mRNA_H-paniculata_contig2496.6789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2496.6789.1
Unique NamemRNA_H-paniculata_contig2496.6789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2496.6789.1 vs. uniprot
Match: A0A0C3DCW2_9AGAM (HSF_DOMAIN domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3DCW2_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-5
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:   46 HIEKSSKGGDVCEGFQFKLYALLEEGENDLIRWHSHHEGFQVPDRDRFVREVAAPQFGCLTWGSFAELLSNYGFTTTPSARLLQEAWPVSSSSDSNFEEVFIHPSFRRGRVQSL 387
            H+ K ++   +   F  KLY ++ +  +DLI+W    + F V D++RF  EV    F    + SF   L+ YGF   P    LQ+   + S S++ F   F HP+F RG+   L
Sbjct:   23 HLNKPARS--LVPAFLQKLYEMVNDPADDLIKWSDTGDSFFVLDQERFANEVLGRWFKHKNFSSFVRQLNMYGFHKIPH---LQQG-VLRSESETEFWN-FEHPNFIRGQPDML 129
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BLAST of mRNA_H-paniculata_contig2496.6789.1 vs. uniprot
Match: A0A0F7SC58_9BASI (HSF_DOMAIN domain-containing protein n=1 Tax=Sporisorium scitamineum TaxID=49012 RepID=A0A0F7SC58_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 6.700e-5
Identity = 38/112 (33.93%), Postives = 52/112 (46.43%), Query Frame = 1 
Query:   67 GGDVCEGFQFKLYALLEEGE-NDLIRWHSHHEGFQVPDRDRFVREVAAPQFGCLTWGSFAELLSNYGFTTTPSARLLQEAWPVSSSSDSNFEEVFIHPSFRRGRVQSLIDVR 399
            GG     F  KLY++LE+   +DLI W S    F V +   F R V    F    W SF   L+ YGF        +  ++  + S +    E F HPSFRRG +  L D++
Sbjct:  330 GGKQQPSFVSKLYSMLEDPSISDLISWGSSGTVFSVANPAEFSRLVLPNWFKHSNWQSFVRQLNMYGF------HKVNHSYQGNPSDEVQVWE-FRHPSFRRGEIALLNDIK 434
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BLAST of mRNA_H-paniculata_contig2496.6789.1 vs. uniprot
Match: A0A5C3E7Y7_9BASI (HSF_DOMAIN domain-containing protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E7Y7_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 6.760e-5
Identity = 37/112 (33.04%), Postives = 52/112 (46.43%), Query Frame = 1 
Query:   67 GGDVCEGFQFKLYALLEEGE-NDLIRWHSHHEGFQVPDRDRFVREVAAPQFGCLTWGSFAELLSNYGFTTTPSARLLQEAWPVSSSSDSNFEEVFIHPSFRRGRVQSLIDVR 399
            GG     F  KLY++LE+   +DLI W S    F V +   F R V    F    W SF   L+ YGF        +  ++  + + +    E F HPSFRRG +  L D++
Sbjct:  325 GGKQQPSFVSKLYSMLEDPSISDLISWGSSGTVFSVANPAEFSRHVLPNWFKHSNWQSFVRQLNMYGF------HKVNHSYQGNPTDEVQVWE-FRHPSFRRGEIALLNDIK 429
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BLAST of mRNA_H-paniculata_contig2496.6789.1 vs. uniprot
