mRNA_H-paniculata_contig25.6803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25.6803.1
Unique NamemRNA_H-paniculata_contig25.6803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25.6803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25contigH-paniculata_contig25:28471..29079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.3231306-CDS-H-paniculata_contig25:28472..285571622929733.3231306-CDS-H-paniculata_contig25:28472..28557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 28473..28557 -
1691480987.4936476-CDS-H-paniculata_contig25:28472..285571691480987.4936476-CDS-H-paniculata_contig25:28472..28557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 28473..28557 -
1622929733.3389502-CDS-H-paniculata_contig25:28972..290791622929733.3389502-CDS-H-paniculata_contig25:28972..29079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 28973..29079 -
1691480987.5046644-CDS-H-paniculata_contig25:28972..290791691480987.5046644-CDS-H-paniculata_contig25:28972..29079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 28973..29079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25.6803.1prot_H-paniculata_contig25.6803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25 28473..29079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25.6803.1

>prot_H-paniculata_contig25.6803.1 ID=prot_H-paniculata_contig25.6803.1|Name=mRNA_H-paniculata_contig25.6803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
KGLITPYESSFRRIAWDDDKKSTSVVAFARHAVDVRRRQRPPSPPLSSEP
EPEPETRDRLRSED
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mRNA from alignment at H-paniculata_contig25:28471..29079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25.6803.1 ID=mRNA_H-paniculata_contig25.6803.1|Name=mRNA_H-paniculata_contig25.6803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=609bp|location=Sequence derived from alignment at H-paniculata_contig25:28471..29079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGCTTATAACTCCATACGAGAGCAGTTTTCGACGGATAGCGTGGGA
CGACGACAAAAAGAGTACCTCTGTTGTAGCGTTTGCACGCCACGCCGTTG
ATGTCAGGTCAGCACTGTGCAGTAGGTCGGGAGAAAACCACGAGCAAGCT
ACATGTACTTCCTTTCGAAATATTATAGTGCAGTATGTATGCTGTCCCCA
TTGCGGCACATCATTGTGAAGTTTACTCAATCGTTCATTCGCCTTTTGCT
ATGGCAACATTCTTCGAGAACGTTCAACTTCTGATCACCCCTTTCTCCCG
AGGGGGGTGTCTCAACGAAGCAACCGATCAGAACGATTTCCCACGCTCGA
TCCTGTGTACTCGCCGTCATTGCCCCGGACTCTCTCAACCGCTGCTCGAT
ACGTGGTGATAGGACATCCTTTCGTATTTGGTATGTCTTCAACACGTATC
CCTTATGAATCAATACGGTATTATTGGAGTATTTCAATTTCGCCGCACCC
GGAACATCGATGGTCACCTCAGGCGGCGTCAAAGGCCCCCTTCGCCACCC
CTCTCGTCGGAACCGGAGCCAGAACCCGAGACACGAGATCGCCTTAGATC
TGAAGACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig25:28471..29079-

>mRNA_H-paniculata_contig25.6803.1 ID=mRNA_H-paniculata_contig25.6803.1|Name=mRNA_H-paniculata_contig25.6803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig25:28471..29079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGCTTATAACTCCATACGAGAGCAGTTTTCGACGGATAGCGTGGGA
CGACGACAAAAAGAGTACCTCTGTTGTAGCGTTTGCACGCCACGCCGTTG
ATGTCAGAAGGGGCTTATAACTCCATACGAGAGCAGTTTTCGACGGATAG
CGTGGGACGACGACAAAAAGAGTACCTCTGTTGTAGCGTTTGCACGCCAC
GCCGTTGATGTCAGGCGGCGTCAAAGGCCCCCTTCGCCACCCCTCTCGTC
GGAACCGGAGCCAGAACCCGAGACACGAGATCGCCTTAGATCTGAAGACG
CGGCGTCAAAGGCCCCCTTCGCCACCCCTCTCGTCGGAACCGGAGCCAGA
ACCCGAGACACGAGATCGCCTTAGATCTGAAGAC
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