mRNA_H-paniculata_contig252.6857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig252.6857.1
Unique NamemRNA_H-paniculata_contig252.6857.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig252.6857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig252contigH-paniculata_contig252:37192..37563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig252.6857.1prot_H-paniculata_contig252.6857.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig252 37251..37562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.6975455-UTR-H-paniculata_contig252:37191..372501622929741.6975455-UTR-H-paniculata_contig252:37191..37250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 37192..37250 +
1691480991.2124348-UTR-H-paniculata_contig252:37191..372501691480991.2124348-UTR-H-paniculata_contig252:37191..37250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 37192..37250 +
1622929741.7240791-UTR-H-paniculata_contig252:37562..375631622929741.7240791-UTR-H-paniculata_contig252:37562..37563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 37563..37563 +
1691480991.2370772-UTR-H-paniculata_contig252:37562..375631691480991.2370772-UTR-H-paniculata_contig252:37562..37563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 37563..37563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.7111137-CDS-H-paniculata_contig252:37250..375621622929741.7111137-CDS-H-paniculata_contig252:37250..37562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 37251..37562 +
1691480991.226971-CDS-H-paniculata_contig252:37250..375621691480991.226971-CDS-H-paniculata_contig252:37250..37562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 37251..37562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig252.6857.1

>prot_H-paniculata_contig252.6857.1 ID=prot_H-paniculata_contig252.6857.1|Name=mRNA_H-paniculata_contig252.6857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MGYYSITPVRPSAERVDTVYRPREVSVLEIVHVSKTFAIRCGIPKYCGIL
CSCTSVSCNFTNLVYYCRREWPHHFGEGNDYKITGKTKYLLNFDERHELG
LQL*
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mRNA from alignment at H-paniculata_contig252:37192..37563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig252.6857.1 ID=mRNA_H-paniculata_contig252.6857.1|Name=mRNA_H-paniculata_contig252.6857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig252:37192..37563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGCACCGCCTTTATTTCGGGAGTTATAACCTTAGTATTTGCGTCAAC
TTTCCGGTAATGGGATACTATTCAATAACACCTGTGCGCCCGTCCGCAGA
GAGGGTGGACACGGTCTATCGACCGCGTGAGGTCTCCGTTCTCGAGATCG
TACACGTTTCAAAAACGTTCGCAATTCGGTGCGGTATCCCCAAGTATTGC
GGTATACTGTGCTCCTGTACCAGTGTATCATGCAACTTCACCAACCTGGT
GTACTACTGCCGCAGGGAATGGCCACACCATTTCGGCGAAGGCAACGATT
ACAAAATTACTGGGAAAACAAAATACCTACTAAATTTTGACGAACGGCAT
GAATTGGGCTTGCAGTTGTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig252:37192..37563+

>mRNA_H-paniculata_contig252.6857.1 ID=mRNA_H-paniculata_contig252.6857.1|Name=mRNA_H-paniculata_contig252.6857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig252:37192..37563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATACTATTCAATAACACCTGTGCGCCCGTCCGCAGAGAGGGTGGA
CACGGTCTATCGACCGCGTGAGGTCTCCGTTCTCGAGATCGTACACGTTT
CAAAAACGTTCGCAATTCGGTGCGGTATCCCCAAGTATTGCGGTATACTG
TGCTCCTGTACCAGTGTATCATGCAACTTCACCAACCTGGTGTACTACTG
CCGCAGGGAATGGCCACACCATTTCGGCGAAGGCAACGATTACAAAATTA
CTGGGAAAACAAAATACCTACTAAATTTTGACGAACGGCATGAATTGGGC
TTGCAGTTGTAAATGGGATACTATTCAATAACACCTGTGCGCCCGTCCGC
AGAGAGGGTGGACACGGTCTATCGACCGCGTGAGGTCTCCGTTCTCGAGA
TCGTACACGTTTCAAAAACGTTCGCAATTCGGTGCGGTATCCCCAAGTAT
TGCGGTATACTGTGCTCCTGTACCAGTGTATCATGCAACTTCACCAACCT
GGTGTACTACTGCCGCAGGGAATGGCCACACCATTTCGGCGAAGGCAACG
ATTACAAAATTACTGGGAAAACAAAATACCTACTAAATTTTGACGAACGG
CATGAATTGGGCTTGCAGTTGTAA
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