mRNA_H-paniculata_contig25237.6876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25237.6876.1
Unique NamemRNA_H-paniculata_contig25237.6876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25237.6876.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.750e-14
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 3 
Query:   87 LAGALTHASVGLHIEDHPFLLQHKGIRAGCTSQNAVNHLRYNADMVMLAHNDPGDGAGFTCNKRVMVDDLNGNSSGPVRTALSLMNDIPVERAKTDIPPRCCLFLVNR 410
            L  A+  A VGL +EDHP +L +     G     A NHL+ + DMV+L HN+   GA FTCNKRV VDD  G  S     ++ LM D+  E A TDI  R   FL+NR
Sbjct:  409 LQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGAATDIVMRPLHFLINR 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25237.6876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE2.750e-1445.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25237contigH-paniculata_contig25237:753..2101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25237.6876.1prot_H-paniculata_contig25237.6876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25237 1907..2101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.0235953-UTR-H-paniculata_contig25237:752..8451622929744.0235953-UTR-H-paniculata_contig25237:752..845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 753..845 +
1691480992.292575-UTR-H-paniculata_contig25237:752..8451691480992.292575-UTR-H-paniculata_contig25237:752..845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 753..845 +
1622929744.0478172-UTR-H-paniculata_contig25237:1781..19061622929744.0478172-UTR-H-paniculata_contig25237:1781..1906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 1782..1906 +
1691480992.3024771-UTR-H-paniculata_contig25237:1781..19061691480992.3024771-UTR-H-paniculata_contig25237:1781..1906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25237 1782..1906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.0682883-CDS-H-paniculata_contig25237:1906..21011622929744.0682883-CDS-H-paniculata_contig25237:1906..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 1907..2101 +
1691480992.3117337-CDS-H-paniculata_contig25237:1906..21011691480992.3117337-CDS-H-paniculata_contig25237:1906..2101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25237 1907..2101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25237.6876.1

>prot_H-paniculata_contig25237.6876.1 ID=prot_H-paniculata_contig25237.6876.1|Name=mRNA_H-paniculata_contig25237.6876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MVMLAHNDPGDGAGFTCNKRVMVDDLNGNSSGPVRTALSLMNDIPVERAK
TDIPPRCCLFLVNR*
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mRNA from alignment at H-paniculata_contig25237:753..2101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25237.6876.1 ID=mRNA_H-paniculata_contig25237.6876.1|Name=mRNA_H-paniculata_contig25237.6876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1349bp|location=Sequence derived from alignment at H-paniculata_contig25237:753..2101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAAAGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTCTTGCTC
TTGCTGGTGCCAGCAACTCTTCTGCGTTGGTAAACGCTTGCAGGTACAGT
TTGGGGACGAATAAATGTCGTTGTGTTGCTTTCTATGGATGGTAGACTTT
GTTGTCATCGTCAGGTAGGTAGTCAGTCTGCCTCTGTTGCTTGCATGTTT
TAGTTGTTAGTCTTCCTCATATCAACTTGCATTACACCTGGCGTCAAAGT
ACAGGAGCTCCATTACATGTAGACTACATGAGACTGCTTCATGTCTTCTA
CATGAATCACTGCATATTTACTCACAACAGTGTGTCCTCAATGGATTTCG
CTTCACGAGAATGATGATTGGCGTGCACGATCCCTAAACATCTACTACGT
ACCCCTATTCGTTGCCGCTACGAAGGACCGAGAACATTGTTATCCATGAT
GGGGTGCCTCTTGCAGTTGGGTCGGCGGCCATGACAGATGGGAGTCTGTC
CACCAAGTGTGCGGCCAAATTGGTGGTTGTCCATTGCAGGAGACAAGACC
CTCCTCAACCCTTCTACATCAACCGACGCCCGACTGAACAAGCTATTCTA
ATCCGTGAAAGACAGTCTGCACCCCCGTGGGACTGTTGCAATCATGGTAC
CTCACCCTTGGCATCTGCACGGTGGACGCATCCACAGTGAATATTTTGTC
TTTGCTGTTTGTGCAACTTCATAAAAAATACGCTATTGCTGTAACATGGA
AGCCCATCGACCACTTCAGCCCACTATACCCAATGGTTTATGGGAGGAAA
AAGTAGCGTGTACACGGCATAACAGAGTGTACAACATGATTGCATCAAGG
TGTAATGTGAACGTGCGATTGGGGTATCACTGGATGTCCATTCTACGTTT
TTTCACATGTTGCACGATAAACTCCGCCTGTTGAGGCATATGAACGACCA
CGGAGGTATTGGAGCACACACATATCGGGTGTATTCCAAACATCAACGCA
TTCCGTCGACTTTCTTACTTTGTTTGCAGGTGCTCTGACCCATGCATCGG
TAGGATTGCACATTGAGGATCACCCATTTCTCCTCCAGCACAAGGGTATC
AGGGCCGGGTGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATGC
AGACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCA
CGTGCAACAAGCGTGTAATGGTGGACGATCTCAACGGCAACAGCAGCGGT
CCCGTTAGAACAGCCCTCTCATTGATGAACGACATACCTGTGGAGAGGGC
CAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25237:753..2101+

>mRNA_H-paniculata_contig25237.6876.1 ID=mRNA_H-paniculata_contig25237.6876.1|Name=mRNA_H-paniculata_contig25237.6876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig25237:753..2101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCACGTG
CAACAAGCGTGTAATGGTGGACGATCTCAACGGCAACAGCAGCGGTCCCG
TTAGAACAGCCCTCTCATTGATGAACGACATACCTGTGGAGAGGGCCAAG
ACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTGAATGGT
GATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCACGTGCAACA
AGCGTGTAATGGTGGACGATCTCAACGGCAACAGCAGCGGTCCCGTTAGA
ACAGCCCTCTCATTGATGAACGACATACCTGTGGAGAGGGCCAAGACGGA
TATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTGA
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