLWDVLHEEWPGVLRSKGIFWLATRMNQCGIWSQAGAACRIEPGG-WXXXXXXXXXXDPTEQAALAAI--WDAQW------GDR----------------------RQELVLIG--QEMDETALRAQLEACLLTDAEMALGPAGWET-LPDPFGSWD 400          
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Match: A0A257AYN9_9BACT (CobW C-terminal domain-containing protein n=1 Tax=Chloracidobacterium sp. CP2_5A TaxID=2012633 RepID=A0A257AYN9_9BACT)

HSP 1 Score: 283 bits (724), Expect = 2.920e-82
Identity = 213/541 (39.37%), Postives = 266/541 (49.17%), Query Frame = 2
Query:  731 LTVTLLSGFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAAGEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLIIESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGNDERVGRGFS----LDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLLVSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSLAEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIXXXXXXXXXXXXXSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFGIGSFTFRARRPFHPERLFAFVM-----EHLPSVIRSKGFLWLATRHDMAGVWNQAGGSFATEYGGSWDN--------GDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVADVEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKGGPADWKAKMADPFPPWE 2302
            L VT+LSGFLGAGKTTL+ ++LR    EG  VA+IVNDM+++NIDAQL V   +AA   +          E  V M +GCICCTLRE+L++EV  +AREGR D+L+IESTGIS+P PVAE F  A                                +  GR  S    LDT+ TVVD+ SFL + R A  L ER LE    D RTVADLL+ QVEFA+VI++NK DLVS AE++  ++ V+RRLNP +R++      V L EV+GTG F+ E  SQ+AGWL+ L                                                   R    P               ET+GI SF +R RRPFHP RL+AF+      +    V+RSKGF WLATR +  GVW+QAGGS   E GGSW          GD  + R+     F G  G         DR                      R ELVFIG    M+ D + A L  CLLT+AE + G   W A + DPF  WE
Sbjct:    8 LPVTVLSGFLGAGKTTLLNHILRNR--EGKRVAVIVNDMSEINIDAQL-VANGDAALNRV---------EEKLVEMSNGCICCTLREDLLIEVGRLAREGRFDYLLIESTGISEPLPVAETFAFA--------------------------------DETGRSLSEVARLDTMATVVDAASFLRDYRAAQSLAERRLELGPDDDRTVADLLIEQVEFADVIIVNKVDLVS-AEELAELQGVLRRLNPEARLMTCRLGEVPLTEVLGTGRFSFERASQSAGWLKEL---------------------------------------------------RGEHVPET-------------ETYGISSFAYRRRRPFHPNRLWAFLHGETGGDEWRGVLRSKGFFWLATRMNAVGVWSQAGGSCRIEPGGSWWATQPEEEWPGDEAL-RNEIRSQFDGLFG---------DR----------------------RQELVFIG-DRRMRRDAIEAALDNCLLTEAEARRGLNAW-AMLPDPFGSWE 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2535.6900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJT0_9PHAE9.080e-13149.21CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S3Y427_HETAK9.090e-9240.15Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7G7B4_ECTSI9.600e-8956.29Cobalamin synthesis protein, P47K n=1 Tax=Ectocarp... [more]
A0A410RP89_CORCK2.350e-8539.85Metal chaperone YciC n=3 Tax=Corallococcus TaxID=8... [more]
A0A084SIL2_9DELT1.090e-8339.96CobW C-terminal domain-containing protein n=2 Tax=... [more]
UPI000E5BCDDC1.700e-8339.09zinc metallochaperone GTPase ZigA n=1 Tax=Rubrobac... [more]
A0A2M8QE28_9CHLR2.960e-8338.78CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A023X241_9ACTN3.170e-8338.39Putative GTPases (G3E family) n=1 Tax=Rubrobacter ... [more]
A0A178MBR4_9CHLR1.990e-8238.27CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A257AYN9_9BACT2.920e-8239.37CobW C-terminal domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2535contigH-paniculata_contig2535:773..8081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue3.3e-80
Seed eggNOG ortholog2880.D7G7B4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size3200
Cds size2331
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.1339805-UTR-H-paniculata_contig2535:772..16401622929747.1339805-UTR-H-paniculata_contig2535:772..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 773..1640 -
1691480993.750255-UTR-H-paniculata_contig2535:772..16401691480993.750255-UTR-H-paniculata_contig2535:772..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 773..1640 -
1622929747.255289-UTR-H-paniculata_contig2535:8080..80811622929747.255289-UTR-H-paniculata_contig2535:8080..8081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 8081..8081 -
1691480993.8334692-UTR-H-paniculata_contig2535:8080..80811691480993.8334692-UTR-H-paniculata_contig2535:8080..8081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 8081..8081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.1519408-CDS-H-paniculata_contig2535:1640..20751622929747.1519408-CDS-H-paniculata_contig2535:1640..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 1641..2075 -
1691480993.7600985-CDS-H-paniculata_contig2535:1640..20751691480993.7600985-CDS-H-paniculata_contig2535:1640..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 1641..2075 -
1622929747.168764-CDS-H-paniculata_contig2535:2315..26451622929747.168764-CDS-H-paniculata_contig2535:2315..2645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 2316..2645 -
1691480993.7690032-CDS-H-paniculata_contig2535:2315..26451691480993.7690032-CDS-H-paniculata_contig2535:2315..2645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 2316..2645 -
1622929747.1890845-CDS-H-paniculata_contig2535:3699..39061622929747.1890845-CDS-H-paniculata_contig2535:3699..3906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 3700..3906 -
1691480993.7780318-CDS-H-paniculata_contig2535:3699..39061691480993.7780318-CDS-H-paniculata_contig2535:3699..3906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 3700..3906 -
