mRNA_H-paniculata_contig25208.6861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25208.6861.1
Unique NamemRNA_H-paniculata_contig25208.6861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25208.6861.1 vs. uniprot
Match: D7FWG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.590e-49
Identity = 100/221 (45.25%), Postives = 110/221 (49.77%), Query Frame = 1 
Query:    1 WHAGYERCGQVREAFRIPASSMLVPPPSLQQPWPCDRLRFAWASLLRLLQLVCHRALTLTLGRP-------------------------------------------------------------------------------SCYA--------------DEDNGDDFSVSYALHYPNEFADPALEKEDLTVGEHVDPSLFVAEPCCGVEGLEIQDRATG 384
            WH GYE+CG VRE FR PAS+   PP S +QPWPC RL  AW ++LRLLQ VCHRALTLTLGRP                                                                               +C A              D+D+ DDFSVSYAL YPNEFADPALE+EDLTVGEHVDPSLFVAEPCCGVEGLEI DRA+G
Sbjct:   54 WHTGYEKCGIVREVFRAPASAF--PPSSQRQPWPCPRLHRAWLAMLRLLQRVCHRALTLTLGRPVLGAPPAKAKKSRSTNRQGGASLKAVDGLLCERCPVCGSSLREEQEPEKGNAAAAVRGEKGGGSSTGGMDGGACHRQRFACSAIQDETGDGCGRDSCDDDSHDDFSVSYALRYPNEFADPALEQEDLTVGEHVDPSLFVAEPCCGVEGLEICDRASG 272
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BLAST of mRNA_H-paniculata_contig25208.6861.1 vs. uniprot
Match: A0A836CDG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.170e-32
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:    1 WHAGYERCGQVREAFRIPASSMLVPPPSLQQPWPCDRLRFAWASLLRLLQLVCHRALTLTLGRPSCYADEDNGDDFSVSYALHYPNEFADPALEKEDLTVGEHVDPSLFVAEPCCGVEGLEIQD 372
            W  G+E+CG++R+AFRI A        + +Q WP D LR AW  LLR+ + +C RAL+L LG P    +     DFSV YAL YPN   D     E+L V EHVDPSLFV EPCCGV GLE+ D
Sbjct:  133 WQTGFEKCGEMRQAFRIHAGH------ADRQSWPDDALRAAWLRLLRMCERICDRALSLALGYPVTPPENKQKHDFSVCYALCYPN---DATKYSEELNVTEHVDPSLFVVEPCCGVAGLEVLD 247
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BLAST of mRNA_H-paniculata_contig25208.6861.1 vs. uniprot
Match: A0A7S4DAX6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAX6_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 5.500e-22
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:    1 WHAGYERCGQVREAFRIPASSMLVPPPSLQQPWPCDR--LRFAWASLLRLLQLVCHRALTLTLGRPSC--YADEDNGDDFSVSYALHYPNEFADPALEKEDLTVGEHVDPSLFVAEPCCGVEGLEIQDRAT 381
            W  GYER   +REA R  A++         QPWP     LR AW    + L  +  R L LTLG      Y + +  D+FSV YALHYPN+ + P    ++  V EH+DPSLFV EPC  V+GLE+ D+AT
Sbjct:  101 WATGYERM-PMREAVRARAAAPHA------QPWPASAGGLREAWEKTTKNLMQIADRCLLLTLGAEQALTYKEVEEDDNFSVCYALHYPNDESYP----DEFAVTEHIDPSLFVIEPCSNVDGLEVLDQAT 220
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BLAST of mRNA_H-paniculata_contig25208.6861.1 vs. uniprot
Match: W4FWQ0_9STRA (2OG-FeII_Oxy domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWQ0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.070e-16
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:    1 WHAGYERCGQVREAFRIPASSMLVPPPSLQQPWPCDRLRFAWASLLRLLQLVCHRALTLTLG--RPSCYADEDNGDDFSVSYALHYPNEFADPALEKEDLTVGEHVDPSLFVAEPCCGVEGLEIQD 372
            W+AGYE    VRE FR     +       +  WP       + +LL++ Q +C ++L+LTLG    +    +  G+D SV Y LHYPN+      +  D  V EH+DPSL+V EP   V GL++ D
Sbjct:  120 WYAGYEST-HVRECFRAHTGDLS------RMQWPSADFEAKYLALLKVCQTICDKSLSLTLGYNADTARVHQAAGEDLSVCYGLHYPNQVG--TGQSNDENVYEHIDPSLYVIEPVTDVAGLDVFD 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25208.6861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWG5_ECTSI2.590e-4945.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDG4_9STRA3.170e-3250.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DAX6_HETAK5.500e-2243.51Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W4FWQ0_9STRA6.070e-1636.512OG-FeII_Oxy domain-containing protein n=8 Tax=Aph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25208contigH-paniculata_contig25208:1953..2858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue6.2e-40
Seed eggNOG ortholog2880.D7FWG5
Hectar predicted targeting categoryother localisation