Match: A0A8H7PMK2_9FUNG (HSF_DOMAIN domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PMK2_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 8.110e-5
Identity = 42/139 (30.22%), Postives = 59/139 (42.45%), Query Frame = 1 
Query:   88 FQFKLYALLEEGE-NDLIRWHSHHEGFQVPDRDRFVREVAAPQFGCLTWGSFAELLSNYGFTTTPSARLLQEAWPVSSSSDSNFEEVFIHPSFRRGRVQSLIDVRLVGSLAASPALAKTKKRSRLQNIADGAGQTSSVT 501
            F  KLY +LE+ E  DLI W    + F V +  +F + V    F    W SF   L+ YGF        + +    S+ ++ +    F HPSFRRG +Q L ++             K K  +R       AG  SS T
Sbjct:   63 FVNKLYRMLEDHEMQDLISWSQSGDLFSVSNPTQFSKVVLPQYFKHNNWQSFVRQLNMYGF------HKVNDMIHHSNITNESQAWEFRHPSFRRGGIQELQNI-------------KRKSANRADRYPRNAGSNSSTT 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2496.6789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0C3DCW2_9AGAM1.510e-532.46HSF_DOMAIN domain-containing protein n=1 Tax=Scler... [more]
A0A0F7SC58_9BASI6.700e-533.93HSF_DOMAIN domain-containing protein n=1 Tax=Spori... [more]
A0A5C3E7Y7_9BASI6.760e-533.04HSF_DOMAIN domain-containing protein n=1 Tax=Ustil... [more]
A0A8H7PMK2_9FUNG8.110e-530.22HSF_DOMAIN domain-containing protein n=1 Tax=Umbel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2496contigH-paniculata_contig2496:15639..18374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.1806004-CDS-H-paniculata_contig2496:15638..158061622929732.1806004-CDS-H-paniculata_contig2496:15638..15806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 15639..15806 +
1691480987.1126943-CDS-H-paniculata_contig2496:15638..158061691480987.1126943-CDS-H-paniculata_contig2496:15638..15806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 15639..15806 +
1622929732.200353-CDS-H-paniculata_contig2496:17939..183741622929732.200353-CDS-H-paniculata_contig2496:17939..18374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 17940..18374 +
1691480987.125787-CDS-H-paniculata_contig2496:17939..183741691480987.125787-CDS-H-paniculata_contig2496:17939..18374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2496 17940..18374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2496.6789.1prot_H-paniculata_contig2496.6789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2496 15639..18374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2496.6789.1

>prot_H-paniculata_contig2496.6789.1 ID=prot_H-paniculata_contig2496.6789.1|Name=mRNA_H-paniculata_contig2496.6789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
YCRLANRPIKYAIMKHIEKSSKGGDVCEGFQFKLYALLEEGENDLIRWHS
HHEGFQVPDRDRFVREVAAPQFGCLTWGSFAELLSNYGFTTTPSARLLQE
AWPVSSSSDSNFEEVFIHPSFRRGRVQSLIDVRLVGSLAASPALAKTKKR
SRLQNIADGAGQTSSVTPGRKKRRQVQKVLHPVDDRRELMTAAGVVPPGC
V
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mRNA from alignment at H-paniculata_contig2496:15639..18374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2496.6789.1 ID=mRNA_H-paniculata_contig2496.6789.1|Name=mRNA_H-paniculata_contig2496.6789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2736bp|location=Sequence derived from alignment at H-paniculata_contig2496:15639..18374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTGCAGGTTAGCAAATCGGCCGATCAAGTACGCCATCATGAAACACAT
AGAAAAGTCTTCAAAGGGTGGGGATGTGTGTGAGGGATTCCAGTTCAAGC
TCTACGCGCTTCTTGAGGAGGGAGAGAATGACCTGATTAGATGGCACTCC
CACCACGAAGGCTTCCAGGTAAGTTTCGAAAGTCACCTTCGGTACAGGAC
AAGTACAGTACAGTAGAGTACAGTACAATACAGTACAATACAGTACAATA
CAGTACAATACAGTACAATACAGTACAATACAGTACAATACAGTAGAATA
CAGTAGACCTACACAAGTTTTTGTTGTCGCAACCTGACTGCAACGTATGT
ATGTGGCTCCCAGTCTAGTAGACTCTCACAATTGAATCCAGTTACTCTAT
TGCTACGTGTTGCTAACAGTACTAGTGCGTTCTCACGGTAGAATCCGAAC
CTCGTTGCTATTTGCCTCTCTCGATACTGTCTGTATGTATACTGTTGATG
GTACTGTACTTCTTACGCCGTCGATTATGATCGGATGATTTGTTAGATGG
CGGTCGTGGGTAGACTTGTGATAATATGGCTTTAAAAAATCGTCCAATCC
GCGCGGCGGGGCAAGGGTCGAAACGCAAAAGGCTGTTGTGTAATGGGGCA
GGTACAACACAGTGAGTAGAGCCATGTTATGCACATAATGCGTCCACCGT
GCCTATTTGACCACCAATATTGGGAAAATACTTCATTTACGAGAACAGAC
ACTGGTTGCATCAGTTGCGGTCGTTCTTTTTCGACAGAGGCGTGTGTCCA
CCGCAGAACGTGGTGTGTAGTGAGTATATCAGCACCCAAATACTGGCCAC
TTCACATACCACACGAGTTTTGTAGGGCACCGATGTCTGTTAATGGAGCA
ATAACATGGCACACACTGCACTGTTGCAATTCCCATTTGGACACCTTAGC
CGCGCCGACACCATAACACGCGAAGTATCGTGGGATCCCGCTAGAGTTCG
GCGCGATGACAGGTGAGTTTGACGGCACCCATACGGTACCGAGCCCATCA
ATAATGTGGTACCGTACAAGATCCGGCCCTACACCCACCTTCATCATGAA
TATGGTTAGCAAATCGGTATAAAGAACGGGTAGCCTTGGTTTTACGCAAT
TCATTTTAGCAACAGTATACTACCTCATTTATTTTTCAGACCACCGAGAT
ACGACGTATATGTCTGGGATTGCGCATTAGTTGTTTCGCTTTGGCGTGTG
TATCGCTTGATCTCTCCGTCGGTGGTCGCTAACTTGCCTCGGGTTGCATC
CGGTATGTCATGCATCAACACCACCGTATATTGTAGAGGCCCGGAAAAAA
ATCAACGATAAAGAGAGAGACGGGCATGTACCACATGCACGGTGAAGTAC
CCAAACCAGGGGCGCCCCTGGCTATAATAAGTACACTATACTTGCGCCAA
CTCATGGTTCTTTTTTTTTTTATATGTTGGCAAGTCGTGGTCCACACGTC
CCATTGGCGATAAGAGTAGTCACCGTATGGCACACCATGTAGTGTATCTG
CCGGTTTTTTGCTCCACACGAAACATGGATAAAGGTGTGCAGTAAAGCTC
AGGGCGTTTCACTGCTCAGTGTGCTGCGGTCGAAAGGGACCATAAGCGCC
CGTGTAGTGTGGTAACCGGACTATTGTTGGATGGTCCATTTACAGTGCGG
CGAACGCATTGTGGTTGGTTGGAGCTGTGACAAACGATTTTGACCGCACA
ATATCAAGACCCCGCAACATGTAAGACAGGACTATAGTGTGACCCACTGC
ACTGAGGTACATTGTACGCAGAATTAATACATCACCCCCCGAACGAATAC
GAATACATGAAAATGGTTTTCACAACAAACTGAAAGTATTCGATTGCAAG
TCAGAATGAGCGGACATATAAGTGAAGTATCCAACCCTGTTCATTCGATT
TACGAGTATTATTTAGCAGTCTTGAATGGTCTGGGTCACACAAAATACAC
GAGCTCATTCCAAACCTCAGGAAAATACTTGTTAGTTGTTTGTGAAAACC
ATTTGCAAGTATTCGTATTTGTCCGGAGGGTGAAAAATATCGAAAGATAC
TCGCCGGAGAAAAGTTGAACCACATATTCGACGGCGGGTCTCATTTTAGC
TTACCAGTCATGTATAACACTGTTATCCTCTTGGAAGTACAGCGTATCGT
TCGTGTTTGTGCGCAGAGAATTTTAGACTTTATCGTTGACAACTTGACTG
CTGACCACTTCTCTTCTTATTCCCGTCACGATCACGTTGGGGGTGGCGCA
GGTACCGGATCGCGACCGCTTCGTACGCGAGGTAGCCGCTCCTCAATTTG
GATGTCTCACCTGGGGCTCGTTCGCGGAGCTGCTGTCGAACTACGGCTTC
ACGACCACGCCATCAGCGAGGCTCTTGCAAGAGGCATGGCCGGTCAGCAG
CAGCAGTGACAGCAATTTCGAGGAGGTCTTCATTCACCCATCGTTCCGAC
GAGGCCGCGTGCAGTCTCTGATCGACGTGCGACTCGTCGGGTCTCTCGCT
GCTTCACCCGCTTTGGCGAAGACTAAAAAGCGGTCACGACTGCAGAATAT
CGCTGATGGTGCTGGACAGACCTCTAGCGTTACCCCGGGCAGGAAGAAGC
GGCGACAAGTTCAGAAAGTTCTGCATCCGGTGGACGACAGAAGGGAGTTG
ATGACTGCCGCGGGGGTCGTGCCACCTGGTTGTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2496:15639..18374+

>mRNA_H-paniculata_contig2496.6789.1 ID=mRNA_H-paniculata_contig2496.6789.1|Name=mRNA_H-paniculata_contig2496.6789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig2496:15639..18374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTGCAGGTTAGCAAATCGGCCGATCAAGTACGCCATCATGAAACACAT
AGAAAAGTCTTCAAAGGGTGGGGATGTGTGTGAGGGATTCCAGTTCAAGC
TCTACGCGCTTCTTGAGGAGGGAGAGAATGACCTGATTAGATGGCACTCC
CACCACGAAGGCTTCCAGTACTGCAGGTTAGCAAATCGGCCGATCAAGTA
CGCCATCATGAAACACATAGAAAAGTCTTCAAAGGGTGGGGATGTGTGTG
AGGGATTCCAGTTCAAGCTCTACGCGCTTCTTGAGGAGGGAGAGAATGAC
CTGATTAGATGGCACTCCCACCACGAAGGCTTCCAGGTACCGGATCGCGA
CCGCTTCGTACGCGAGGTAGCCGCTCCTCAATTTGGATGTCTCACCTGGG
GCTCGTTCGCGGAGCTGCTGTCGAACTACGGCTTCACGACCACGCCATCA
GCGAGGCTCTTGCAAGAGGCATGGCCGGTCAGCAGCAGCAGTGACAGCAA
TTTCGAGGAGGTCTTCATTCACCCATCGTTCCGACGAGGCCGCGTGCAGT
CTCTGATCGACGTGCGACTCGTCGGGTCTCTCGCTGCTTCACCCGCTTTG
GCGAAGACTAAAAAGCGGTCACGACTGCAGAATATCGCTGATGGTGCTGG
ACAGACCTCTAGCGTTACCCCGGGCAGGAAGAAGCGGCGACAAGTTCAGA
AAGTTCTGCATCCGGTGGACGACAGAAGGGAGTTGATGACTGCCGCGGGG
GTCGTGCCACCTGGTTGTGTCGTACCGGATCGCGACCGCTTCGTACGCGA
GGTAGCCGCTCCTCAATTTGGATGTCTCACCTGGGGCTCGTTCGCGGAGC
TGCTGTCGAACTACGGCTTCACGACCACGCCATCAGCGAGGCTCTTGCAA
GAGGCATGGCCGGTCAGCAGCAGCAGTGACAGCAATTTCGAGGAGGTCTT
CATTCACCCATCGTTCCGACGAGGCCGCGTGCAGTCTCTGATCGACGTGC
GACTCGTCGGGTCTCTCGCTGCTTCACCCGCTTTGGCGAAGACTAAAAAG
CGGTCACGACTGCAGAATATCGCTGATGGTGCTGGACAGACCTCTAGCGT
TACCCCGGGCAGGAAGAAGCGGCGACAAGTTCAGAAAGTTCTGCATCCGG
TGGACGACAGAAGGGAGTTGATGACTGCCGCGGGGGTCGTGCCACCTGGT
TGTGTC
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