mRNA_H-paniculata_contig25319.6891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25319.6891.1
Unique NamemRNA_H-paniculata_contig25319.6891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25319.6891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25319contigH-paniculata_contig25319:2249..3389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size498
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25319.6891.1prot_H-paniculata_contig25319.6891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25319 2255..3389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.2123373-UTR-H-paniculata_contig25319:2248..22541622929746.2123373-UTR-H-paniculata_contig25319:2248..2254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25319 2249..2254 +
1691480993.3237295-UTR-H-paniculata_contig25319:2248..22541691480993.3237295-UTR-H-paniculata_contig25319:2248..2254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25319 2249..2254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.2232802-CDS-H-paniculata_contig25319:2254..24041622929746.2232802-CDS-H-paniculata_contig25319:2254..2404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25319 2255..2404 +
1691480993.333315-CDS-H-paniculata_contig25319:2254..24041691480993.333315-CDS-H-paniculata_contig25319:2254..2404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25319 2255..2404 +
1622929746.2372358-CDS-H-paniculata_contig25319:3041..33891622929746.2372358-CDS-H-paniculata_contig25319:3041..3389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25319 3042..3389 +
1691480993.34791-CDS-H-paniculata_contig25319:3041..33891691480993.34791-CDS-H-paniculata_contig25319:3041..3389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25319 3042..3389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25319.6891.1

>prot_H-paniculata_contig25319.6891.1 ID=prot_H-paniculata_contig25319.6891.1|Name=mRNA_H-paniculata_contig25319.6891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MMGGRGGYPQHQMGRPPPPPGHMMNNRGMGHHHPMGIPQHHMGGVPMGMP
PGVPYGMYSGGGSRGRPPMNMGMPPPPPNVNMGRPPPLPPAPQPPTPSSG
AEPPPAAGAGAGTGAAAPPPPPPQRQPSRDGGGDPPPPPPPHANGGGGGG
AGAAGGPPRGPPPPSA
back to top

mRNA from alignment at H-paniculata_contig25319:2249..3389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25319.6891.1 ID=mRNA_H-paniculata_contig25319.6891.1|Name=mRNA_H-paniculata_contig25319.6891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-paniculata_contig25319:2249..3389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTATGATGGGGGGGCGGGGAGGGTACCCGCAGCATCAGATGGGGAG
GCCTCCGCCTCCTCCGGGACACATGATGAACAATCGAGGGATGGGACATC
ATCATCCCATGGGCATTCCGCAGCATCACATGGGGGGGGTGCCCATGGGC
ATGCCGGTGAGGAGGGGTTGTGGCGGTTGTATAGTGCTGGTTTAGTGTGT
ATGTGTGTGTGTTCGGGGGGGGGGGGGGGGGGGGGGCGGGGCGGTGCTCT
TGTCGGTTGGCTTCGATCTTCAGTTTTAATTACGTGAGCAATATTAATTC
CATATACGGGGCTCTTGTTATGTGATAAAGGGTGCCTCACTTTTTTGTTT
GTCATGAGGGACCCTGAAGCTGTAGGTTGGAGATGTTTTTTCCAGGAGAG
TAATCAGACGGCTGAATTCGCCTACAGATCAGGAAGGAGAAAGGATGTCC
GGGTAGCGACTCTCGGGATCGATAAAAATGTCATGCTTGGGTCGTTATCA
ATACCCTCCATTTTCAGGTGACAGATATCGCTGTTGTATTTGTGCAAGGC
AATGGTGTCTTATGTTGAAGGCGAGGGTTTCGTTGTATTGTGACATGCTG
TTCGACGAGGTTTGTGTCTCGTGTTTATCTCTCTTTAGTATTATGTTTGA
ATTAAAGTTGGTAGTTGACTTTGTGTTGCGTTTACTTGATGTGTTCTGGT
CTCTTAACCAAAACAACTATTAGTCTCTTTCTGGTCATGAACCTTACCCC
CCTCCCCCCCCCTTCGGTCTCCCCCATTATACCAACTCCGTAGCCGGGAG
TACCCTATGGTATGTACAGTGGTGGCGGCAGCAGAGGCCGCCCCCCCATG
AACATGGGCATGCCCCCGCCGCCTCCAAATGTGAACATGGGTCGCCCGCC
GCCGCTGCCGCCGGCACCCCAGCCACCCACCCCTTCTTCTGGTGCGGAGC
CCCCCCCTGCAGCAGGGGCAGGAGCGGGGACGGGCGCGGCGGCTCCGCCG
CCGCCACCCCCGCAGCGTCAGCCGTCGCGAGACGGCGGGGGCGATCCGCC
GCCGCCGCCGCCGCCGCATGCCAACGGCGGGGGGGGGGGGGGGGCGGGGG
CGGCGGGGGGGCCCCCCCGGGGTCCCCCCCCTCCGTCGGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25319:2249..3389+

>mRNA_H-paniculata_contig25319.6891.1 ID=mRNA_H-paniculata_contig25319.6891.1|Name=mRNA_H-paniculata_contig25319.6891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig25319:2249..3389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGGGGGCGGGGAGGGTACCCGCAGCATCAGATGGGGAGGCCTCC
GCCTCCTCCGGGACACATGATGAACAATCGAGGGATGGGACATCATCATC
CCATGGGCATTCCGCAGCATCACATGGGGGGGGTGCCCATGGGCATGCCG
ATGATGGGGGGGCGGGGAGGGTACCCGCAGCATCAGATGGGGAGGCCTCC
GCCTCCTCCGGGACACATGATGAACAATCGAGGGATGGGACATCATCATC
CCATGGGCATTCCGCAGCATCACATGGGGGGGGTGCCCATGGGCATGCCG
CCGGGAGTACCCTATGGTATGTACAGTGGTGGCGGCAGCAGAGGCCGCCC
CCCCATGAACATGGGCATGCCCCCGCCGCCTCCAAATGTGAACATGGGTC
GCCCGCCGCCGCTGCCGCCGGCACCCCAGCCACCCACCCCTTCTTCTGGT
GCGGAGCCCCCCCCTGCAGCAGGGGCAGGAGCGGGGACGGGCGCGGCGGC
TCCGCCGCCGCCACCCCCGCAGCGTCAGCCGTCGCGAGACGGCGGGGGCG
ATCCGCCGCCGCCGCCGCCGCCGCATGCCAACGGCGGGGGGGGGGGGGGG
GCGGGGGCGGCGGGGGGGCCCCCCCGGGGTCCCCCCCCTCCGTCGGCTCC
GGGAGTACCCTATGGTATGTACAGTGGTGGCGGCAGCAGAGGCCGCCCCC
CCATGAACATGGGCATGCCCCCGCCGCCTCCAAATGTGAACATGGGTCGC
CCGCCGCCGCTGCCGCCGGCACCCCAGCCACCCACCCCTTCTTCTGGTGC
GGAGCCCCCCCCTGCAGCAGGGGCAGGAGCGGGGACGGGCGCGGCGGCTC
CGCCGCCGCCACCCCCGCAGCGTCAGCCGTCGCGAGACGGCGGGGGCGAT
CCGCCGCCGCCGCCGCCGCCGCATGCCAACGGCGGGGGGGGGGGGGGGGC
GGGGGCGGCGGGGGGGCCCCCCCGGGGTCCCCCCCCTCCGTCGGCT
back to top