EggNOG OGs29HEZ@1,2RQMK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.0418115-CDS-H-paniculata_contig25208:1952..21501622929742.0418115-CDS-H-paniculata_contig25208:1952..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25208 1953..2150 -
1691480991.3775277-CDS-H-paniculata_contig25208:1952..21501691480991.3775277-CDS-H-paniculata_contig25208:1952..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25208 1953..2150 -
1622929742.0779266-CDS-H-paniculata_contig25208:2666..28581622929742.0779266-CDS-H-paniculata_contig25208:2666..2858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25208 2667..2858 -
1691480991.3967452-CDS-H-paniculata_contig25208:2666..28581691480991.3967452-CDS-H-paniculata_contig25208:2666..2858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25208 2667..2858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25208.6861.1prot_H-paniculata_contig25208.6861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25208 1953..2858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25208.6861.1

>prot_H-paniculata_contig25208.6861.1 ID=prot_H-paniculata_contig25208.6861.1|Name=mRNA_H-paniculata_contig25208.6861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
WHAGYERCGQVREAFRIPASSMLVPPPSLQQPWPCDRLRFAWASLLRLLQ
LVCHRALTLTLGRPSCYADEDNGDDFSVSYALHYPNEFADPALEKEDLTV
GEHVDPSLFVAEPCCGVEGLEIQDRATGR*
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mRNA from alignment at H-paniculata_contig25208:1953..2858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25208.6861.1 ID=mRNA_H-paniculata_contig25208.6861.1|Name=mRNA_H-paniculata_contig25208.6861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=906bp|location=Sequence derived from alignment at H-paniculata_contig25208:1953..2858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCACGCCGGGTACGAACGCTGCGGTCAAGTGCGCGAGGCGTTTCGCAT
CCCCGCCTCCTCCATGCTCGTGCCGCCGCCGTCGCTACAACAACCGTGGC
CATGCGATCGCTTGCGCTTCGCTTGGGCTTCGTTGCTGCGCCTCCTCCAG
CTCGTGTGCCACCGGGCGCTGACTCTTACCCTGGGACGACCTGTGCATGG
CGCTCCCTCAGCAAACAAAAAAATGAACGAAAACAGCCGGCGCCGCCCAT
TGCAATGCTCGGGGTCATCGGAGACACCAACCGACGACGGGAGGAAAATG
GCCGAGAGGCACATCGATAATGGCGGGTCAGTCTTGCGGCATAAGACGAC
CCGTGAAGTGGGCATGGAGGAAGAAGGGGGTGGGTGCTTGGCGAGGGCGA
AACAAAACATTGATTTAGAAAAGGAGCAGGAGCAGAGGCAGGAAGGTGCA
GGTAGCCGGTGCTTCGTACGCGACGGCGGCGGCAGCGGCGGTGGTGCTGG
TGCTGGTGGTGCTGGTGATGATCGATTGCCGGGCTTCGGAGCTGGCGATG
GTGTCGTCGGAGATTGTGGTGGTGGGGGAGCCGGACGACATGGTTTTAGA
AGTACCGGGCAAGATCGGGACGGCAATGCCAGCACTTCTCGGGGTTGCGG
TGTAGTAGACGACTACTTTGAAGGCGAAGAAAAGGAGGAGACAGCAACAA
GCGACGAGTCTTGTTATGCGGACGAGGACAATGGTGACGATTTCTCCGTG
AGTTACGCGCTTCACTACCCCAACGAGTTCGCCGATCCTGCTTTGGAAAA
GGAGGACTTGACCGTAGGGGAGCACGTAGATCCCAGTCTGTTCGTTGCGG
AGCCCTGCTGCGGTGTTGAGGGGTTGGAGATACAGGATCGGGCAACCGGC
AGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25208:1953..2858-

>mRNA_H-paniculata_contig25208.6861.1 ID=mRNA_H-paniculata_contig25208.6861.1|Name=mRNA_H-paniculata_contig25208.6861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig25208:1953..2858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCACGCCGGGTACGAACGCTGCGGTCAAGTGCGCGAGGCGTTTCGCAT
CCCCGCCTCCTCCATGCTCGTGCCGCCGCCGTCGCTACAACAACCGTGGC
CATGCGATCGCTTGCGCTTCGCTTGGGCTTCGTTGCTGCGCCTCCTCCAG
CTCGTGTGCCACCGGGCGCTGACTCTTACCCTGGGACGACCTTGGCACGC
CGGGTACGAACGCTGCGGTCAAGTGCGCGAGGCGTTTCGCATCCCCGCCT
CCTCCATGCTCGTGCCGCCGCCGTCGCTACAACAACCGTGGCCATGCGAT
CGCTTGCGCTTCGCTTGGGCTTCGTTGCTGCGCCTCCTCCAGCTCGTGTG
CCACCGGGCGCTGACTCTTACCCTGGGACGACCTTCTTGTTATGCGGACG
AGGACAATGGTGACGATTTCTCCGTGAGTTACGCGCTTCACTACCCCAAC
GAGTTCGCCGATCCTGCTTTGGAAAAGGAGGACTTGACCGTAGGGGAGCA
CGTAGATCCCAGTCTGTTCGTTGCGGAGCCCTGCTGCGGTGTTGAGGGGT
TGGAGATACAGGATCGGGCAACCGGCAGGTGATCTTGTTATGCGGACGAG
GACAATGGTGACGATTTCTCCGTGAGTTACGCGCTTCACTACCCCAACGA
GTTCGCCGATCCTGCTTTGGAAAAGGAGGACTTGACCGTAGGGGAGCACG
TAGATCCCAGTCTGTTCGTTGCGGAGCCCTGCTGCGGTGTTGAGGGGTTG
GAGATACAGGATCGGGCAACCGGCAGGTGA
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