prot_H-paniculata_contig2478.6727.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2478.6727.1
Unique Nameprot_H-paniculata_contig2478.6727.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length207
Homology
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 9.330e-66
Identity = 106/166 (63.86%), Postives = 135/166 (81.33%), Query Frame = 0
Query:   38 LKGAAGDTYLKCGKCQACYAIDVEILGPKGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASSVRG 203
            L+G+AGDTY+KCGKCQACY +++++LG +GR   CSVCG+ WFQTAER+LTLT+NFLM+DWTE+R       A++     +  GFNLFVGNIPFSVSEKDLGAIFGNFG+V   +L+TD+NGDS+GYG + + TE +G+KAI ALNG+EIQGR MLV+VGAS+  G
Sbjct:  137 LQGSAGDTYVKCGKCQACYPMELDVLG-RGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDR------VAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSAG 295          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A1Z5KHB9_FISSO (RRM domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHB9_FISSO)

HSP 1 Score: 114 bits (286), Expect = 2.100e-28
Identity = 63/156 (40.38%), Postives = 93/156 (59.62%), Query Frame = 0
Query:   44 DTYLKCGKCQACYAIDVEILGPK-GRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTE---ERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVR 195
            DTY++CGKCQ+ + +     G + GR   CSVC H+WFQ+ ++ L L + F M    E   ER ++ + K  SP        F L++GNI F   E DL  +FG  G+V + SL+ DD G ++G+GFI + T+ +G+KAI  LNG  ++GR + VR
Sbjct:   41 DTYVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQNNMQKGLSPK---FMGDFKLYIGNIAFECHEDDLYEVFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEDGEKAIEELNGAPVRGRNIAVR 193          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 116 bits (291), Expect = 3.380e-28
Identity = 55/161 (34.16%), Postives = 99/161 (61.49%), Query Frame = 0
Query:   46 YLKCGKCQACYAIDVEILGPKGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSKASS---PPEKPHEEG-FNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASSVR 202
            +++CG+C A YA+  +++ P+G    C VCGHTWFQ + R   L+  ++++D+ E+ ++       +   P +    +G  ++FVGN+PFS++E D+  +F   G V+  +++ D    SKG+GF+ +  + EG++AI AL+G E+ GR + VR+G S  +
Sbjct:  107 FVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQ 267          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A1Z5K5B1_FISSO (RNA binding protein fox-1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5B1_FISSO)

HSP 1 Score: 113 bits (283), Expect = 7.820e-28
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 0
Query:   44 DTYLKCGKCQACYAIDVEILGPK-GRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTE---ERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVR 195
            DTY++CGKCQ+ + +     G + GR   CSVC H+WFQ+ ++ L L + F M    E   ER +  + K  SP        F L+VGNI F   E DL  IFG  G+V + SL+ DD G ++G+GFI + T+  G+KAI  LNG  ++GR + VR
Sbjct:   52 DTYVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQSNMQKGLSPK---FMGDFKLYVGNIAFECHEDDLYEIFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIEELNGTPVRGRNIAVR 204          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A8J2SPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPH7_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.470e-25
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 0
Query:   41 AAGDT------YLKCGKCQACYAIDVEILGP-KGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSK--------ASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASS 200
            A GDT       + CG C+A YAID +ILG   G    C VCG+ WFQ   R  TL   F ++++  E+ ++A+ K        A  PP K       LFV N+PF  S+ D+ A+F     +  A ++ DD+G S+GYGF+ I    + ++ I+  +G ++ GR ++VR G  S
Sbjct:   90 ADGDTDEDVQHIITCGSCKAVYAIDKDILGKGAGAKVQCEVCGNVWFQATARVNTLFDGFELKEYDAEKAQEAIDKQKARAKEAADRPPRK--RGAATLFVANLPFRYSDDDVVALFAEVAPITSAQVVMDDDGRSRGYGFVEIEVAADAERLISEFHGSDVGGRDLIVRPGKQS 262          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 104 bits (259), Expect = 2.550e-24
Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = 0
Query:   42 AGDTYLKCGKCQACYAIDVEILGPKGRTTVC--SVCGHTWFQTAERSLTLTQNFLMRDWTEERR-KDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASSVRGGGG 206
            A   ++ C +C+A + +D E     GR   C  + C H WFQTA+R  TL     + ++ +E + + A  K++ P  +     FN+FVGN+ +SV+E DL  +F   G V K  ++TDD+G  +G+GF+N+  E  G +A+  L+G E+QGR + V  G  + RG GG
Sbjct:   32 APSKFVTCARCKATFEVD-EADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAAGKSAEPVGR-----FNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQNDRGRGG 193          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: R1FCJ1_EMIHU (RRM domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCJ1_EMIHU)