1622929747.2011075-CDS-H-paniculata_contig2535:4527..46791622929747.2011075-CDS-H-paniculata_contig2535:4527..4679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 4528..4679 -
1691480993.786973-CDS-H-paniculata_contig2535:4527..46791691480993.786973-CDS-H-paniculata_contig2535:4527..4679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 4528..4679 -
1622929747.2146719-CDS-H-paniculata_contig2535:5631..58331622929747.2146719-CDS-H-paniculata_contig2535:5631..5833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 5632..5833 -
1691480993.7977471-CDS-H-paniculata_contig2535:5631..58331691480993.7977471-CDS-H-paniculata_contig2535:5631..5833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 5632..5833 -
1622929747.225288-CDS-H-paniculata_contig2535:6532..66911622929747.225288-CDS-H-paniculata_contig2535:6532..6691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 6533..6691 -
1691480993.8059149-CDS-H-paniculata_contig2535:6532..66911691480993.8059149-CDS-H-paniculata_contig2535:6532..6691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 6533..6691 -
1622929747.241231-CDS-H-paniculata_contig2535:7234..80801622929747.241231-CDS-H-paniculata_contig2535:7234..8080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 7235..8080 -
1691480993.815014-CDS-H-paniculata_contig2535:7234..80801691480993.815014-CDS-H-paniculata_contig2535:7234..8080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 7235..8080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2535.6900.1prot_H-paniculata_contig2535.6900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2535 1641..8080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2535.6900.1

>prot_H-paniculata_contig2535.6900.1 ID=prot_H-paniculata_contig2535.6900.1|Name=mRNA_H-paniculata_contig2535.6900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=777bp
MNDTLHYPRNMSPASTTRGLSLCCALLVNAAAGTMRRSSVLVAIGFPSTN
NCRGYRRGPHKNILLAVVPPGARPFTRSSSSNSSRGSRWHLSRTISTVIA
TAASTTTTVMGFVVPSIATKAADSRAANRIDRNRVQSSGCRSTKRISPLS
LYSAASVPSIVDSIGSSSSSSSSSSQSYSTRAHMRMARMGDAGGVRRTSW
TKYPSSAFTSIADLPAAAGEAGVGEFSETVVAAAGGEDRSEKPLTVTLLS
GFLGAGKTTLMRNVLRQARAEGLSVAIIVNDMADVNIDAQLLVGEEEAAA
GEIGSDIRSVGERETAVAMQDGCICCTLREELILEVEAIAREGRHDHLII
ESTGISDPTPVAEAFEAAAAEAAANTTVEAKATTLVSVDTSDGNTNIGND
ERVGRGFSLDTLVTVVDSTSFLHEIRKADELQERGLEAEEWDTRTVADLL
VSQVEFANVILLNKADLVSSAEDIDTIEEVVRRLNPASRVIRTVSSTVSL
AEVMGTGEFNLEETSQAAGWLQTLNDKIDHQHYSHDDHQHIDEVSNSHGQ
HGSHSHDRVHGSDYSVGCNGGGSDERKNEAPVLSSSTAATRGPRRKETFG
IGSFTFRARRPFHPERLFAFVMEHLPSVIRSKGFLWLATRHDMAGVWNQA
GGSFATEYGGSWDNGDGFISRSAANDAFGGYTGNWNKLDGNGDRNVDVAD
VEVGGGNGGGDGVNSARNELVFIGLISDMKEDILLAELGRCLLTDAEMKG
GPADWKAKMADPFPPWEEDDDDQEEE*
back to top

mRNA from alignment at H-paniculata_contig2535:773..8081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2535.6900.1 ID=mRNA_H-paniculata_contig2535.6900.1|Name=mRNA_H-paniculata_contig2535.6900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7309bp|location=Sequence derived from alignment at H-paniculata_contig2535:773..8081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAATGACACCCTGCACTATCCCAGAAACATGTCACCTGCCTCCACGA CCAGAGGATTGTCGCTATGTTGCGCTCTTCTCGTTAATGCAGCCGCGGGG ACGATGCGAAGGTCGTCCGTTCTCGTCGCGATTGGATTTCCCTCGACAAA TAACTGTCGTGGATATCGGCGAGGACCGCACAAAAACATCCTGCTAGCGG TTGTACCACCTGGTGCAAGGCCTTTCACCCGCAGCAGCAGCAGCAACAGC AGCCGCGGAAGCAGGTGGCACTTGTCCCGCACCATATCTACTGTCATCGC AACCGCCGCTTCTACAACTACCACTGTCATGGGGTTCGTTGTTCCATCGA TAGCGACCAAGGCTGCTGACAGCCGTGCTGCCAATCGCATCGACAGGAAT AGGGTCCAGTCCAGCGGCTGTAGGAGTACCAAGAGGATCTCACCACTGTC CTTGTACTCCGCTGCCTCAGTTCCATCCATTGTCGATAGCATTGGTAGTA GTAGCAGTAGTAGTAGTAGTAGTAGCCAAAGTTATAGTACTCGCGCGCAT ATGCGCATGGCGCGTATGGGTGATGCCGGCGGCGTGCGTAGAACGTCGTG GACGAAGTATCCATCTTCAGCGTTCACGAGTATTGCCGATCTCCCAGCAG CAGCAGGTGAGGCTGGGGTTGGGGAGTTTTCGGAGACGGTGGTGGCGGCA GCAGGGGGAGAGGATCGCAGCGAAAAGCCGCTAACGGTGACGTTGCTGTC GGGCTTTCTCGGGGCGGGGAAAACCACGCTGATGCGGAACGTGCTGCGGC AGGCAAGGGCGGAGGGTCTGTCCGTGGCTATCATTGTCAACGACATGGTG AGGCGATCAATATAGATGGATAATGTACAAATGAGCGAGCTCGAAATGTC AAGGGCATACTTGTAACGACCCGAAGATACTCTATATTAGCTATTGACCA GTCATGAAAATATTGGGAATCTGTCCTCCAGATTGCTTAACCAGTTCTTG GCAGATAGGTCGTTAGCCTATCTCAGGTGTAAAGTTGGATTGTTTTCCCT CTGAATTAATTGGGCCATATTATATGCTCTTCTGGTTGTTTCGATGTAAG CGTGAAGAGAGAAACAGGCAAACCCCGGACATGGCTGCTTCATAACAACC AAATAAAAAACAAATCTTACACAGAACCCATTAGAGACGGACGTTCTCCT TAGAAGGTTGGTTGAGACACAATCCTTGGATAACAAATATTTATCAAAGA TACAAAAGCCGTTCGACTGACTGTGGGTGCGGCACGGTGTCTTCAATCAT TTGCTTACTCTTGGTCAAAGTGCCTAACGAAAAGACTAGGCTCATGTATA CATGTATGAATATAATTGTATCTTTCGCGTGTGAGGAAAGGCGGACGTAA ACATCGACGCTCAGCTTCTGGTGGGGGAGGAGGAGGCGGCGGCGGGAGAG ATCGGATCTGACATCCGATCGGTTGGCGAGCGTGAGACCGCGGTGGCAAT GCAGGACGGCTGCATCTGCTGCACGCTCAGAGAAGAACTTATTTTAGAGG TGCCGTATTTCCTATTCACCGCCGGGAAAGCAAAACGAGGCAGAGTAGAC TGATTATGTATTCGTGGTCGAACTACAATCCGTGCACCGATCGTTGTGCC ATGTCCAACCGAACCAACTTATCTGCCGTAGTATATTTGAAAGGGTATGA AACACCCCGCCACCCTGGAACCCTCACACCTATGGCAAAAACGGGATTGA ACTCGATTTGTGGAGCTGCTGCAAGCAAGATCCTGCGCGCTGTCGAAATG ATCCATGTGCATATCGATTGACACATCTCAACGAATTGTTTTTCTCCAAC GTTATAACTTTTCGTTTTGTCTTACGACTCATGTAGTTTTTATTTTTTTT TGTTTTTTTTCGAGCTAAATAATATGTAGCTGGGTCTCGTGAAAAGCCTT GAAACCTTGAAGCAACGCGCAATATATAACTCCCTCTCTTGGCTTTCTCG AATGTGTGTAAAAGATACCGCAACCGTACTTGACAGGGTATGCCTATCCA TCACACCCAGCATTTTCAAGCACAATTGATTTTCTCGAAAATTGAGACAC ACGTGGCGTTGGCAGCTACTTCTTCCCACGAAAGACGGACAAAGCGAAAA AAAAAAAAAGTCTGAGTGGTAACCTACAAGTGGACGATTTCGAATTTATA CCTCCCTCCTTGTTTCACTAATATCGCTCAATACTTTGAACCGGCAAGGT GGAGGCCATCGCTCGCGAAGGTCGGCATGACCACCTCATCATCGAGTCCA CCGGTATTTCAGACCCAACGCCTGTGGCAGAGGCATTCGAAGCAGCAGCA GCGGAAGCAGCAGCAAACACGACAGTGGAGGCGAAGGCAACTACCTTGGT CAGCGTGGACACCAGCGATGGCAACACCAACATTGGCAATGATGAGAGAG GTGACTGTGACACACCTAGTTACTTTTGGCGAGCAACAAAATTGCAGTCA CGGAACCCAGGAATTAGGAATGTTATTTTCAGGCTGCTTTTGTTTTTTGC GTCAAATTGTGATTTTTCGAAATTTTCTCGACCAGTAGTTCGATGTCGAA CTTCGCGAATTCAAGGATATAAATGAAAGCTCCTACATGGGTCGGGTACT AGCAAGGCACACATGTATAAGGGAATCTCACGCTAGATGTAAAAAATGCC CCCCTTCTAGATGAGATAGAGGTATAGCTCCCTCCCAAATCAGATTGCTC GCTCCTATTCATAAATAGGTTCCGTCGCGGTTACGGAAAATCACCGTCCT AACTTATTTTCAAACGTGTTTGACCCTGATTTGCATTCTGAAATTTTTCG AGCGGCTCGGTTCTACGTAGCGTTATCGCAAGCAGACGGGAGGCACCTCC GAACGTTACACCGTAGCAACCGCAAGAGCCCAAAAGAAAAATGCGCAAGA ATATACCTCGGTCGTGCAATTTGGTGCATTCTTTGCGTTCCGTCCATCTT ATTGCATGTCCTTGCAACATCCTCCGTACGTGTCCGAATTCAGGTGACCG ACTGACCGCACTATTCACCGAAATCCTGGTGTAATTAGTTCAAATATAAT ACAGTATTCATCCGTACATACAGACATACATGCGTAAAGCTCTACACACA TAGCTCTACTTATATCTACACAGACACAATACATACATGCATACTAGCGG TTGAGTCAAGGTTATGTATGTGATGTCCGTGTTTGTCGTCGACCCACGGT CTCACTACAATCGCATGAAGATTCGTTTGTTAGGATTTACCTGCGTACAG ACTAGGAAAATCTTCCGGAGCGACGACGACGACCACCTTACCGTATTAAT CAATCGACTAATTCAATACTTGAAAGGATATTTGTCTGTTTTGTTTCATC AGTCGGCAGGGGGTTCTCCCTGGACACGCTAGTGACCGTGGTGGATTCCA CATCGTTCTTGCATGAGATTCGAAAGGCAGACGAGTTGCAGGAGCGGGGA CTGGAGGCCGAAGAGTGGGACACCCGAACTGTCGCTGATCTGCTCGTGTC GCAGGTGAGCACATTTTGCAGTATGCTCCTGGCGTCCAACTCTCTTTGCA CTTCTACTGGTCGGCTTTGTTTACCACGTTCGGCGAGCCTTTACCTGTTG ACAGCTAGCGTATTGCTTCGGCGTTTCTCGGCAAAGTTCATCGACTTCGG CAGGCTTTCATCTGAGTAAAGAACTTGTGACACAACGTTAGACTTGTCCG AAAAGATAGGGCCTAGCCAGTCGTATCAGTCGTCGGGACAGTAGTATTAA GGAATCCGTGTAAGAAGGAGTTCCATGCTCAGTCCAGGATCAATTCGGAT TTGAAATATATAGATGTACATATATATTTGTTGATTTTCCCTCCAAGTTT GTCATTATTCCATGCTTGGTTGCGCTCTCTCTTTTCGTGAATGTGTTTTG TCTTTCGTCCATATCCGACCGGCTTATTCCCCAGTTTTGGCAGGAAGGCA AGCACGGAATGTATCAGCCCTTTTCTCACATTGAAAAGAAGGGTCAAGGA AATCCCAGGCTCACTCAGTCCACGGAACCCTTTCTTGGCTTGTGTATTTT GTTTGTTTCTCTGTCTGTCTATCTGTCTTCGTCTGTCTCTGTCTGCCTTT TCTTATTGAAATCGCCATTCACCAGGTGGAATTTGCAAACGTCATTCTGC TCAACAAGGCGGATTTGGTGAGCAGCGCCGAAGACATAGACACCATTGAA GAAGTCGTCCGCCGGTTAAACCCTGCATCTAGGGTCATAAGGACAGTCAG CTCCACTGTCAGCTTAGCGGAGGTGATGGGTACGGGGGAGTTCAATCTCG AGGAGACTTCACAGGCTGCCGGATGGTTGCAGGTAAATATTCCGGTTCGG GATCAACGTATAGTTAGGGAATAAATTTCACCCTTGTGCCAATCAAATTC CTTCAATTTTGTCCACCAATTCGAAACCAAATCCCCTGATACCACGTGGA AATAACCACCCGCACTGGTGGGCATACATTGGTAAACAATCCTGGTATCA CCAGGGAATTAATCAACGTATTCTGGTATTATCCACCGGTTGACTGACTT AATTAGTCAACTCTGGTATGATTCATTTGTTCATCATGAAATAATCGATC AATTCTGGTACAATGAATAACTAATTTAGTCAACTAACTAATTGATCATT GGTTGATGGTTAGGAACGGGGAGATTGGTCGTTAATTTCTTTTTTTTTCA GCACAGGTGGGGCCTTTCATATGTTTACGTTGTAACTTCCAAACCCGGTT TACTCCTCTTGTCGGTTTCGCAACCTTGAGAATAACCCTATTTTTATCTT AACAGTGGGGTGGTGGTATGATAGTCATCGTTTCGGAACATTTTTCAGAT CCGTACTTGAGAAGTTCTAGAACTGGATCTTGACGGGTTTTGTGTCCTGC ATATTTTTCACGAGGACAGCGAGCCGATTGTCGACGTGAGTCGAGGATGA AACGCGAACTGTAAGGGCTTGAGTAGCCGTGGCTCTACTGCTAGTATAGT TCTGACTAGAGGTTTTGATTATGGTACCACATTTCTATACAGTACGGCAG AACTCCAAGTTACGGTTTCTAACGGCAGAGAGGTTCTAGCTAGTACACCA GTAAACCTCCGCGCGCTCCCGCCTTCCCCCGTCGCGTACGCGCCCTGATA AAGTGTACTGGCGCTGATGACAACACGCAGTAAAAAAATGTAAGCCGCGT GATCTCAGCATGACAAGTACCCCTGGTGTAAAGTATATTGTAATTCAGCA TATGTAAAACAAATGAGCACGTTTTTCCTTCTTTTTTCATGAATTTGCTA CATAAAACTTCATTTGTGCAGCAGCACCCACCCACCCACCCGCCCGCCAA CCTACCCACCCACCCATCCGATCTGTGCTTTTGCAGACTTTGAATGACAA GATTGATCACCAACACTACAGCCACGACGACCACCAACACATAGATGAAG TTAGCAATAGTCACGGCCAACACGGTAGCCACAGTCATGACCGTGTCCAC GGTTCTGACTACTCGGTCGGCTGCAACGGCGGCGGTTCCGATGAACGAAA AAATGAAGCACCAGTACTGTCATCTTCCACGGCAGCGACAAGAGGCCCGA GACGAAAGGAAACGTTCGGCATCGGCAGCTTTACGTTCCGCGCGCGGCGA CCCTTTCACCCAGAGCGCCTCTTCGCCTTCGTGATGGAACACCTCCCATC GGTGATTCGCTCAAAGGTGCGCCGAGAGAACGACAGAGAGACAGGAAAGA CAGAGAGAGCTGGTGCTACCGTACCAAGATCATCGAGCGGGAACCCCAAT CAGCAAGCCTGCTCTAGCCAAGCTTGAAGACTCGTAAGCAGCAGTAAGTC TTGTTGTTTTTTCTCTTTCTTTTACCTTTGCAAACCTAGTCCGCATCCCC CTCCTCCCGCTCCTCCACTTGCCTATTTTTTCCATGACCAAAATGTTCGT GTCCAGGGTTTCTTGTGGCTCGCAACCCGGCACGACATGGCCGGCGTGTG GAACCAAGCGGGGGGCTCTTTCGCGACAGAATACGGCGGTTCTTGGGACA ACGGCGACGGTTTCATTTCTCGCAGTGCTGCTAACGATGCGTTCGGCGGT TACACTGGCAATTGGAATAAGCTTGATGGTAATGGCGATAGGAACGTAGA TGTCGCCGACGTCGAAGTTGGTGGTGGTAATGGTGGAGGTGATGGTGTCA ACAGCGCGCGGAACGAACTGGTGTTCATCGGGCTTATCTCGGATATGAAA GAAGACATTTTGCTGGCGGAATTGGGTCGGTGTTTGCTGACGGACGCGGA GATGAAGGGCGGACCTGCGGACTGGAAGGCGAAAATGGCGGACCCTTTCC CTCCGTGGGAAGAGGATGATGATGATCAAGAGGAAGAGTAAGATTGTGCG GTGGATATGTGTGATACTTGAAGAATTGAAGAATTTTTGTAGGTGCTATG TCATCAATTGATCGTCCGAGATCAGTAGCTTATGATGACCCCCGAACACG GGGAGGAAATTAGGGGAGGTGGGATGTTGTCCTTGTAGTTAATCATGGAT ACACTTGTATTTAATGATAGTAGCGGTCAATCGGGATCGGAACGGGAGGG CAATTAGGGGGAGTTGGCGTGTTGTCCTTGTTGATCATGGATGCACTTAT ATTTCATCATTGTAGCGGTCATTAGGCATCCGCTCTACGTAAAATCTCCA CCAAAAATTTTATCTAAGAATACAGGGGCGGACAAAGCTACGCTCCGGAG CCTCCGCTTTTCAGATAGTCATCGTAGTGCAGAAATCACCTATTATAACA TCGATAGAGAGGGAATTGATAAAGCTCTGTTCACAGCAATCGACACACGA CTGCAGCGCTCGATGTTTATTTATTGTTGGGTTAGTTTTTGCTTCGAAAG AACCTTCGGCACCCGACCGATTAATAATGAAATATATAGCTGAAAAAAGA ACACCTAGGCGAATGTGAAGGTCTATCTCATGCAGATACCAAGCCAGTTC GCTGCGGTATTTTCTTCTCGTTCTGTCGTTGGCATATCGTTTTTCATATG GAATGATTTGTTTGACTTAGTCTCATCTGTAATGTCGCACCCTTATGATG AATGAATAATGCTGCGAGAGTCTAATAAACGTCGAGTTTCGCGACATTTG TACTCTTATTTCATGTGTTTCGAGCTGTGCATGGCAGCAAAAGATATTCG TGCAATGAGAATTTCAGATTTTGCCTGATCGAAGGGTAAAAAGCTAGAAC TGATATTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2535:773..8081-

>mRNA_H-paniculata_contig2535.6900.1 ID=mRNA_H-paniculata_contig2535.6900.1|Name=mRNA_H-paniculata_contig2535.6900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4662bp|location=Sequence derived from alignment at H-paniculata_contig2535:773..8081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGACACCCTGCACTATCCCAGAAACATGTCACCTGCCTCCACGAC
CAGAGGATTGTCGCTATGTTGCGCTCTTCTCGTTAATGCAGCCGCGGGGA
CGATGCGAAGGTCGTCCGTTCTCGTCGCGATTGGATTTCCCTCGACAAAT
AACTGTCGTGGATATCGGCGAGGACCGCACAAAAACATCCTGCTAGCGGT
TGTACCACCTGGTGCAAGGCCTTTCACCCGCAGCAGCAGCAGCAACAGCA
GCCGCGGAAGCAGGTGGCACTTGTCCCGCACCATATCTACTGTCATCGCA
ACCGCCGCTTCTACAACTACCACTGTCATGGGGTTCGTTGTTCCATCGAT
AGCGACCAAGGCTGCTGACAGCCGTGCTGCCAATCGCATCGACAGGAATA
GGGTCCAGTCCAGCGGCTGTAGGAGTACCAAGAGGATCTCACCACTGTCC
TTGTACTCCGCTGCCTCAGTTCCATCCATTGTCGATAGCATTGGTAGTAG
TAGCAGTAGTAGTAGTAGTAGTAGCCAAAGTTATAGTACTCGCGCGCATA
TGCGCATGGCGCGTATGGGTGATGCCGGCGGCGTGCGTAGAACGTCGTGG
ACGAAGTATCCATCTTCAGCGTTCACGAGTATTGCCGATCTCCCAGCAGC
AGCAGGTGAGGCTGGGGTTGGGGAGTTTTCGGAGACGGTGGTGGCGGCAG
CAGGGGGAGAGGATCGCAGCGAAAAGCCGCTAACGGTGACGTTGCTGTCG
GGCTTTCTCGGGGCGGGGAAAACCACGCTGATGCGGAACGTGCTGCGGCA
GGCAAGGGCGGAGGGTCTGTCCGTGGCTATCATTGTCAACGACATGATGA
ATGACACCCTGCACTATCCCAGAAACATGTCACCTGCCTCCACGACCAGA
GGATTGTCGCTATGTTGCGCTCTTCTCGTTAATGCAGCCGCGGGGACGAT
GCGAAGGTCGTCCGTTCTCGTCGCGATTGGATTTCCCTCGACAAATAACT
GTCGTGGATATCGGCGAGGACCGCACAAAAACATCCTGCTAGCGGTTGTA
CCACCTGGTGCAAGGCCTTTCACCCGCAGCAGCAGCAGCAACAGCAGCCG
CGGAAGCAGGTGGCACTTGTCCCGCACCATATCTACTGTCATCGCAACCG
CCGCTTCTACAACTACCACTGTCATGGGGTTCGTTGTTCCATCGATAGCG
ACCAAGGCTGCTGACAGCCGTGCTGCCAATCGCATCGACAGGAATAGGGT
CCAGTCCAGCGGCTGTAGGAGTACCAAGAGGATCTCACCACTGTCCTTGT
ACTCCGCTGCCTCAGTTCCATCCATTGTCGATAGCATTGGTAGTAGTAGC
AGTAGTAGTAGTAGTAGTAGCCAAAGTTATAGTACTCGCGCGCATATGCG
CATGGCGCGTATGGGTGATGCCGGCGGCGTGCGTAGAACGTCGTGGACGA
AGTATCCATCTTCAGCGTTCACGAGTATTGCCGATCTCCCAGCAGCAGCA
GGTGAGGCTGGGGTTGGGGAGTTTTCGGAGACGGTGGTGGCGGCAGCAGG
GGGAGAGGATCGCAGCGAAAAGCCGCTAACGGTGACGTTGCTGTCGGGCT
TTCTCGGGGCGGGGAAAACCACGCTGATGCGGAACGTGCTGCGGCAGGCA
AGGGCGGAGGGTCTGTCCGTGGCTATCATTGTCAACGACATGGCGGACGT
AAACATCGACGCTCAGCTTCTGGTGGGGGAGGAGGAGGCGGCGGCGGGAG
AGATCGGATCTGACATCCGATCGGTTGGCGAGCGTGAGACCGCGGTGGCA
ATGCAGGACGGCTGCATCTGCTGCACGCTCAGAGAAGAACTTATTTTAGA
GGCGGACGTAAACATCGACGCTCAGCTTCTGGTGGGGGAGGAGGAGGCGG
CGGCGGGAGAGATCGGATCTGACATCCGATCGGTTGGCGAGCGTGAGACC
GCGGTGGCAATGCAGGACGGCTGCATCTGCTGCACGCTCAGAGAAGAACT
TATTTTAGAGGTGGAGGCCATCGCTCGCGAAGGTCGGCATGACCACCTCA
TCATCGAGTCCACCGGTATTTCAGACCCAACGCCTGTGGCAGAGGCATTC
GAAGCAGCAGCAGCGGAAGCAGCAGCAAACACGACAGTGGAGGCGAAGGC
AACTACCTTGGTCAGCGTGGACACCAGCGATGGCAACACCAACATTGGCA
ATGATGAGAGAGGTGGAGGCCATCGCTCGCGAAGGTCGGCATGACCACCT
CATCATCGAGTCCACCGGTATTTCAGACCCAACGCCTGTGGCAGAGGCAT
TCGAAGCAGCAGCAGCGGAAGCAGCAGCAAACACGACAGTGGAGGCGAAG
GCAACTACCTTGGTCAGCGTGGACACCAGCGATGGCAACACCAACATTGG
CAATGATGAGAGAGTCGGCAGGGGGTTCTCCCTGGACACGCTAGTGACCG
TGGTGGATTCCACATCGTTCTTGCATGAGATTCGAAAGGCAGACGAGTTG
CAGGAGCGGGGACTGGAGGCCGAAGAGTGGGACACCCGAACTGTCGCTGA
TCTGCTCGTGTCGCAGTCGGCAGGGGGTTCTCCCTGGACACGCTAGTGAC
CGTGGTGGATTCCACATCGTTCTTGCATGAGATTCGAAAGGCAGACGAGT
TGCAGGAGCGGGGACTGGAGGCCGAAGAGTGGGACACCCGAACTGTCGCT
GATCTGCTCGTGTCGCAGGTGGAATTTGCAAACGTCATTCTGCTCAACAA
GGCGGATTTGGTGAGCAGCGCCGAAGACATAGACACCATTGAAGAAGTCG
TCCGCCGGTTAAACCCTGCATCTAGGGTCATAAGGACAGTCAGCTCCACT
GTCAGCTTAGCGGAGGTGATGGGTACGGGGGAGTTCAATCTCGAGGAGAC
TTCACAGGCTGCCGGATGGTTGCAGGTGGAATTTGCAAACGTCATTCTGC
TCAACAAGGCGGATTTGGTGAGCAGCGCCGAAGACATAGACACCATTGAA
GAAGTCGTCCGCCGGTTAAACCCTGCATCTAGGGTCATAAGGACAGTCAG
CTCCACTGTCAGCTTAGCGGAGGTGATGGGTACGGGGGAGTTCAATCTCG
AGGAGACTTCACAGGCTGCCGGATGGTTGCAGACTTTGAATGACAAGATT
GATCACCAACACTACAGCCACGACGACCACCAACACATAGATGAAGTTAG
CAATAGTCACGGCCAACACGGTAGCCACAGTCATGACCGTGTCCACGGTT
CTGACTACTCGGTCGGCTGCAACGGCGGCGGTTCCGATGAACGAAAAAAT
GAAGCACCAGTACTGTCATCTTCCACGGCAGCGACAAGAGGCCCGAGACG
AAAGGAAACGTTCGGCATCGGCAGCTTTACGTTCCGCGCGCGGCGACCCT
TTCACCCAGAGCGCCTCTTCGCCTTCGTGATGGAACACCTCCCATCGGTG
ATTCGCTCAAAGACTTTGAATGACAAGATTGATCACCAACACTACAGCCA
CGACGACCACCAACACATAGATGAAGTTAGCAATAGTCACGGCCAACACG
GTAGCCACAGTCATGACCGTGTCCACGGTTCTGACTACTCGGTCGGCTGC
AACGGCGGCGGTTCCGATGAACGAAAAAATGAAGCACCAGTACTGTCATC
TTCCACGGCAGCGACAAGAGGCCCGAGACGAAAGGAAACGTTCGGCATCG
GCAGCTTTACGTTCCGCGCGCGGCGACCCTTTCACCCAGAGCGCCTCTTC
GCCTTCGTGATGGAACACCTCCCATCGGTGATTCGCTCAAAGGGTTTCTT
GTGGCTCGCAACCCGGCACGACATGGCCGGCGTGTGGAACCAAGCGGGGG
GCTCTTTCGCGACAGAATACGGCGGTTCTTGGGACAACGGCGACGGTTTC
ATTTCTCGCAGTGCTGCTAACGATGCGTTCGGCGGTTACACTGGCAATTG
GAATAAGCTTGATGGTAATGGCGATAGGAACGTAGATGTCGCCGACGTCG
AAGTTGGTGGTGGTAATGGTGGAGGTGATGGTGTCAACAGCGCGCGGAAC
GAACTGGTGTTCATCGGGCTTATCTCGGATATGAAAGAAGACATTTTGCT
GGCGGAATTGGGTCGGTGTTTGCTGACGGACGCGGAGATGAAGGGCGGAC
CTGCGGACTGGAAGGCGAAAATGGCGGACCCTTTCCCTCCGTGGGAAGAG
GATGATGATGATCAAGAGGAAGAGTAAGGTTTCTTGTGGCTCGCAACCCG
GCACGACATGGCCGGCGTGTGGAACCAAGCGGGGGGCTCTTTCGCGACAG
AATACGGCGGTTCTTGGGACAACGGCGACGGTTTCATTTCTCGCAGTGCT
GCTAACGATGCGTTCGGCGGTTACACTGGCAATTGGAATAAGCTTGATGG
TAATGGCGATAGGAACGTAGATGTCGCCGACGTCGAAGTTGGTGGTGGTA
ATGGTGGAGGTGATGGTGTCAACAGCGCGCGGAACGAACTGGTGTTCATC
GGGCTTATCTCGGATATGAAAGAAGACATTTTGCTGGCGGAATTGGGTCG
GTGTTTGCTGACGGACGCGGAGATGAAGGGCGGACCTGCGGACTGGAAGG
CGAAAATGGCGGACCCTTTCCCTCCGTGGGAAGAGGATGATGATGATCAA
GAGGAAGAGTAA
back to top