mRNA_H-paniculata_contig24951.6785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24951.6785.1
Unique NamemRNA_H-paniculata_contig24951.6785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24951.6785.1 vs. uniprot
Match: D7FQA1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA1_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 2.160e-78
Identity = 115/148 (77.70%), Postives = 132/148 (89.19%), Query Frame = 1 
Query:    1 PAVGRAVLDLDAQDFGNFLVHPLMGTAELPSGDFEFRREGTALGVDIGRATFTGVWHGQSVVMEACQPERFGKIYTRVAQRGKLTNLGMKTLSEEMTHYFNTVELDLDGTAVRFEDMHHGYNRQGEASLRVTVGVVVHRIPNPENMKF 444
            PA G A+++LDAQDFGNFLVHPL+ TA+LPSG F+FRREGTAL V+ GRATFTG W GQ VVMEACQP+RFGKI+ RVAQRG+LT+LG++TLSEEMTH+FNTV LDLDGTAVRF DM+HGYN +GE SLRVTV VVVHR+P PENMKF
Sbjct:  166 PAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALDVERGRATFTGSWQGQPVVMEACQPDRFGKIHARVAQRGRLTDLGIRTLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMKF 313
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BLAST of mRNA_H-paniculata_contig24951.6785.1 vs. uniprot
Match: A0A1Z5K331_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K331_FISSO)

HSP 1 Score: 73.2 bits (178), Expect = 7.640e-13
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:    1 PAVGRAVLDLDAQDFGNFLVHPLMGTAELPSGDFEFRREGTALGVDIGRATFTGVWHGQS---VVMEACQPERFGKIYTRVAQRGKLTNLGMKTLSEEMTHYFNTVELDLDGTAVRFEDMHHGYNRQGEA-SLRVTVGVVVHRIPN 426
            PA+G+A++ L+A DF NF+ HPLM T     GD +F REGT++   +G  TF  +   Q+   V+  A   +R      R+  +G   +  ++ +S+ ++ +FN +  +LDGT + F DM      +GEA S+ + + + VH+ P+
Sbjct:  104 PALGKAMVALNAHDFSNFITHPLMKTL----GDLQFVREGTSINATLGTVTFHVLKASQTFRCVLQRADNEQR----RARIEVQGDDIDTALE-ISQNLSDFFNDLVFELDGTFLSFRDMM--VTGKGEAPSVMLALSIKVHKFPS 238
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BLAST of mRNA_H-paniculata_contig24951.6785.1 vs. uniprot
Match: D7FWQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWQ0_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-10
Identity = 39/149 (26.17%), Postives = 71/149 (47.65%), Query Frame = 1 
Query:    1 PAVGRAVLDLDAQDFGNFLVHPLMGTAELPSGDFEFRREGTALGVDIGRATFTGVWHGQSVVMEACQPERFGKIYTRVAQR-------GKLTNLGMKTLSEEMTHYFNTVELDLDGTAVRFEDMHHGYNRQGEASLRVTVGVVVHRIPN 426
            P  G A++   A+DFGNFL HPL+    +    F F R+G  +        F GVW  + + +E  Q      + + V +          LT+     ++ +M+ +FN +E+DLDG  + F  +    +      +++ +G+VV ++P+
Sbjct:   76 PPSGNAIVVFSAEDFGNFLAHPLIRRTVVAGRSFVFDRQGVVVDPRKRTVAFGGVWGAEKLRIELSQAAARAPLVSEVVRSVDDGDHDSGLTD--DDAIASDMSEFFNNLEVDLDGPRLSFSSLSFEGSGIEGGRVKLALGIVVRKLPS 222
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BLAST of mRNA_H-paniculata_contig24951.6785.1 vs. uniprot
Match: A0A7S2UAU9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAU9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.450e-10
Identity = 42/150 (28.00%), Postives = 67/150 (44.67%), Query Frame = 1 
Query:    1 PAVGRAVLDLDAQDFGNFLVHPLMGTAELPSG---DFEFRREGTALGVDIGRATFTGVWHGQS----VVMEACQPERFGKIYTRVAQRGKLTNLGMKTLSEEMTHYFNTVELDLDGTAVRFEDMHHGYNRQGEASLRVTVGVVVHRIPNP 429
            PA G A++ L A+DFGNF+ HPLM    +P       +F +EG  +  + G   F G  HG        +        G+            +     LS  +T +FN +  +LDGT + F D+     + G  S+ + + +VV + P+P
Sbjct:  211 PAKGEAMIALTAEDFGNFITHPLMKAPAVPGSAEKGVQFCKEGVVVDPETGSVIFMGTTHGSGDTWRFTLSRGTSASGGEALVVAEHATTKNHAHAGELSNRLTDFFNFLVFELDGTFLSFRDL-MVTEKGGSPSVMIALSIVVKKFPSP 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24951.6785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQA1_ECTSI2.160e-7877.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5K331_FISSO7.640e-1332.88Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
D7FWQ0_ECTSI1.750e-1026.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UAU9_9STRA2.450e-1028.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24951contigH-paniculata_contig24951:1105..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog2880.D7FWQ0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E7A0@1,2SDWV@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.5547447-CDS-H-paniculata_contig24951:1104..13131622929731.5547447-CDS-H-paniculata_contig24951:1104..1313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24951 1105..1313 +
1691480986.8209448-CDS-H-paniculata_contig24951:1104..13131691480986.8209448-CDS-H-paniculata_contig24951:1104..1313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24951 1105..1313 +
1622929731.5938666-CDS-H-paniculata_contig24951:1794..20321622929731.5938666-CDS-H-paniculata_contig24951:1794..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24951 1795..2032 +
1691480986.8330684-CDS-H-paniculata_contig24951:1794..20321691480986.8330684-CDS-H-paniculata_contig24951:1794..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24951 1795..2032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24951.6785.1prot_H-paniculata_contig24951.6785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24951 1105..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24951.6785.1

>prot_H-paniculata_contig24951.6785.1 ID=prot_H-paniculata_contig24951.6785.1|Name=mRNA_H-paniculata_contig24951.6785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
PAVGRAVLDLDAQDFGNFLVHPLMGTAELPSGDFEFRREGTALGVDIGRA
TFTGVWHGQSVVMEACQPERFGKIYTRVAQRGKLTNLGMKTLSEEMTHYF
NTVELDLDGTAVRFEDMHHGYNRQGEASLRVTVGVVVHRIPNPENMKF*
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mRNA from alignment at H-paniculata_contig24951:1105..2032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24951.6785.1 ID=mRNA_H-paniculata_contig24951.6785.1|Name=mRNA_H-paniculata_contig24951.6785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at H-paniculata_contig24951:1105..2032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCCGTGGGCCGCGCAGTACTCGACCTCGACGCGCAGGATTTTGGCAA
TTTTTTGGTTCATCCCTTGATGGGTACGGCGGAGCTCCCCAGCGGAGACT
TTGAGTTCCGTCGTGAAGGAACAGCGCTTGGCGTCGATATTGGACGTGCA
ACGTTTACTGGTGTGTGGCACGGGCAATCGGTGGTGATGGAGGCGTGCCA
GCCAGAAAGGTGAGTTTGTCATTTGTGTATGCGCTAGTCTTCTTCCCTTG
TTTCTTTCGTTTGCCGATGCACCTCTAGGGTTTTGTCCTTGTTTTGGCAT
GCTGTAGAAAGAGAATGTCCTACTAGTAGTTTGCGATGGCAACCTACGCT
GTGTCATAGAATGATGACGAACCTTCCCTAGCACGCAGCTGCAATCGATC
CGCGGCTGCGGAAGTAATGTCTCATTTTCACCACAAACTATTGTGGTGTG
GCTTTAGCTTGTACAGGCCCACTGATTTGTATTTATTACACGTCTCTTGA
TTTTTGCGCACTCCTTTATTATGTCATTCTCTCGAATGAGATGTCCCTTC
GCGAGCAACGTTTGATAATATGGAGTCATCGCGGCCGTCTTCAACGTTTA
ATACTCCAGGCCCTCCCCGCTGTGATTTTTCATCTCGACTGGCTTGTAAA
TGCGACTCCCACTTCCTATGGCGCACCGTCCGGTTCACAGGTTTGGCAAA
ATCTATACGCGGGTCGCACAGCGCGGTAAACTCACCAACTTGGGGATGAA
AACGCTGTCCGAGGAGATGACCCACTATTTCAACACGGTAGAGCTCGACT
TGGACGGGACGGCGGTGCGATTCGAAGACATGCATCATGGTTACAACCGA
CAAGGGGAGGCGTCATTGCGAGTAACGGTGGGCGTTGTGGTCCACAGAAT
TCCCAACCCGGAAAACATGAAATTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24951:1105..2032+

>mRNA_H-paniculata_contig24951.6785.1 ID=mRNA_H-paniculata_contig24951.6785.1|Name=mRNA_H-paniculata_contig24951.6785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig24951:1105..2032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCCGTGGGCCGCGCAGTACTCGACCTCGACGCGCAGGATTTTGGCAA
TTTTTTGGTTCATCCCTTGATGGGTACGGCGGAGCTCCCCAGCGGAGACT
TTGAGTTCCGTCGTGAAGGAACAGCGCTTGGCGTCGATATTGGACGTGCA
ACGTTTACTGGTGTGTGGCACGGGCAATCGGTGGTGATGGAGGCGTGCCA
GCCAGAAAGCCCGCCGTGGGCCGCGCAGTACTCGACCTCGACGCGCAGGA
TTTTGGCAATTTTTTGGTTCATCCCTTGATGGGTACGGCGGAGCTCCCCA
GCGGAGACTTTGAGTTCCGTCGTGAAGGAACAGCGCTTGGCGTCGATATT
GGACGTGCAACGTTTACTGGTGTGTGGCACGGGCAATCGGTGGTGATGGA
GGCGTGCCAGCCAGAAAGGTTTGGCAAAATCTATACGCGGGTCGCACAGC
GCGGTAAACTCACCAACTTGGGGATGAAAACGCTGTCCGAGGAGATGACC
CACTATTTCAACACGGTAGAGCTCGACTTGGACGGGACGGCGGTGCGATT
CGAAGACATGCATCATGGTTACAACCGACAAGGGGAGGCGTCATTGCGAG
TAACGGTGGGCGTTGTGGTCCACAGAATTCCCAACCCGGAAAACATGAAA
TTCTGAGTTTGGCAAAATCTATACGCGGGTCGCACAGCGCGGTAAACTCA
CCAACTTGGGGATGAAAACGCTGTCCGAGGAGATGACCCACTATTTCAAC
ACGGTAGAGCTCGACTTGGACGGGACGGCGGTGCGATTCGAAGACATGCA
TCATGGTTACAACCGACAAGGGGAGGCGTCATTGCGAGTAACGGTGGGCG
TTGTGGTCCACAGAATTCCCAACCCGGAAAACATGAAATTCTGA
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