HSP 1 Score: 102 bits (254), Expect = 2.500e-23
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   47 LKCGKCQACYAIDVEILGP-KGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVG 197
            + C  C+A Y+++ + LGP  G+   CS C H WFQ+  R   L ++  + ++ +E  KD ++ A  P E      F  +VGN+PF V E++L  +FG +G V+  +++TD++G S+G+ F+N+    EG  A+ ALNG  +QGR + V  G
Sbjct:   49 ITCSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEM-KDRMA-AGKPAEA--RAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEG 196          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A8J5X7H2_DIALT (RRM domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7H2_DIALT)

HSP 1 Score: 102 bits (254), Expect = 5.130e-23
Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 0
Query:   46 YLKCGKCQACYAIDVEILGPKGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSKASSPPEKPHEEG---FNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLV 194
            +  C +C A Y +D+ +   KG    C+VC +TWFQ  ER +     F +  + EERR +  +   SP       G    N++VGN+PF++S+ DL  +F  FG V K  L+ D+ G SKG+GF+ + +E EGQKAI  LN     GR + V
Sbjct:   73 FAVCSRCGAIYDVDMALFRGKGAKVRCTVCSNTWFQLTERLVEKPDAFDIVSFPEERRVERPAVLDSP------RGGGIINIYVGNMPFALSDVDLANLFAPFGTVTKIMLVRDEIGRSKGFGFVEMASEEEGQKAILELNDRAFGGRPITV 218          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.480e-23
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 0
Query:   45 TYLKCGKCQACYAIDVEILGP-KGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTE---ERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVR 195
            TY +CG+C   +A+  + LG  +GR   CSVCGHTW+Q+ +R   +   F + D  E   +R  + + +  SP          L+VGNI F+ +E+D+   F   G V + SL+ DD G ++G+GFI + T+  G+KAI  L+G  + GR + VR
Sbjct:   70 TYARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPK---FVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221          
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Match: A0A6U4MCT9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MCT9_HEMAN)

HSP 1 Score: 100 bits (248), Expect = 3.940e-22
Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 0
Query:   34 DTSDLKGAAG--DTYLKCGKCQACYAIDVEILGPKGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTEERRKDALSKASSPPEKPHEEG-FNLFVGNIPFSVSEKDLGAIFGNFGKVLKASLITDD-NGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASSVRGGGGG 207
            D  D+ G+ G  + Y  CG C+A Y +D+E LG  GR   C+VC HTWFQ+A R  T+  +  ++ +  E  K+      +   +   +G   LFVGN+PFS++E  L  +F  +G+V   S+I D   G  KGYGF++   +  G+ A+  ++GM + GR + V++      G  GG
Sbjct:   86 DLGDVGGSTGVEEKYATCGTCKASYILDLEELGA-GRKVKCAVCDHTWFQSAARLQTVRSSDKVQPFPVEEFKERQKALGNVVTRHDRKGAVTLFVGNMPFSITEDKLKGVFEEYGEVASISIICDPATGRPKGYGFVDYVEKDCGEVAMNQIDGMLVDGRELAVKISEDKFGGSRGG 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2478.6727.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE9.330e-6663.86RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A1Z5KHB9_FISSO2.100e-2840.38RRM domain-containing protein n=1 Tax=Fistulifera ... [more]
I2CR05_NANGC3.380e-2834.16RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A1Z5K5B1_FISSO7.820e-2841.67RNA binding protein fox-1 n=1 Tax=Fistulifera sola... [more]
A0A8J2SPH7_9STRA2.470e-2535.43Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3TR26_EMIHU2.550e-2436.31Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1FCJ1_EMIHU2.500e-2336.18RRM domain-containing protein n=2 Tax=Emiliania hu... [more]
A0A8J5X7H2_DIALT5.130e-2338.16RRM domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7R9WVI4_9STRA6.480e-2336.77Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6U4MCT9_HEMAN3.940e-2234.83Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 123..195
e-value: 6.2E-21
score: 85.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 124..192
e-value: 2.1E-18
score: 65.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 122..199
score: 18.53
IPR011723Zinc finger/thioredoxin putativeTIGRFAMTIGR02098TIGR02098coord: 46..80
e-value: 5.8E-7
score: 27.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 89..201
e-value: 1.1E-24
score: 89.2
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 112..197
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 112..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2478contigH-paniculata_contig2478:12681..19885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2478.6727.1mRNA_H-paniculata_contig2478.6727.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2478 12679..19885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2478.6727.1 ID=prot_H-paniculata_contig2478.6727.1|Name=mRNA_H-paniculata_contig2478.6727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
AISAPARRKLLSADGSSALSMRSMDFTDMGGGVDTSDLKGAAGDTYLKCG
KCQACYAIDVEILGPKGRTTVCSVCGHTWFQTAERSLTLTQNFLMRDWTE
ERRKDALSKASSPPEKPHEEGFNLFVGNIPFSVSEKDLGAIFGNFGKVLK
ASLITDDNGDSKGYGFININTEVEGQKAITALNGMEIQGRRMLVRVGASS
VRGGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR011723Znf/thioredoxin_put
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf